Wall clock time and date at job start Tue Mar 31 2020 13:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48492 * 109.46814 * 274.93043 * 3 2 1 5 5 H 1.48500 * 109.46997 * 34.92943 * 3 2 1 6 6 H 1.48498 * 109.46944 * 154.92883 * 3 2 1 7 7 C 1.37873 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 5.04878 * 7 2 1 9 9 C 1.50704 * 119.99701 * 184.77866 * 7 2 1 10 10 H 1.08996 * 109.49741 * 325.46864 * 9 7 2 11 11 C 1.53043 * 109.49531 * 205.40859 * 9 7 2 12 12 C 1.53039 * 109.53909 * 178.68341 * 11 9 7 13 13 C 1.53190 * 109.31183 * 61.36273 * 12 11 9 14 14 N 1.46923 * 108.77431 * 305.36449 * 13 12 11 15 15 C 1.34782 * 120.63201 * 233.60657 * 14 13 12 16 16 O 1.21586 * 120.00379 * 185.06835 * 15 14 13 17 17 N 1.34774 * 119.99806 * 5.07694 * 15 14 13 18 18 C 1.46504 * 120.00182 * 174.85812 * 17 15 14 19 19 C 1.50696 * 109.47451 * 180.02562 * 18 17 15 20 20 C 1.35305 * 126.66471 * 89.99630 * 19 18 17 21 21 C 1.42298 * 103.92509 * 179.97438 * 20 19 18 22 22 C 1.48235 * 126.94904 * 179.97438 * 21 20 19 23 23 O 1.21411 * 119.99775 * 0.02562 * 22 21 20 24 24 O 1.34648 * 120.00538 * 179.97438 * 22 21 20 25 25 N 1.31019 * 106.11176 * 359.97438 * 21 20 19 26 26 O 1.20907 * 111.43422 * 359.74694 * 25 21 20 27 27 C 1.46925 * 118.76699 * 53.59373 * 14 13 12 28 28 H 0.97000 * 119.99922 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46110 * 298.70374 * 11 9 7 30 30 H 1.08999 * 109.45977 * 58.66070 * 11 9 7 31 31 H 1.08997 * 109.49615 * 181.31773 * 12 11 9 32 32 H 1.09002 * 109.49318 * 301.41407 * 12 11 9 33 33 H 1.08991 * 109.58751 * 65.15602 * 13 12 11 34 34 H 1.09007 * 109.58459 * 185.57818 * 13 12 11 35 35 H 0.97001 * 120.00292 * 354.85680 * 17 15 14 36 36 H 1.09005 * 109.46835 * 300.00089 * 18 17 15 37 37 H 1.09000 * 109.47023 * 59.99686 * 18 17 15 38 38 H 1.08000 * 128.04232 * 359.96460 * 20 19 18 39 39 H 0.96701 * 117.00479 * 179.97438 * 24 22 21 40 40 H 1.09005 * 109.62144 * 186.63907 * 27 14 13 41 41 H 1.09004 * 109.56486 * 66.21130 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3924 2.1065 -1.3948 5 1 1.5026 2.6204 0.8016 6 1 3.5949 1.4124 0.5933 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0814 9 6 3.5076 -1.1962 0.1093 10 1 3.9112 -0.3270 -0.4100 11 6 4.0637 -2.4735 -0.5245 12 6 5.5919 -2.4614 -0.4439 13 6 6.0215 -2.4243 1.0261 14 7 5.3737 -1.2787 1.6792 15 6 6.1050 -0.3680 2.3519 16 8 5.5509 0.5237 2.9652 17 7 7.4505 -0.4456 2.3444 18 6 8.2485 0.6059 2.9799 19 6 9.7131 0.2835 2.8324 20 6 10.5244 0.6573 1.8161 21 6 11.7869 0.1000 2.1629 22 6 13.0485 0.2028 1.3915 23 8 13.0710 0.8154 0.3435 24 8 14.1698 -0.3823 1.8534 25 7 11.6090 -0.5224 3.3021 26 8 10.4667 -0.4238 3.6857 27 6 3.9137 -1.1440 1.5855 28 1 -0.4850 0.8401 -0.0004 29 1 3.6788 -3.3416 0.0105 30 1 3.7555 -2.5247 -1.5687 31 1 5.9882 -3.3602 -0.9162 32 1 5.9763 -1.5802 -0.9576 33 1 5.7161 -3.3470 1.5194 34 1 7.1044 -2.3158 1.0877 35 1 7.8906 -1.1978 1.9184 36 1 8.0372 1.5619 2.5007 37 1 7.9940 0.6658 4.0381 38 1 10.2723 1.2424 0.9440 39 1 14.9678 -0.2882 1.3154 40 1 3.6056 -0.1910 2.0156 41 1 3.4362 -1.9621 2.1249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:06 Heat of formation + Delta-G solvation = -45.586253 kcal Electronic energy + Delta-G solvation = -27008.295876 eV Core-core repulsion = 22892.258420 eV Total energy + Delta-G solvation = -4116.037456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.74928 -40.63236 -40.11890 -37.32351 -36.79100 -35.50056 -34.60161 -33.50388 -32.33644 -31.75320 -30.46057 -27.29333 -26.29911 -25.25688 -24.30599 -23.39601 -21.96633 -21.39723 -20.34746 -19.27756 -18.54679 -18.46837 -18.33842 -17.42807 -17.06806 -16.75339 -16.21534 -16.03400 -15.51528 -14.83443 -14.62484 -14.11356 -14.01263 -13.98880 -13.89212 -13.63813 -13.32151 -12.89760 -12.64347 -12.44077 -12.31805 -12.28984 -12.06295 -11.56973 -11.30825 -11.18807 -11.10710 -10.63814 -10.61077 -10.36344 -10.12869 -9.84438 -9.66425 -9.37659 -9.24463 -9.15052 -8.57793 -8.03088 -6.11874 -4.13040 0.32500 0.86487 1.98635 2.25350 2.30742 2.93885 3.31609 3.38345 3.42780 3.43954 3.51341 4.03174 4.05457 4.26712 4.43028 4.54339 4.80871 5.03758 5.15956 5.20297 5.21257 5.29565 5.32444 5.44343 5.72413 5.77336 5.93837 6.11173 6.19417 6.27910 6.38069 6.55253 6.62773 6.72143 6.86842 7.10022 7.13000 7.28040 7.38282 7.40097 7.72898 8.13635 8.47156 8.80184 8.93361 9.51238 11.00338 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.002723 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.816625 B =10279.049391 C =10471.015996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.869 3.131 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.115 3.885 14 N -0.621 5.621 15 C 0.706 3.294 16 O -0.587 6.587 17 N -0.755 5.755 18 C 0.221 3.779 19 C -0.039 4.039 20 C -0.154 4.154 21 C -0.022 4.022 22 C 0.573 3.427 23 O -0.490 6.490 24 O -0.498 6.498 25 N -0.299 5.299 26 O 0.145 5.855 27 C 0.129 3.871 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.191 0.809 39 H 0.422 0.578 40 H 0.083 0.917 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.452 -2.288 3.784 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.696 3.304 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.140 4.140 12 C -0.175 4.175 13 C -0.008 4.008 14 N -0.357 5.357 15 C 0.408 3.592 16 O -0.465 6.465 17 N -0.417 5.417 18 C 0.096 3.904 19 C -0.102 4.102 20 C -0.176 4.176 21 C -0.178 4.178 22 C 0.413 3.587 23 O -0.375 6.375 24 O -0.310 6.310 25 N 0.006 4.994 26 O 0.061 5.939 27 C 0.008 3.992 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.208 0.792 39 H 0.282 0.718 40 H 0.102 0.898 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.421 -2.062 4.914 25.974 hybrid contribution 0.929 1.021 -1.249 1.862 sum 26.350 -1.041 3.665 26.624 Atomic orbital electron populations 1.69909 1.06392 1.27148 1.49731 1.25067 0.94684 0.99130 0.93896 0.86965 0.81519 0.83774 0.78185 1.20649 1.21318 1.17601 1.20901 0.88638 0.94644 1.51128 0.90676 1.19497 0.96882 0.94225 0.90865 0.94861 1.21516 0.91643 0.99687 1.01204 1.22006 0.99183 1.01409 0.94949 1.21564 0.95597 0.89458 0.94209 1.47772 1.09132 1.24798 1.54047 1.15816 0.80477 0.82719 0.80223 1.90926 1.70454 1.37137 1.47956 1.45270 1.05264 1.27413 1.63738 1.19452 0.77834 0.91848 1.01287 1.24548 0.96829 0.98006 0.90830 1.22552 0.89395 1.03844 1.01854 1.22224 0.94804 1.05082 0.95664 1.19103 0.82190 0.75363 0.82010 1.90963 1.85216 1.39189 1.22159 1.84589 1.20492 1.70939 1.54983 1.74398 0.97491 1.15481 1.12032 1.84894 1.14128 1.53368 1.41462 1.22467 0.73799 1.02467 1.00512 0.92548 0.92666 0.92195 0.91788 0.92096 0.91430 0.91968 0.76638 0.87619 0.88458 0.79223 0.71805 0.89845 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.63 26.44 -169.99 -4.49 17.14 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.25 -6.23 5.79 56.52 0.33 -5.90 16 7 C -0.52 -13.76 8.87 -34.44 -0.31 -14.07 16 8 H 0.08 2.17 8.05 -52.49 -0.42 1.74 16 9 C 0.01 0.11 1.78 -91.65 -0.16 -0.05 16 10 H 0.03 0.77 5.71 -51.93 -0.30 0.48 16 11 C -0.10 -1.84 5.15 -26.69 -0.14 -1.97 16 12 C -0.14 -1.88 6.08 -26.61 -0.16 -2.04 16 13 C 0.12 1.47 6.43 -3.71 -0.02 1.45 16 14 N -0.62 -10.55 2.97 -178.50 -0.53 -11.08 16 15 C 0.71 11.86 8.29 -86.92 -0.72 11.14 16 16 O -0.59 -12.28 15.78 5.29 0.08 -12.20 16 17 N -0.76 -8.69 5.46 -66.41 -0.36 -9.06 16 18 C 0.22 2.02 6.24 -5.19 -0.03 1.98 16 19 C -0.04 -0.31 6.84 -35.36 -0.24 -0.56 16 20 C -0.15 -1.24 10.92 -39.07 -0.43 -1.67 16 21 C -0.02 -0.21 7.24 -82.55 -0.60 -0.80 16 22 C 0.57 5.21 8.36 34.84 0.29 5.50 16 23 O -0.49 -5.44 17.74 -19.20 -0.34 -5.78 16 24 O -0.50 -3.29 13.44 -40.35 -0.54 -3.83 16 25 N -0.30 -3.01 12.12 33.29 0.40 -2.61 16 26 O 0.15 1.31 11.18 17.23 0.19 1.51 16 27 C 0.13 2.69 5.40 -3.71 -0.02 2.67 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.60 5.57 -51.93 -0.29 0.31 16 35 H 0.40 3.70 5.92 -40.82 -0.24 3.45 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.42 0.57 9.11 45.56 0.42 0.99 16 40 H 0.08 1.99 5.56 -51.93 -0.29 1.70 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -35.19 347.58 -6.35 -41.54 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.14 Total: 1.57 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.64 Total: 3.61 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.28 Total: -48.80 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.61 Total: -20.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.49 Total: 17.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.19 -6.35 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.042 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds