Wall clock time and date at job start Tue Mar 31 2020 13:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48492 * 109.46814 * 274.93043 * 3 2 1 5 5 H 1.48500 * 109.46997 * 34.92943 * 3 2 1 6 6 H 1.48498 * 109.46944 * 154.92883 * 3 2 1 7 7 C 1.37873 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 5.04878 * 7 2 1 9 9 C 1.50704 * 119.99701 * 184.77866 * 7 2 1 10 10 H 1.08996 * 109.49741 * 325.46864 * 9 7 2 11 11 C 1.53043 * 109.49531 * 205.40859 * 9 7 2 12 12 C 1.53039 * 109.53909 * 178.68341 * 11 9 7 13 13 C 1.53190 * 109.31183 * 61.36273 * 12 11 9 14 14 N 1.46923 * 108.77431 * 305.36449 * 13 12 11 15 15 C 1.34782 * 120.63201 * 233.60657 * 14 13 12 16 16 O 1.21586 * 120.00379 * 185.06835 * 15 14 13 17 17 N 1.34774 * 119.99806 * 5.07694 * 15 14 13 18 18 C 1.46504 * 120.00182 * 174.85812 * 17 15 14 19 19 C 1.50696 * 109.47451 * 180.02562 * 18 17 15 20 20 C 1.35305 * 126.66471 * 89.99630 * 19 18 17 21 21 C 1.42298 * 103.92509 * 179.97438 * 20 19 18 22 22 C 1.48235 * 126.94904 * 179.97438 * 21 20 19 23 23 O 1.21411 * 119.99775 * 0.02562 * 22 21 20 24 24 O 1.34648 * 120.00538 * 179.97438 * 22 21 20 25 25 N 1.31019 * 106.11176 * 359.97438 * 21 20 19 26 26 O 1.20907 * 111.43422 * 359.74694 * 25 21 20 27 27 C 1.46925 * 118.76699 * 53.59373 * 14 13 12 28 28 H 0.97000 * 119.99922 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46110 * 298.70374 * 11 9 7 30 30 H 1.08999 * 109.45977 * 58.66070 * 11 9 7 31 31 H 1.08997 * 109.49615 * 181.31773 * 12 11 9 32 32 H 1.09002 * 109.49318 * 301.41407 * 12 11 9 33 33 H 1.08991 * 109.58751 * 65.15602 * 13 12 11 34 34 H 1.09007 * 109.58459 * 185.57818 * 13 12 11 35 35 H 0.97001 * 120.00292 * 354.85680 * 17 15 14 36 36 H 1.09005 * 109.46835 * 300.00089 * 18 17 15 37 37 H 1.09000 * 109.47023 * 59.99686 * 18 17 15 38 38 H 1.08000 * 128.04232 * 359.96460 * 20 19 18 39 39 H 0.96701 * 117.00479 * 179.97438 * 24 22 21 40 40 H 1.09005 * 109.62144 * 186.63907 * 27 14 13 41 41 H 1.09004 * 109.56486 * 66.21130 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3924 2.1065 -1.3948 5 1 1.5026 2.6204 0.8016 6 1 3.5949 1.4124 0.5933 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0814 9 6 3.5076 -1.1962 0.1093 10 1 3.9112 -0.3270 -0.4100 11 6 4.0637 -2.4735 -0.5245 12 6 5.5919 -2.4614 -0.4439 13 6 6.0215 -2.4243 1.0261 14 7 5.3737 -1.2787 1.6792 15 6 6.1050 -0.3680 2.3519 16 8 5.5509 0.5237 2.9652 17 7 7.4505 -0.4456 2.3444 18 6 8.2485 0.6059 2.9799 19 6 9.7131 0.2835 2.8324 20 6 10.5244 0.6573 1.8161 21 6 11.7869 0.1000 2.1629 22 6 13.0485 0.2028 1.3915 23 8 13.0710 0.8154 0.3435 24 8 14.1698 -0.3823 1.8534 25 7 11.6090 -0.5224 3.3021 26 8 10.4667 -0.4238 3.6857 27 6 3.9137 -1.1440 1.5855 28 1 -0.4850 0.8401 -0.0004 29 1 3.6788 -3.3416 0.0105 30 1 3.7555 -2.5247 -1.5687 31 1 5.9882 -3.3602 -0.9162 32 1 5.9763 -1.5802 -0.9576 33 1 5.7161 -3.3470 1.5194 34 1 7.1044 -2.3158 1.0877 35 1 7.8906 -1.1978 1.9184 36 1 8.0372 1.5619 2.5007 37 1 7.9940 0.6658 4.0381 38 1 10.2723 1.2424 0.9440 39 1 14.9678 -0.2882 1.3154 40 1 3.6056 -0.1910 2.0156 41 1 3.4362 -1.9621 2.1249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:05 Heat of formation + Delta-G solvation = -72.273325 kcal Electronic energy + Delta-G solvation = -27009.453114 eV Core-core repulsion = 22892.258420 eV Total energy + Delta-G solvation = -4117.194695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.43780 -41.40055 -41.27225 -38.68153 -37.40109 -36.52485 -35.35694 -35.17778 -33.75301 -32.88541 -32.01615 -28.26460 -27.02344 -26.90900 -25.66151 -24.09212 -23.38006 -22.05696 -21.70770 -20.57300 -19.60414 -19.16950 -19.12679 -18.86663 -18.25689 -17.71767 -17.25872 -16.78689 -16.68912 -16.42506 -15.59914 -15.32565 -15.27646 -15.20579 -14.86840 -14.73837 -14.58780 -14.25487 -14.12183 -13.76717 -13.49626 -13.00679 -12.88381 -12.83869 -12.79327 -12.50064 -12.27012 -11.99187 -11.86388 -11.79097 -11.55216 -11.41683 -11.05032 -11.02154 -10.81629 -10.68813 -10.31594 -9.38822 -8.30957 -6.33488 -0.35529 0.20885 1.30230 1.38149 1.39129 1.49828 1.55812 1.61338 1.89911 2.15138 2.33789 2.74806 2.95512 3.09329 3.40812 3.61394 3.89455 4.01871 4.15437 4.19310 4.23302 4.47920 4.52750 4.56486 4.64418 4.69682 4.71399 4.80357 5.01290 5.06185 5.15003 5.23848 5.25953 5.31206 5.46880 5.62821 5.68012 5.74262 6.00634 6.33850 6.57997 6.76084 6.79241 6.98157 7.33440 7.53892 8.85202 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.002723 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.816625 B =10279.049391 C =10471.015996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.510 4.510 8 H 0.042 0.958 9 C 0.005 3.995 10 H 0.024 0.976 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.111 3.889 14 N -0.626 5.626 15 C 0.704 3.296 16 O -0.633 6.633 17 N -0.734 5.734 18 C 0.222 3.778 19 C -0.029 4.029 20 C -0.144 4.144 21 C -0.034 4.034 22 C 0.578 3.422 23 O -0.515 6.515 24 O -0.496 6.496 25 N -0.313 5.313 26 O 0.147 5.853 27 C 0.141 3.859 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.411 0.589 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.205 0.795 39 H 0.443 0.557 40 H 0.049 0.951 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.951 -2.832 3.517 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.173 1.173 7 C -0.548 4.548 8 H 0.060 0.940 9 C -0.015 4.015 10 H 0.042 0.958 11 C -0.139 4.139 12 C -0.166 4.166 13 C -0.011 4.011 14 N -0.362 5.362 15 C 0.405 3.595 16 O -0.515 6.515 17 N -0.396 5.396 18 C 0.098 3.902 19 C -0.092 4.092 20 C -0.167 4.167 21 C -0.190 4.190 22 C 0.420 3.580 23 O -0.403 6.403 24 O -0.311 6.311 25 N -0.008 5.008 26 O 0.062 5.938 27 C 0.018 3.982 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.250 0.750 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.222 0.778 39 H 0.307 0.693 40 H 0.068 0.932 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 29.032 -2.655 4.626 29.518 hybrid contribution -0.097 1.080 -1.126 1.563 sum 28.934 -1.575 3.500 29.188 Atomic orbital electron populations 1.70037 1.07984 1.27882 1.52408 1.25806 0.95262 1.02450 0.94256 0.85989 0.80136 0.79912 0.78369 1.19548 1.21925 1.17339 1.21246 0.91408 0.93052 1.49143 0.93974 1.19445 0.93731 0.96234 0.92090 0.95778 1.21431 0.95181 0.97132 1.00172 1.21947 0.95357 1.03314 0.95977 1.21896 0.97655 0.88373 0.93202 1.47609 1.07592 1.26266 1.54729 1.15935 0.81847 0.81933 0.79780 1.90898 1.71776 1.38952 1.49845 1.45025 1.03397 1.28210 1.62935 1.19516 0.77948 0.91351 1.01412 1.24241 0.96114 0.98138 0.90710 1.22747 0.88725 1.03202 1.02032 1.22444 0.95534 1.05310 0.95683 1.19062 0.82593 0.74885 0.81478 1.90955 1.85670 1.40444 1.23183 1.84555 1.20962 1.70157 1.55388 1.74402 0.97877 1.16051 1.12468 1.84884 1.13957 1.53360 1.41555 1.21831 0.76890 1.00521 0.98942 0.92587 0.92629 0.92938 0.87954 0.92159 0.89972 0.87890 0.75005 0.86902 0.88165 0.77768 0.69308 0.93229 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.02 1.17 5.47 84.65 0.46 1.64 16 3 Si 0.93 45.92 26.44 68.60 1.81 47.73 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.25 -12.12 5.79 99.48 0.58 -11.54 16 7 C -0.51 -28.05 8.87 25.60 0.23 -27.83 16 8 H 0.04 2.54 8.05 -2.91 -0.02 2.51 16 9 C 0.00 0.21 1.78 -11.46 -0.02 0.19 16 10 H 0.02 1.10 5.71 -2.39 -0.01 1.09 16 11 C -0.10 -3.46 5.15 30.62 0.16 -3.30 16 12 C -0.13 -2.99 6.08 30.67 0.19 -2.80 16 13 C 0.11 2.36 6.43 86.36 0.56 2.91 16 14 N -0.63 -19.91 2.97 -836.91 -2.49 -22.40 16 15 C 0.70 22.19 8.29 179.05 1.49 23.67 16 16 O -0.63 -26.05 15.78 -3.99 -0.06 -26.11 16 17 N -0.73 -14.49 5.46 -482.29 -2.63 -17.12 16 18 C 0.22 3.43 6.24 85.63 0.53 3.97 16 19 C -0.03 -0.38 6.84 25.01 0.17 -0.21 16 20 C -0.14 -1.91 10.92 22.60 0.25 -1.66 16 21 C -0.03 -0.57 7.24 42.93 0.31 -0.26 16 22 C 0.58 9.31 8.36 70.48 0.59 9.90 16 23 O -0.52 -10.48 17.74 20.12 0.36 -10.12 16 24 O -0.50 -5.44 13.44 -55.57 -0.75 -6.19 16 25 N -0.31 -5.59 12.12 -49.51 -0.60 -6.19 16 26 O 0.15 2.28 11.18 71.82 0.80 3.08 16 27 C 0.14 5.89 5.40 86.36 0.47 6.36 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.38 5.57 -2.38 -0.01 1.37 16 35 H 0.41 5.78 5.92 -92.71 -0.55 5.24 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.44 0.17 9.11 -74.06 -0.67 -0.50 16 40 H 0.05 2.40 5.56 -2.38 -0.01 2.39 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -79.57 347.58 1.87 -77.70 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -0.25 Total: 5.37 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.37 Total: 12.59 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -5.42 Total: -104.06 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: 0.35 Total: -39.34 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.81 Total: 47.73 kcal Total: -79.57 1.87 -77.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.429 kcal (2) G-P(sol) polarization free energy of solvation -79.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds