Wall clock time and date at job start Tue Mar 31 2020 13:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48506 * 109.46804 * 270.00089 * 3 2 1 5 5 H 1.48500 * 109.47155 * 29.99602 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00084 * 3 2 1 7 7 C 1.37875 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00338 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49784 * 59.93247 * 9 7 2 11 11 C 1.53039 * 109.49846 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.53657 * 181.31299 * 11 9 7 13 13 C 1.53197 * 109.31348 * 298.63593 * 12 11 9 14 14 N 1.46923 * 108.89200 * 54.56697 * 13 12 11 15 15 C 1.34776 * 120.62907 * 126.46290 * 14 13 12 16 16 O 1.21592 * 119.99651 * 174.96113 * 15 14 13 17 17 N 1.34775 * 120.00225 * 354.95834 * 15 14 13 18 18 C 1.46502 * 120.00038 * 185.07564 * 17 15 14 19 19 C 1.50700 * 109.47031 * 180.02562 * 18 17 15 20 20 C 1.35301 * 126.65789 * 90.00472 * 19 18 17 21 21 C 1.42305 * 103.92008 * 179.97438 * 20 19 18 22 22 C 1.48240 * 126.94560 * 180.02562 * 21 20 19 23 23 O 1.21400 * 120.00164 * 359.97438 * 22 21 20 24 24 O 1.34655 * 119.99879 * 180.02562 * 22 21 20 25 25 N 1.31023 * 106.11016 * 359.97438 * 21 20 19 26 26 O 1.20900 * 111.43431 * 359.73933 * 25 21 20 27 27 C 1.46957 * 118.71242 * 306.63799 * 14 13 12 28 28 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.45713 * 61.29658 * 11 9 7 30 30 H 1.08995 * 109.45070 * 301.32992 * 11 9 7 31 31 H 1.09002 * 109.49601 * 178.68753 * 12 11 9 32 32 H 1.08996 * 109.50008 * 58.58655 * 12 11 9 33 33 H 1.09002 * 109.58190 * 174.42190 * 13 12 11 34 34 H 1.08998 * 109.58588 * 294.70094 * 13 12 11 35 35 H 0.96994 * 119.99906 * 5.07487 * 17 15 14 36 36 H 1.09001 * 109.47149 * 300.00641 * 18 17 15 37 37 H 1.09000 * 109.46922 * 60.00046 * 18 17 15 38 38 H 1.07999 * 128.04842 * 359.92028 * 20 19 18 39 39 H 0.96696 * 116.99782 * 180.02562 * 24 22 21 40 40 H 1.09005 * 109.46953 * 293.57143 * 27 14 13 41 41 H 1.09001 * 109.71186 * 173.29023 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6237 -2.5570 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0325 13 6 0.6058 -5.1002 1.2198 14 7 -0.2528 -3.9112 1.3077 15 6 -1.5889 -4.0367 1.4324 16 8 -2.2796 -3.0495 1.5962 17 7 -2.1594 -5.2564 1.3754 18 6 -3.6187 -5.3843 1.3991 19 6 -3.9964 -6.8414 1.3252 20 6 -4.1760 -7.6832 2.3691 21 6 -4.5172 -8.9211 1.7557 22 6 -4.8230 -10.2001 2.4400 23 8 -4.7955 -10.2618 3.6521 24 8 -5.1302 -11.2938 1.7170 25 7 -4.5075 -8.7018 0.4640 26 8 -4.2260 -7.5531 0.2131 27 6 0.3732 -2.5827 1.2532 28 1 -0.4850 0.8400 -0.0004 29 1 2.8563 -3.6183 0.9021 30 1 2.8871 -3.5917 -0.8774 31 1 2.1898 -5.8163 -0.0560 32 1 0.8508 -5.0231 -0.9211 33 1 -0.0140 -5.9944 1.1537 34 1 1.2397 -5.1595 2.1045 35 1 -1.6039 -6.0495 1.3187 36 1 -4.0061 -4.9552 2.3232 37 1 -4.0437 -4.8547 0.5465 38 1 -4.0816 -7.4665 3.4229 39 1 -5.3225 -12.1046 2.2076 40 1 0.9881 -2.4341 2.1409 41 1 -0.3985 -1.8141 1.2105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:02 Heat of formation + Delta-G solvation = -71.182600 kcal Electronic energy + Delta-G solvation = -26905.755273 eV Core-core repulsion = 22788.607876 eV Total energy + Delta-G solvation = -4117.147397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.41947 -41.27980 -41.25298 -38.56057 -37.39082 -36.45723 -35.35437 -35.17813 -33.62124 -32.82582 -31.43403 -28.20955 -26.99924 -26.85648 -25.59067 -24.07827 -23.41599 -22.04423 -21.74729 -20.53008 -19.44002 -19.15979 -19.09090 -18.51032 -18.01102 -17.69750 -17.17661 -16.77185 -16.62945 -16.41741 -15.56947 -15.23461 -15.16151 -15.13789 -14.91850 -14.57519 -14.36991 -14.25278 -13.79682 -13.61377 -13.47715 -12.87325 -12.86024 -12.80773 -12.64902 -12.25914 -12.22962 -12.19682 -11.85626 -11.84804 -11.59947 -11.30256 -10.97665 -10.88058 -10.73991 -10.47097 -10.24447 -9.24999 -8.06849 -6.23049 -0.34675 0.22905 1.40148 1.43360 1.44821 1.54984 1.58796 1.64047 1.96362 2.27437 2.45309 2.76315 3.05253 3.23082 3.42740 3.62926 3.90906 4.06612 4.19260 4.23290 4.32096 4.50956 4.57896 4.64981 4.71119 4.76370 4.84491 4.89474 5.14768 5.24523 5.29177 5.29806 5.34236 5.40863 5.60484 5.66273 5.92577 6.00181 6.16869 6.40280 6.59038 6.80317 6.89656 7.09857 7.46538 7.66154 8.96553 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002434 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.344915 B =11499.185117 C =11955.397530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.625 5.625 15 C 0.701 3.299 16 O -0.631 6.631 17 N -0.736 5.736 18 C 0.223 3.777 19 C -0.029 4.029 20 C -0.143 4.143 21 C -0.034 4.034 22 C 0.580 3.420 23 O -0.514 6.514 24 O -0.496 6.496 25 N -0.314 5.314 26 O 0.142 5.858 27 C 0.144 3.856 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.208 0.792 39 H 0.443 0.557 40 H 0.034 0.966 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 -22.007 4.459 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.012 4.012 14 N -0.361 5.361 15 C 0.403 3.597 16 O -0.511 6.511 17 N -0.397 5.397 18 C 0.098 3.902 19 C -0.092 4.092 20 C -0.165 4.165 21 C -0.189 4.189 22 C 0.421 3.579 23 O -0.401 6.401 24 O -0.311 6.311 25 N -0.010 5.010 26 O 0.058 5.942 27 C 0.021 3.979 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.225 0.775 39 H 0.307 0.693 40 H 0.052 0.948 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.761 -21.763 3.684 23.398 hybrid contribution 0.416 0.677 0.792 1.121 sum -7.346 -21.087 4.476 22.773 Atomic orbital electron populations 1.70077 1.07276 1.27222 1.50607 1.25859 0.95566 1.02750 0.94699 0.85604 0.78819 0.79378 0.78150 1.20259 1.21362 1.18744 1.21512 0.93248 0.91557 1.51047 0.92119 1.18919 0.93123 0.93599 0.92513 0.99381 1.21510 0.97702 0.94290 1.00831 1.21907 0.99023 0.98120 0.97404 1.21848 0.93621 0.86632 0.99125 1.47664 1.04158 1.08920 1.75358 1.15975 0.82371 0.83387 0.77974 1.90914 1.62812 1.38637 1.58786 1.45014 1.06787 1.06739 1.81197 1.19488 0.80158 0.84589 1.05955 1.24256 1.03909 0.96530 0.84466 1.22744 1.02195 0.88517 1.03045 1.22480 1.10387 0.95731 0.90323 1.19020 0.72482 0.82587 0.83785 1.90945 1.49149 1.85115 1.14913 1.84562 1.80076 1.21904 1.44518 1.74405 1.12703 0.96801 1.17071 1.84889 1.61212 1.14636 1.33432 1.21592 0.96863 0.81860 0.97579 0.93122 0.92488 0.93166 0.88041 0.92993 0.88307 0.90197 0.75239 0.86507 0.89048 0.77456 0.69303 0.94777 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.65 11.40 21.45 0.24 -54.40 16 2 C 0.01 0.60 5.30 84.65 0.45 1.05 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -28.97 8.56 25.60 0.22 -28.75 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.11 -3.92 5.11 30.62 0.16 -3.77 16 12 C -0.13 -3.48 6.08 30.67 0.19 -3.29 16 13 C 0.11 2.84 6.43 86.36 0.56 3.40 16 14 N -0.63 -23.42 2.98 -836.81 -2.49 -25.91 16 15 C 0.70 26.04 8.30 179.06 1.49 27.52 16 16 O -0.63 -30.00 15.79 -4.00 -0.06 -30.06 16 17 N -0.74 -17.77 5.46 -482.29 -2.63 -20.41 16 18 C 0.22 4.30 6.24 85.63 0.53 4.83 16 19 C -0.03 -0.46 6.84 25.01 0.17 -0.29 16 20 C -0.14 -2.11 10.92 22.60 0.25 -1.87 16 21 C -0.03 -0.61 7.24 42.94 0.31 -0.30 16 22 C 0.58 9.90 8.36 70.48 0.59 10.49 16 23 O -0.51 -10.72 17.74 20.16 0.36 -10.36 16 24 O -0.50 -5.94 13.44 -55.64 -0.75 -6.68 16 25 N -0.31 -6.34 12.12 -49.51 -0.60 -6.94 16 26 O 0.14 2.65 11.18 71.86 0.80 3.46 16 27 C 0.14 6.95 5.38 86.36 0.46 7.41 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.77 5.57 -2.39 -0.01 1.76 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 7.49 5.92 -92.71 -0.55 6.94 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.44 0.51 9.11 -74.06 -0.67 -0.17 16 40 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.08 4.54 5.17 -2.39 -0.01 4.53 16 Total: -1.00 -77.57 351.13 2.12 -75.46 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.12 Total: 11.80 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 5.34 Total: 18.26 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -5.48 Total: -107.67 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: 0.35 Total: -43.65 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.57 2.12 -75.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.273 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds