Wall clock time and date at job start Tue Mar 31 2020 13:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37972 * 119.88090 * 2 1 4 4 C 1.38243 * 120.35656 * 180.02562 * 3 2 1 5 5 C 1.38394 * 119.76130 * 0.21212 * 4 3 2 6 6 C 1.37693 * 119.97825 * 359.97438 * 5 4 3 7 7 C 1.38923 * 120.79131 * 359.62032 * 6 5 4 8 8 O 1.36132 * 111.22577 * 180.64250 * 7 6 5 9 9 C 1.43772 * 109.24065 * 340.96087 * 8 7 6 10 10 H 1.08996 * 110.74803 * 269.24492 * 9 8 7 11 11 C 1.50697 * 110.74608 * 146.08126 * 9 8 7 12 12 O 1.21279 * 120.00356 * 356.45704 * 11 9 8 13 13 N 1.34775 * 120.00090 * 176.45386 * 11 9 8 14 14 C 1.39243 * 120.00128 * 175.70745 * 13 11 9 15 15 C 1.39483 * 119.83216 * 215.53397 * 14 13 11 16 16 C 1.36371 * 120.16534 * 180.20998 * 15 14 13 17 17 C 1.40868 * 119.83219 * 359.52200 * 16 15 14 18 18 C 1.41148 * 120.16748 * 180.27297 * 17 16 15 19 19 H 1.07995 * 120.00214 * 145.21885 * 18 17 16 20 20 C 1.39909 * 119.99954 * 325.22097 * 18 17 16 21 21 N 1.30871 * 120.00057 * 4.43552 * 20 18 17 22 22 Si 1.86795 * 119.99846 * 184.43669 * 20 18 17 23 23 H 1.48492 * 109.47377 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47335 * 120.00416 * 22 20 18 25 25 H 1.48506 * 109.47151 * 239.99673 * 22 20 18 26 26 C 1.40877 * 119.66841 * 0.25650 * 17 16 15 27 27 C 1.36367 * 119.82869 * 359.97438 * 26 17 16 28 28 C 1.51642 * 132.17115 * 179.03875 * 6 5 4 29 29 H 1.09001 * 109.46929 * 269.97670 * 1 2 3 30 30 H 1.09002 * 109.47433 * 29.97693 * 1 2 3 31 31 H 1.09005 * 109.47203 * 149.97589 * 1 2 3 32 32 H 1.08004 * 119.82396 * 0.02562 * 3 2 1 33 33 H 1.07995 * 120.12106 * 180.22222 * 4 3 2 34 34 H 1.07998 * 120.00850 * 179.97438 * 5 4 3 35 35 H 0.97000 * 119.99851 * 355.71071 * 13 11 9 36 36 H 1.08002 * 119.91806 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.08491 * 179.79924 * 16 15 14 38 38 H 0.96999 * 120.00117 * 180.02562 * 21 20 18 39 39 H 1.07998 * 120.08299 * 180.02562 * 26 17 16 40 40 H 1.07999 * 119.91631 * 180.02562 * 27 26 17 41 41 H 1.08995 * 110.94069 * 77.73378 * 28 6 5 42 42 H 1.09002 * 110.93831 * 314.04977 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1963 0.0000 4 6 3.5767 1.2078 -0.0005 5 6 4.2736 0.0121 -0.0055 6 6 3.5897 -1.1829 -0.0094 7 6 2.2007 -1.2073 -0.0005 8 8 1.7303 -2.4848 0.0079 9 6 2.7678 -3.3747 -0.4377 10 1 2.7201 -3.5133 -1.5178 11 6 2.6759 -4.7003 0.2731 12 8 1.8450 -4.8669 1.1407 13 7 3.5171 -5.7007 -0.0552 14 6 3.4925 -6.8945 0.6613 15 6 4.6797 -7.5887 0.8940 16 6 4.6629 -8.7606 1.5911 17 6 3.4439 -9.2645 2.0854 18 6 3.4191 -10.4738 2.8128 19 1 2.7203 -10.6004 3.6265 20 6 4.2999 -11.5086 2.4799 21 7 5.2047 -11.3248 1.5524 22 14 4.1844 -13.1526 3.3593 23 1 3.0865 -13.1038 4.3579 24 1 3.9070 -14.2248 2.3700 25 1 5.4684 -13.4362 4.0494 26 6 2.2496 -8.5552 1.8503 27 6 2.2816 -7.3871 1.1474 28 6 4.0592 -2.6246 -0.0340 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6495 2.1289 0.0004 33 1 4.1109 2.1464 0.0031 34 1 5.3536 0.0164 -0.0064 35 1 4.1398 -5.5892 -0.7906 36 1 5.6143 -7.1986 0.5185 37 1 5.5826 -9.2987 1.7677 38 1 5.8151 -12.0424 1.3213 39 1 1.3113 -8.9352 2.2265 40 1 1.3669 -6.8420 0.9667 41 1 4.4007 -2.9399 0.9519 42 1 4.8415 -2.7668 -0.7795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524861680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:13 Heat of formation + Delta-G solvation = -35.079641 kcal Electronic energy + Delta-G solvation = -25576.347494 eV Core-core repulsion = 21871.614902 eV Total energy + Delta-G solvation = -3704.732592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51606 -41.00681 -39.17688 -38.32357 -36.23878 -34.93753 -34.45117 -32.21103 -31.53582 -31.29257 -30.20984 -27.71995 -27.05611 -25.30594 -23.46112 -23.09740 -22.57466 -21.82590 -21.33665 -19.33241 -18.79096 -18.69362 -17.89158 -17.56678 -17.00714 -16.75226 -16.11245 -16.03247 -15.66191 -15.12017 -14.91587 -14.74628 -14.50905 -14.45921 -14.16641 -14.05478 -13.89940 -13.66302 -13.61804 -13.30116 -13.18685 -12.92538 -12.79280 -12.70637 -12.41877 -12.36439 -12.14491 -11.88756 -11.74665 -11.64836 -11.12513 -10.90025 -10.55244 -9.65309 -9.50487 -9.10727 -8.80467 -8.53454 -6.35353 0.30475 0.38093 0.70774 1.10461 1.37239 1.39591 1.53709 1.60450 1.65611 2.23575 2.51508 2.74991 2.77610 3.25697 3.41319 3.64622 3.74981 3.83466 3.93377 4.07060 4.29556 4.37604 4.40665 4.47378 4.50266 4.62331 4.69658 4.74522 4.78596 4.89734 4.96727 5.08014 5.11362 5.26161 5.28960 5.38451 5.41132 5.46530 5.55195 5.64865 5.67026 5.85881 5.97654 6.10178 6.18406 6.35589 6.58261 6.65344 6.94098 6.95935 7.23476 8.40058 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.035514 B = 0.002257 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.232118 B =12405.190131 C =12895.510114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.140 4.140 5 C -0.078 4.078 6 C -0.180 4.180 7 C 0.068 3.932 8 O -0.306 6.306 9 C 0.072 3.928 10 H 0.145 0.855 11 C 0.503 3.497 12 O -0.561 6.561 13 N -0.630 5.630 14 C 0.017 3.983 15 C -0.110 4.110 16 C -0.160 4.160 17 C 0.070 3.930 18 C -0.498 4.498 19 H 0.069 0.931 20 C 0.030 3.970 21 N -0.836 5.836 22 Si 0.988 3.012 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.262 1.262 26 C -0.224 4.224 27 C -0.097 4.097 28 C -0.090 4.090 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.422 0.578 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 22.200 -8.516 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.158 4.158 5 C -0.095 4.095 6 C -0.181 4.181 7 C 0.024 3.976 8 O -0.220 6.220 9 C 0.012 3.988 10 H 0.162 0.838 11 C 0.290 3.710 12 O -0.439 6.439 13 N -0.276 5.276 14 C -0.076 4.076 15 C -0.130 4.130 16 C -0.180 4.180 17 C 0.067 3.933 18 C -0.528 4.528 19 H 0.087 0.913 20 C -0.182 4.182 21 N -0.464 5.464 22 Si 0.809 3.191 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.187 1.187 26 C -0.244 4.244 27 C -0.117 4.117 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.261 0.739 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.605 21.909 -7.974 23.370 hybrid contribution -0.064 -1.239 0.212 1.259 sum 1.541 20.670 -7.762 22.133 Atomic orbital electron populations 1.20704 0.90191 1.03219 1.02460 1.19512 0.97224 0.89749 1.05603 1.21165 0.94892 0.96610 0.97981 1.21458 0.94029 0.98752 1.01584 1.20664 1.01238 0.89906 0.97740 1.20920 0.93073 0.96168 1.07952 1.19835 0.93186 0.85091 0.99536 1.86889 1.38049 1.14351 1.82733 1.23255 0.87842 0.87274 1.00390 0.83801 1.20729 0.81449 0.85608 0.83177 1.90718 1.36940 1.82582 1.33680 1.42637 1.38890 1.11680 1.34413 1.17256 0.93605 0.89779 1.06937 1.20585 0.95786 0.96152 1.00518 1.21206 0.98500 0.95548 1.02714 1.18056 0.91346 0.92331 0.91524 1.19733 1.17947 0.99031 1.16107 0.91281 1.26705 0.92659 1.04148 0.94736 1.69806 1.15182 1.35012 1.26399 0.85064 0.79258 0.76172 0.78599 1.18777 1.19104 1.18700 1.20938 0.97293 0.98907 1.07258 1.20510 0.96598 0.95153 0.99482 1.21749 0.96515 0.89625 1.04787 0.91584 0.88907 0.92994 0.82410 0.82237 0.83144 0.73933 0.85048 0.86027 0.90305 0.88828 0.87927 0.89921 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.98 71.23 0.71 -1.38 16 2 C -0.12 -2.61 5.90 -19.69 -0.12 -2.72 16 3 C -0.09 -1.37 9.66 22.21 0.21 -1.15 16 4 C -0.14 -1.88 10.07 22.31 0.22 -1.66 16 5 C -0.08 -1.23 10.03 22.18 0.22 -1.00 16 6 C -0.18 -3.85 6.27 -19.53 -0.12 -3.97 16 7 C 0.07 1.79 6.73 22.68 0.15 1.94 16 8 O -0.31 -9.70 10.27 -76.85 -0.79 -10.49 16 9 C 0.07 1.81 4.05 30.43 0.12 1.93 16 10 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 11 C 0.50 17.35 6.96 87.66 0.61 17.96 16 12 O -0.56 -25.81 13.99 15.18 0.21 -25.60 16 13 N -0.63 -20.22 5.30 -303.11 -1.61 -21.82 16 14 C 0.02 0.75 6.31 38.56 0.24 0.99 16 15 C -0.11 -4.81 9.90 22.13 0.22 -4.59 16 16 C -0.16 -8.24 8.61 22.48 0.19 -8.04 16 17 C 0.07 3.88 5.55 -21.28 -0.12 3.76 16 18 C -0.50 -27.57 9.02 23.39 0.21 -27.36 16 19 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 20 C 0.03 1.52 5.42 85.24 0.46 1.99 16 21 N -0.84 -43.19 10.59 21.82 0.23 -42.96 16 22 Si 0.99 39.01 29.56 68.60 2.03 41.04 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 C -0.22 -11.93 9.74 22.48 0.22 -11.71 16 27 C -0.10 -4.81 8.61 22.13 0.19 -4.62 16 28 C -0.09 -1.76 6.64 30.73 0.20 -1.56 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.05 1.15 8.01 -2.38 -0.02 1.13 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.42 9.33 8.82 -92.71 -0.82 8.51 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.12 6.49 6.13 -2.91 -0.02 6.48 16 38 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 39 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.10 5.13 6.22 -2.91 -0.02 5.11 16 41 H 0.08 1.89 7.92 -2.39 -0.02 1.87 16 42 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -73.98 356.53 4.16 -69.81 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.24 Total: 31.21 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 3.84 Total: -41.20 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -1.38 Total: -64.78 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.58 Total: -36.08 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -73.98 4.16 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524861680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.735 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds