Wall clock time and date at job start Tue Mar 31 2020 14:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 126.28995 * 2 1 4 4 C 1.47425 * 126.41654 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99758 * 359.71845 * 4 3 2 6 6 N 1.34778 * 120.00209 * 179.72057 * 4 3 2 7 7 C 1.46499 * 119.99996 * 180.02562 * 6 4 3 8 8 C 1.50697 * 110.56823 * 61.22042 * 7 6 4 9 9 O 1.20827 * 119.99846 * 143.77801 * 8 7 6 10 10 O 1.34229 * 119.99858 * 323.77803 * 8 7 6 11 11 C 1.54510 * 110.50915 * 183.90146 * 7 6 4 12 12 C 1.54486 * 104.06135 * 118.64254 * 11 7 6 13 13 O 1.44421 * 104.80269 * 336.02090 * 12 11 7 14 14 C 1.44419 * 105.27785 * 40.51394 * 13 12 11 15 15 C 1.41290 * 107.16898 * 179.76232 * 3 2 1 16 16 N 1.30448 * 108.02544 * 0.23256 * 15 3 2 17 17 N 1.34263 * 126.29193 * 180.17140 * 2 1 3 18 18 C 1.46500 * 125.75448 * 359.97438 * 17 2 1 19 19 C 1.50694 * 109.47175 * 270.26390 * 18 17 2 20 20 H 1.08008 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00233 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99832 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47399 * 59.99902 * 23 21 19 25 25 H 1.48502 * 109.47135 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47442 * 299.99905 * 23 21 19 27 27 H 1.08998 * 109.46956 * 90.03251 * 1 2 3 28 28 H 1.09008 * 109.47041 * 210.03174 * 1 2 3 29 29 H 1.08993 * 109.47374 * 330.02793 * 1 2 3 30 30 H 0.97001 * 119.99900 * 359.97438 * 6 4 3 31 31 H 0.96698 * 116.99915 * 180.02562 * 10 8 7 32 32 H 1.09004 * 110.51047 * 237.28473 * 11 7 6 33 33 H 1.08993 * 110.51320 * 0.02562 * 11 7 6 34 34 H 1.09003 * 110.36984 * 217.18794 * 12 11 7 35 35 H 1.09005 * 110.46644 * 94.90209 * 12 11 7 36 36 H 1.09006 * 110.37190 * 200.65887 * 14 13 12 37 37 H 1.08993 * 110.37353 * 78.31874 * 14 13 12 38 38 H 1.08003 * 125.98526 * 180.27453 * 15 3 2 39 39 H 1.08997 * 109.46960 * 30.26675 * 18 17 2 40 40 H 1.09002 * 109.47185 * 150.26370 * 18 17 2 41 41 H 0.96997 * 120.00331 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 -0.0041 6 7 2.7999 3.5107 0.0062 7 6 2.3643 4.9094 0.0072 8 6 1.5535 5.2105 1.2413 9 8 1.6471 6.2893 1.7773 10 8 0.7273 4.2802 1.7449 11 6 3.5823 5.8557 -0.0845 12 6 3.3581 6.6294 -1.4028 13 8 2.5098 5.7701 -2.1951 14 6 1.5484 5.2233 -1.2665 15 6 3.6590 0.6499 0.0056 16 7 3.6341 -0.6544 0.0037 17 7 2.3017 -1.0822 -0.0032 18 6 1.8501 -2.4758 -0.0069 19 6 1.6896 -2.9556 1.4126 20 1 1.9030 -2.2891 2.2353 21 6 1.2712 -4.2456 1.6612 22 7 1.0118 -5.0573 0.6596 23 14 1.0729 -4.8404 3.4208 24 1 0.0692 -3.9971 4.1183 25 1 0.6150 -6.2531 3.4172 26 1 2.3763 -4.7439 4.1259 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5144 29 1 -0.3634 0.8902 0.5134 30 1 3.7461 3.2973 0.0102 31 1 0.2276 4.5195 2.5375 32 1 3.5979 6.5414 0.7628 33 1 4.5084 5.2829 -0.1311 34 1 4.3080 6.7974 -1.9103 35 1 2.8599 7.5790 -1.2074 36 1 1.1081 4.3111 -1.6693 37 1 0.7719 5.9564 -1.0486 38 1 4.5448 1.2677 0.0112 39 1 0.8936 -2.5464 -0.5247 40 1 2.5868 -3.0952 -0.5186 41 1 0.7179 -5.9650 0.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574296464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:10 Heat of formation + Delta-G solvation = -92.858093 kcal Electronic energy + Delta-G solvation = -27919.638350 eV Core-core repulsion = 23801.551033 eV Total energy + Delta-G solvation = -4118.087317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42058 -40.67681 -39.20322 -38.33082 -36.17478 -34.70528 -33.90641 -32.16904 -31.46188 -30.94303 -29.38323 -27.25000 -26.61858 -24.53779 -23.64931 -23.34422 -22.16812 -20.59786 -19.73715 -19.12403 -18.37960 -17.50681 -17.18706 -16.83936 -16.60987 -16.17339 -15.36193 -15.24468 -15.09457 -14.80902 -14.52222 -14.33806 -13.88280 -13.62588 -13.20879 -13.03502 -12.90299 -12.58100 -12.49322 -12.12400 -12.10155 -12.05074 -11.79636 -11.69814 -11.50021 -11.44576 -11.15525 -10.91964 -10.89989 -10.38883 -10.22410 -10.18933 -9.97784 -9.40628 -9.18972 -8.72945 -8.61441 -7.95725 -6.35614 -4.43886 1.86147 2.14531 2.70791 2.80841 2.97182 3.18285 3.22629 3.25629 3.43741 3.63034 3.82337 3.87207 4.22335 4.37332 4.64517 4.71118 4.92756 4.97267 5.05115 5.15326 5.26676 5.32261 5.37277 5.40904 5.53430 5.58842 5.74533 5.90162 6.07852 6.19690 6.35260 6.37495 6.51097 6.55947 6.76070 6.87711 7.12776 7.53133 7.55186 7.74933 7.75726 7.76413 8.34494 8.51290 8.61665 9.23210 10.72500 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.003054 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.977993 B = 9166.652301 C = 9592.009942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.168 3.832 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.523 6.523 6 N -0.721 5.721 7 C 0.161 3.839 8 C 0.486 3.514 9 O -0.521 6.521 10 O -0.471 6.471 11 C -0.153 4.153 12 C 0.045 3.955 13 O -0.362 6.362 14 C 0.054 3.946 15 C 0.056 3.944 16 N -0.295 5.295 17 N -0.314 5.314 18 C 0.251 3.749 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.405 0.595 31 H 0.401 0.599 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.174 0.826 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 20.328 -2.282 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.031 3.969 3 C -0.346 4.346 4 C 0.396 3.604 5 O -0.399 6.399 6 N -0.377 5.377 7 C 0.071 3.929 8 C 0.326 3.674 9 O -0.411 6.411 10 O -0.279 6.279 11 C -0.190 4.190 12 C -0.032 4.032 13 O -0.280 6.280 14 C -0.024 4.024 15 C -0.131 4.131 16 N -0.115 5.115 17 N -0.091 5.091 18 C 0.134 3.866 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.241 0.759 31 H 0.259 0.741 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.191 0.809 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.779 19.163 -2.781 19.563 hybrid contribution -0.251 0.343 1.812 1.861 sum 2.528 19.506 -0.970 19.693 Atomic orbital electron populations 1.20624 0.86782 1.04941 1.03267 1.21465 0.94966 0.86426 0.94029 1.19566 0.93135 0.92157 1.29752 1.17311 0.85074 0.83706 0.74329 1.90714 1.16120 1.83899 1.49171 1.45813 1.10441 1.02791 1.78671 1.21288 0.94894 0.84766 0.91951 1.23405 0.77678 0.81755 0.84542 1.90703 1.65284 1.25274 1.59792 1.84950 1.53012 1.44414 1.45531 1.23310 0.96187 0.98345 1.01196 1.23472 0.95977 0.93659 0.90080 1.89222 1.45038 1.62738 1.31051 1.23743 0.91035 1.00656 0.86993 1.23717 0.96325 0.92677 1.00357 1.77145 0.98691 1.12243 1.23379 1.49385 1.02463 1.08331 1.48880 1.19847 0.96425 0.70896 0.99400 1.21218 1.47652 0.98172 0.91015 0.91703 1.24922 0.94424 0.95983 0.98280 1.69899 1.44358 1.07246 1.31138 0.86379 0.78884 0.77775 0.83478 1.19836 1.20866 1.19906 0.90527 0.89965 0.88426 0.75889 0.74115 0.87406 0.88574 0.88085 0.91422 0.86160 0.91118 0.80867 0.92536 0.92500 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.34 36.01 0.34 -1.35 16 2 C 0.17 3.28 7.01 -81.60 -0.57 2.71 16 3 C -0.33 -5.69 6.13 -105.07 -0.64 -6.34 16 4 C 0.60 9.09 6.59 -12.52 -0.08 9.01 16 5 O -0.52 -8.59 10.77 -18.82 -0.20 -8.79 16 6 N -0.72 -8.23 5.15 -48.28 -0.25 -8.48 16 7 C 0.16 1.72 0.99 -131.40 -0.13 1.59 16 8 C 0.49 5.88 7.08 36.00 0.25 6.14 16 9 O -0.52 -6.95 16.29 -18.75 -0.31 -7.25 16 10 O -0.47 -5.74 9.87 -47.23 -0.47 -6.21 16 11 C -0.15 -1.19 6.40 -25.16 -0.16 -1.35 16 12 C 0.05 0.34 7.63 37.94 0.29 0.63 16 13 O -0.36 -3.98 11.65 -35.23 -0.41 -4.39 16 14 C 0.05 0.61 6.45 37.94 0.24 0.85 16 15 C 0.06 0.94 11.50 -16.98 -0.20 0.74 16 16 N -0.29 -6.16 12.50 30.86 0.39 -5.78 16 17 N -0.31 -6.90 3.56 -57.78 -0.21 -7.10 16 18 C 0.25 6.14 5.78 -5.20 -0.03 6.11 16 19 C -0.54 -14.37 9.39 -34.44 -0.32 -14.69 16 20 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 23 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.49 7.71 -51.92 -0.40 1.09 16 29 H 0.10 1.62 6.50 -51.93 -0.34 1.29 16 30 H 0.40 3.66 7.10 -40.82 -0.29 3.37 16 31 H 0.40 3.21 9.10 45.56 0.41 3.63 16 32 H 0.11 0.87 6.74 -51.93 -0.35 0.52 16 33 H 0.10 0.56 7.53 -51.93 -0.39 0.17 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.12 1.56 6.48 -51.93 -0.34 1.22 16 37 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 38 H 0.17 2.02 7.50 -52.48 -0.39 1.63 16 39 H 0.06 1.37 7.64 -51.93 -0.40 0.97 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -32.45 346.52 -5.75 -38.20 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.12 Total: 6.87 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.11 Total: 5.76 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.67 Total: -44.92 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.38 Total: -26.64 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.45 -5.75 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574296464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.659 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds