Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48506 * 109.46804 * 270.00089 * 3 2 1 5 5 H 1.48500 * 109.47155 * 29.99602 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00084 * 3 2 1 7 7 C 1.37875 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49784 * 59.93247 * 9 7 2 11 11 C 1.53039 * 109.49846 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.53657 * 181.31299 * 11 9 7 13 13 C 1.53197 * 109.31348 * 298.63593 * 12 11 9 14 14 N 1.46923 * 108.89200 * 54.56697 * 13 12 11 15 15 C 1.34776 * 120.62907 * 126.46290 * 14 13 12 16 16 O 1.21592 * 119.99651 * 174.96113 * 15 14 13 17 17 N 1.34775 * 120.00225 * 354.95834 * 15 14 13 18 18 C 1.46502 * 120.00038 * 185.07564 * 17 15 14 19 19 C 1.50700 * 109.47031 * 180.02562 * 18 17 15 20 20 C 1.35301 * 126.65789 * 90.00472 * 19 18 17 21 21 C 1.42305 * 103.92008 * 179.97438 * 20 19 18 22 22 C 1.48240 * 126.94560 * 180.02562 * 21 20 19 23 23 O 1.21400 * 120.00164 * 359.97438 * 22 21 20 24 24 O 1.34655 * 119.99879 * 180.02562 * 22 21 20 25 25 N 1.31023 * 106.11016 * 359.97438 * 21 20 19 26 26 O 1.20900 * 111.43431 * 359.73933 * 25 21 20 27 27 C 1.46957 * 118.71242 * 306.63799 * 14 13 12 28 28 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.45713 * 61.29658 * 11 9 7 30 30 H 1.08995 * 109.45070 * 301.32992 * 11 9 7 31 31 H 1.09002 * 109.49601 * 178.68753 * 12 11 9 32 32 H 1.08996 * 109.50008 * 58.58655 * 12 11 9 33 33 H 1.09002 * 109.58190 * 174.42190 * 13 12 11 34 34 H 1.08998 * 109.58588 * 294.70094 * 13 12 11 35 35 H 0.96994 * 119.99906 * 5.07487 * 17 15 14 36 36 H 1.09001 * 109.47149 * 300.00641 * 18 17 15 37 37 H 1.09000 * 109.46922 * 60.00046 * 18 17 15 38 38 H 1.07999 * 128.04842 * 359.92028 * 20 19 18 39 39 H 0.96696 * 116.99782 * 180.02562 * 24 22 21 40 40 H 1.09005 * 109.46953 * 293.57143 * 27 14 13 41 41 H 1.09001 * 109.71186 * 173.29023 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6237 -2.5570 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0325 13 6 0.6058 -5.1002 1.2198 14 7 -0.2528 -3.9112 1.3077 15 6 -1.5889 -4.0367 1.4324 16 8 -2.2796 -3.0495 1.5962 17 7 -2.1594 -5.2564 1.3754 18 6 -3.6187 -5.3843 1.3991 19 6 -3.9964 -6.8414 1.3252 20 6 -4.1760 -7.6832 2.3691 21 6 -4.5172 -8.9211 1.7557 22 6 -4.8230 -10.2001 2.4400 23 8 -4.7955 -10.2618 3.6521 24 8 -5.1302 -11.2938 1.7170 25 7 -4.5075 -8.7018 0.4640 26 8 -4.2260 -7.5531 0.2131 27 6 0.3732 -2.5827 1.2532 28 1 -0.4850 0.8400 -0.0004 29 1 2.8563 -3.6183 0.9021 30 1 2.8871 -3.5917 -0.8774 31 1 2.1898 -5.8163 -0.0560 32 1 0.8508 -5.0231 -0.9211 33 1 -0.0140 -5.9944 1.1537 34 1 1.2397 -5.1595 2.1045 35 1 -1.6039 -6.0495 1.3187 36 1 -4.0061 -4.9552 2.3232 37 1 -4.0437 -4.8547 0.5465 38 1 -4.0816 -7.4665 3.4229 39 1 -5.3225 -12.1046 2.2076 40 1 0.9881 -2.4341 2.1409 41 1 -0.3985 -1.8141 1.2105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = -46.551670 kcal Electronic energy + Delta-G solvation = -26904.687196 eV Core-core repulsion = 22788.607876 eV Total energy + Delta-G solvation = -4116.079320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.65104 -40.57983 -39.83221 -37.07275 -36.73746 -35.29830 -34.49370 -33.45799 -32.22213 -31.59188 -29.76068 -27.12534 -26.21546 -25.07762 -24.13876 -23.30083 -21.86859 -21.31029 -20.26713 -19.17135 -18.48722 -18.32783 -18.14197 -17.24631 -16.98552 -16.22641 -16.11541 -15.81197 -15.25266 -14.69696 -14.50670 -14.14026 -13.92917 -13.81485 -13.77064 -13.61180 -12.82504 -12.69990 -12.57481 -12.24551 -12.23830 -11.98232 -11.88178 -11.51676 -11.10409 -11.00219 -10.94222 -10.51424 -10.45884 -10.24621 -10.21725 -9.90890 -9.54552 -9.13346 -9.02185 -8.96127 -8.42919 -7.72094 -5.99917 -4.08529 0.40826 0.96443 2.05777 2.32338 2.41968 3.16153 3.31770 3.38786 3.40788 3.47810 3.71476 4.15901 4.27559 4.36354 4.44051 4.64927 4.88716 5.21284 5.27720 5.30404 5.34295 5.45029 5.47710 5.59273 5.77340 5.94014 6.12343 6.28732 6.48025 6.54160 6.62232 6.76536 6.95895 7.00407 7.16118 7.28390 7.39849 7.49122 7.71038 7.90035 8.03412 8.39225 8.45234 8.94736 9.10363 9.57135 11.05402 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002434 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.344915 B =11499.185117 C =11955.397530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.619 5.619 15 C 0.705 3.295 16 O -0.579 6.579 17 N -0.758 5.758 18 C 0.221 3.779 19 C -0.035 4.035 20 C -0.157 4.157 21 C -0.023 4.023 22 C 0.574 3.426 23 O -0.492 6.492 24 O -0.498 6.498 25 N -0.300 5.300 26 O 0.146 5.854 27 C 0.129 3.871 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.190 0.810 39 H 0.421 0.579 40 H 0.040 0.960 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -19.647 3.879 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.355 5.355 15 C 0.407 3.593 16 O -0.456 6.456 17 N -0.420 5.420 18 C 0.096 3.904 19 C -0.098 4.098 20 C -0.180 4.180 21 C -0.179 4.179 22 C 0.414 3.586 23 O -0.377 6.377 24 O -0.310 6.310 25 N 0.005 4.995 26 O 0.062 5.938 27 C 0.008 3.992 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.207 0.793 39 H 0.281 0.719 40 H 0.059 0.941 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.611 -19.294 3.116 21.357 hybrid contribution 0.714 0.038 1.008 1.236 sum -7.897 -19.256 4.124 21.217 Atomic orbital electron populations 1.69886 1.05705 1.26863 1.49262 1.25054 0.94893 0.99250 0.94830 0.86596 0.79814 0.83523 0.78077 1.20713 1.21171 1.19934 1.21068 0.92901 0.90097 1.51891 0.92369 1.18992 0.92637 0.92235 0.94134 0.95275 1.21620 0.98565 0.94018 1.00596 1.21951 0.98641 0.99204 0.97420 1.21513 0.93388 0.87300 0.98735 1.47802 1.03351 1.09084 1.75251 1.15815 0.82684 0.82519 0.78309 1.90949 1.61660 1.36374 1.56601 1.45296 1.05502 1.08306 1.82883 1.19445 0.81938 0.83579 1.05468 1.24617 1.03323 0.97371 0.84513 1.22523 1.03696 0.89365 1.02366 1.22223 1.10409 0.94909 0.90399 1.19113 0.72980 0.82284 0.84184 1.90950 1.47936 1.84709 1.14114 1.84599 1.80750 1.21325 1.44309 1.74401 1.12055 0.96562 1.16461 1.84901 1.61138 1.14702 1.33048 1.22239 0.98381 0.80249 0.98294 0.92628 0.93164 0.93010 0.92302 0.92078 0.92289 0.91961 0.76907 0.87570 0.88616 0.79284 0.71881 0.94129 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 11.40 55.43 0.63 -24.55 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.80 8.56 -34.44 -0.29 -14.10 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 12 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 13 C 0.11 1.66 6.43 -3.71 -0.02 1.64 16 14 N -0.62 -11.71 2.98 -178.47 -0.53 -12.24 16 15 C 0.71 13.13 8.30 -86.92 -0.72 12.41 16 16 O -0.58 -13.32 15.79 5.28 0.08 -13.24 16 17 N -0.76 -9.81 5.46 -66.41 -0.36 -10.18 16 18 C 0.22 2.29 6.24 -5.19 -0.03 2.26 16 19 C -0.04 -0.32 6.84 -35.35 -0.24 -0.56 16 20 C -0.16 -1.36 10.92 -39.07 -0.43 -1.78 16 21 C -0.02 -0.24 7.24 -82.54 -0.60 -0.83 16 22 C 0.57 5.46 8.36 34.84 0.29 5.75 16 23 O -0.49 -5.57 17.74 -19.19 -0.34 -5.92 16 24 O -0.50 -3.51 13.44 -40.37 -0.54 -4.05 16 25 N -0.30 -3.29 12.12 33.29 0.40 -2.88 16 26 O 0.15 1.49 11.18 17.24 0.19 1.68 16 27 C 0.13 3.01 5.38 -3.69 -0.02 2.99 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.66 5.57 -51.93 -0.29 0.37 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.39 4.25 5.92 -40.82 -0.24 4.00 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.42 0.72 9.11 45.56 0.42 1.14 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.12 3.40 5.17 -51.93 -0.27 3.13 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -33.86 351.13 -7.01 -40.87 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.15 Total: 3.62 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.67 Total: 5.67 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.14 Total: -49.85 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.61 Total: -21.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.86 -7.01 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.677 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds