Wall clock time and date at job start Tue Mar 31 2020 14:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38049 * 126.29553 * 2 1 4 4 C 1.47430 * 126.40830 * 359.97027 * 3 2 1 5 5 O 1.21604 * 120.00670 * 0.31538 * 4 3 2 6 6 N 1.34780 * 119.99354 * 180.32165 * 4 3 2 7 7 C 1.46505 * 119.99729 * 175.09579 * 6 4 3 8 8 C 1.52998 * 112.99952 * 303.49092 * 7 6 4 9 9 C 1.50696 * 109.46864 * 303.22720 * 8 7 6 10 10 O 1.20818 * 120.00225 * 354.12912 * 9 8 7 11 11 O 1.34238 * 119.99726 * 174.12328 * 9 8 7 12 12 C 1.54026 * 113.81674 * 171.66070 * 7 6 4 13 13 O 1.44566 * 85.38730 * 268.29189 * 12 7 6 14 14 C 1.44170 * 93.32792 * 335.80385 * 13 12 7 15 15 C 1.41286 * 107.17296 * 180.25817 * 3 2 1 16 16 N 1.30451 * 108.02417 * 359.74701 * 15 3 2 17 17 N 1.34263 * 126.28953 * 179.81811 * 2 1 3 18 18 C 1.46495 * 125.75535 * 359.97438 * 17 2 1 19 19 C 1.50697 * 109.47142 * 269.71708 * 18 17 2 20 20 H 1.07997 * 120.00232 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99780 * 179.72294 * 19 18 17 22 22 N 1.31516 * 119.99829 * 0.27647 * 21 19 18 23 23 Si 1.86796 * 119.99763 * 180.27738 * 21 19 18 24 24 H 1.48505 * 109.47106 * 60.00367 * 23 21 19 25 25 H 1.48498 * 109.47112 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47298 * 300.00293 * 23 21 19 27 27 H 1.09003 * 109.46863 * 270.18296 * 1 2 3 28 28 H 1.09001 * 109.47009 * 30.18484 * 1 2 3 29 29 H 1.09001 * 109.46884 * 150.18179 * 1 2 3 30 30 H 0.97001 * 120.00369 * 355.09210 * 6 4 3 31 31 H 1.08997 * 109.47278 * 63.23220 * 8 7 6 32 32 H 1.09005 * 109.46775 * 183.22944 * 8 7 6 33 33 H 0.96704 * 116.99558 * 180.02562 * 11 9 8 34 34 H 1.09003 * 113.86665 * 22.50086 * 12 7 6 35 35 H 1.09007 * 113.86664 * 154.20644 * 12 7 6 36 36 H 1.08996 * 113.86515 * 270.04400 * 14 13 12 37 37 H 1.08998 * 113.86689 * 138.33664 * 14 13 12 38 38 H 1.08007 * 125.98742 * 179.76390 * 15 3 2 39 39 H 1.09002 * 109.47154 * 149.71887 * 18 17 2 40 40 H 1.08994 * 109.47023 * 29.71969 * 18 17 2 41 41 H 0.97004 * 119.99254 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8858 2.5203 -0.0006 5 8 0.6996 2.7878 0.0046 6 7 2.8000 3.5106 -0.0071 7 6 2.3674 4.9061 -0.1162 8 6 1.5178 5.1730 -1.3602 9 6 2.2883 4.7694 -2.5908 10 8 3.4393 4.4150 -2.4937 11 8 1.6958 4.8034 -3.7948 12 6 3.5015 5.9270 0.0934 13 8 3.1064 5.9052 1.4838 14 6 1.7642 5.4736 1.1826 15 6 3.6591 0.6498 -0.0061 16 7 3.6341 -0.6545 -0.0040 17 7 2.3016 -1.0822 0.0034 18 6 1.8500 -2.4758 0.0084 19 6 1.7024 -2.9509 1.4309 20 1 1.9225 -2.2817 2.2494 21 6 1.2803 -4.2382 1.6874 22 7 1.0117 -5.0531 0.6906 23 14 1.0898 -4.8247 3.4506 24 1 0.0934 -3.9744 4.1502 25 1 0.6274 -6.2359 3.4556 26 1 2.3976 -4.7304 4.1477 27 1 -0.3633 0.0033 1.0277 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8916 -0.5110 30 1 3.7444 3.2995 0.0605 31 1 0.5963 4.5937 -1.3021 32 1 1.2766 6.2347 -1.4145 33 1 2.2302 4.5350 -4.5548 34 1 4.4974 5.5239 -0.0904 35 1 3.3297 6.8843 -0.3989 36 1 1.0632 6.2927 1.0221 37 1 1.3832 4.7111 1.8619 38 1 4.5450 1.2676 -0.0113 39 1 2.5821 -3.0968 -0.5079 40 1 0.8889 -2.5480 -0.5005 41 1 0.7151 -5.9589 0.8711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574114336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:12 Heat of formation + Delta-G solvation = -91.608753 kcal Electronic energy + Delta-G solvation = -27778.828755 eV Core-core repulsion = 23660.795613 eV Total energy + Delta-G solvation = -4118.033142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.53470 -42.04169 -40.71454 -39.53634 -37.04920 -35.84447 -35.19386 -33.86176 -32.92320 -32.20677 -29.22603 -28.33217 -27.72533 -27.60167 -25.42123 -23.75669 -22.90116 -21.79778 -20.60833 -20.22796 -19.05372 -18.87830 -18.59229 -17.85592 -17.36031 -16.88327 -16.79392 -16.72631 -16.37073 -16.16845 -16.04736 -15.82782 -15.26938 -15.12503 -14.54910 -14.29911 -14.08877 -13.98784 -13.68884 -13.58527 -13.43593 -13.40237 -13.10376 -12.98120 -12.69952 -12.49787 -12.33788 -12.31275 -11.89864 -11.89137 -11.68574 -11.49754 -11.04447 -10.77108 -10.64267 -10.29113 -10.06889 -9.47171 -8.39110 -6.55708 0.65045 1.27113 1.29980 1.37531 1.38582 1.46829 1.61607 2.08093 2.20514 2.31946 2.44830 2.69230 2.93139 3.18995 3.55519 3.72411 3.74520 4.09051 4.12700 4.22161 4.35838 4.38692 4.45593 4.52315 4.57564 4.62008 4.71844 4.76335 4.79607 4.87692 5.00067 5.06303 5.12745 5.15777 5.47042 5.51388 5.63592 5.67491 5.73198 6.03236 6.52920 6.53639 6.81140 7.03693 7.15439 7.28078 8.68703 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.003122 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.914297 B = 8965.794552 C = 9455.313851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.148 3.852 3 C -0.333 4.333 4 C 0.610 3.390 5 O -0.566 6.566 6 N -0.693 5.693 7 C 0.120 3.880 8 C -0.127 4.127 9 C 0.481 3.519 10 O -0.533 6.533 11 O -0.519 6.519 12 C 0.050 3.950 13 O -0.398 6.398 14 C 0.041 3.959 15 C 0.077 3.923 16 N -0.337 5.337 17 N -0.338 5.338 18 C 0.267 3.733 19 C -0.557 4.557 20 H 0.051 0.949 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.274 1.274 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.411 0.589 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.425 0.575 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.217 0.783 39 H 0.030 0.970 40 H 0.052 0.948 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 24.322 -5.599 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 C -0.348 4.348 4 C 0.400 3.600 5 O -0.447 6.447 6 N -0.345 5.345 7 C 0.032 3.968 8 C -0.165 4.165 9 C 0.325 3.675 10 O -0.423 6.423 11 O -0.333 6.333 12 C -0.026 4.026 13 O -0.318 6.318 14 C -0.036 4.036 15 C -0.110 4.110 16 N -0.157 5.157 17 N -0.115 5.115 18 C 0.149 3.851 19 C -0.595 4.595 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.199 1.199 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.134 0.866 32 H 0.174 0.826 33 H 0.286 0.714 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.098 0.902 38 H 0.233 0.767 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.415 23.143 -5.079 23.697 hybrid contribution 0.374 -0.740 0.047 0.830 sum 0.789 22.403 -5.032 22.975 Atomic orbital electron populations 1.20564 0.85485 1.04157 1.04041 1.22007 0.96051 0.86540 0.94247 1.19959 0.93061 0.93318 1.28454 1.17032 0.85126 0.83494 0.74341 1.90644 1.17053 1.84418 1.52606 1.45237 1.10256 1.03929 1.75033 1.23120 0.96245 0.82971 0.94439 1.21909 1.00282 1.07115 0.87219 1.23536 0.85541 0.73252 0.85198 1.90696 1.19745 1.44721 1.87131 1.84505 1.49750 1.80727 1.18278 1.24557 0.98796 0.98129 0.81116 1.89788 1.25957 1.90469 1.25538 1.24487 0.86412 0.98876 0.93853 1.24413 0.97786 0.91672 0.97153 1.77106 0.98480 1.14300 1.25770 1.49125 1.03318 1.07852 1.51163 1.19369 0.95269 0.72291 0.98183 1.21359 1.48016 0.98662 0.91508 0.93024 1.25726 0.93742 0.95858 1.02337 1.69991 1.44598 1.07635 1.33203 0.85405 0.78814 0.77737 0.78568 1.19031 1.19681 1.19945 0.89776 0.87585 0.91168 0.75175 0.86623 0.82611 0.71401 0.87940 0.85756 0.85793 0.90164 0.76668 0.95220 0.93012 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.56 71.24 0.68 -2.33 16 2 C 0.15 6.04 7.01 42.14 0.30 6.34 16 3 C -0.33 -11.97 6.13 -20.15 -0.12 -12.09 16 4 C 0.61 18.57 7.49 86.66 0.65 19.21 16 5 O -0.57 -18.36 13.02 -4.04 -0.05 -18.41 16 6 N -0.69 -16.07 4.23 -456.68 -1.93 -18.01 16 7 C 0.12 2.10 0.32 4.30 0.00 2.10 16 8 C -0.13 -1.88 4.96 29.85 0.15 -1.74 16 9 C 0.48 8.69 8.10 71.23 0.58 9.26 16 10 O -0.53 -12.01 15.69 21.99 0.34 -11.67 16 11 O -0.52 -7.64 13.42 -51.49 -0.69 -8.33 16 12 C 0.05 0.70 7.95 72.29 0.57 1.28 16 13 O -0.40 -7.86 12.47 -148.98 -1.86 -9.72 16 14 C 0.04 0.71 8.35 72.30 0.60 1.31 16 15 C 0.08 2.69 11.51 85.65 0.99 3.68 16 16 N -0.34 -14.95 12.50 -56.27 -0.70 -15.66 16 17 N -0.34 -15.78 3.56 -336.71 -1.20 -16.98 16 18 C 0.27 13.93 5.97 85.63 0.51 14.44 16 19 C -0.56 -30.92 9.39 25.60 0.24 -30.68 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 21 C 0.02 1.35 5.46 84.66 0.46 1.81 16 22 N -0.92 -51.41 13.29 21.45 0.28 -51.12 16 23 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.11 3.46 6.52 -2.39 -0.02 3.44 16 29 H 0.07 2.50 7.05 -2.39 -0.02 2.48 16 30 H 0.41 8.71 7.60 -92.71 -0.70 8.00 16 31 H 0.12 2.18 6.50 -2.39 -0.02 2.17 16 32 H 0.16 1.00 8.12 -2.38 -0.02 0.98 16 33 H 0.42 3.18 9.10 -74.05 -0.67 2.51 16 34 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.12 0.95 8.08 -2.38 -0.02 0.93 16 36 H 0.12 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.22 5.41 7.51 -2.91 -0.02 5.39 16 39 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 2.68 7.01 -2.39 -0.02 2.67 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -72.56 355.44 1.55 -71.00 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.27 Total: 21.51 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.61 Total: 12.60 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.55 Total: -101.77 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -2.26 Total: -48.13 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.56 1.55 -71.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574114336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.606 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds