Wall clock time and date at job start Tue Mar 31 2020 14:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38042 * 126.28995 * 2 1 4 4 C 1.47425 * 126.41654 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99758 * 359.71845 * 4 3 2 6 6 N 1.34778 * 120.00209 * 179.72057 * 4 3 2 7 7 C 1.46499 * 119.99996 * 180.02562 * 6 4 3 8 8 C 1.50697 * 110.56823 * 61.22042 * 7 6 4 9 9 O 1.20827 * 119.99846 * 143.77801 * 8 7 6 10 10 O 1.34229 * 119.99858 * 323.77803 * 8 7 6 11 11 C 1.54510 * 110.50915 * 183.90146 * 7 6 4 12 12 C 1.54486 * 104.06135 * 118.64254 * 11 7 6 13 13 O 1.44421 * 104.80269 * 336.02090 * 12 11 7 14 14 C 1.44419 * 105.27785 * 40.51394 * 13 12 11 15 15 C 1.41290 * 107.16898 * 179.76232 * 3 2 1 16 16 N 1.30448 * 108.02544 * 0.23256 * 15 3 2 17 17 N 1.34263 * 126.29193 * 180.17140 * 2 1 3 18 18 C 1.46500 * 125.75448 * 359.97438 * 17 2 1 19 19 C 1.50694 * 109.47175 * 270.26390 * 18 17 2 20 20 H 1.08008 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.37883 * 120.00233 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99832 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47399 * 59.99902 * 23 21 19 25 25 H 1.48502 * 109.47135 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47442 * 299.99905 * 23 21 19 27 27 H 1.08998 * 109.46956 * 90.03251 * 1 2 3 28 28 H 1.09008 * 109.47041 * 210.03174 * 1 2 3 29 29 H 1.08993 * 109.47374 * 330.02793 * 1 2 3 30 30 H 0.97001 * 119.99900 * 359.97438 * 6 4 3 31 31 H 0.96698 * 116.99915 * 180.02562 * 10 8 7 32 32 H 1.09004 * 110.51047 * 237.28473 * 11 7 6 33 33 H 1.08993 * 110.51320 * 0.02562 * 11 7 6 34 34 H 1.09003 * 110.36984 * 217.18794 * 12 11 7 35 35 H 1.09005 * 110.46644 * 94.90209 * 12 11 7 36 36 H 1.09006 * 110.37190 * 200.65887 * 14 13 12 37 37 H 1.08993 * 110.37353 * 78.31874 * 14 13 12 38 38 H 1.08003 * 125.98526 * 180.27453 * 15 3 2 39 39 H 1.08997 * 109.46960 * 30.26675 * 18 17 2 40 40 H 1.09002 * 109.47185 * 150.26370 * 18 17 2 41 41 H 0.96997 * 120.00331 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 -0.0041 6 7 2.7999 3.5107 0.0062 7 6 2.3643 4.9094 0.0072 8 6 1.5535 5.2105 1.2413 9 8 1.6471 6.2893 1.7773 10 8 0.7273 4.2802 1.7449 11 6 3.5823 5.8557 -0.0845 12 6 3.3581 6.6294 -1.4028 13 8 2.5098 5.7701 -2.1951 14 6 1.5484 5.2233 -1.2665 15 6 3.6590 0.6499 0.0056 16 7 3.6341 -0.6544 0.0037 17 7 2.3017 -1.0822 -0.0032 18 6 1.8501 -2.4758 -0.0069 19 6 1.6896 -2.9556 1.4126 20 1 1.9030 -2.2891 2.2353 21 6 1.2712 -4.2456 1.6612 22 7 1.0118 -5.0573 0.6596 23 14 1.0729 -4.8404 3.4208 24 1 0.0692 -3.9971 4.1183 25 1 0.6150 -6.2531 3.4172 26 1 2.3763 -4.7439 4.1259 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5144 29 1 -0.3634 0.8902 0.5134 30 1 3.7461 3.2973 0.0102 31 1 0.2276 4.5195 2.5375 32 1 3.5979 6.5414 0.7628 33 1 4.5084 5.2829 -0.1311 34 1 4.3080 6.7974 -1.9103 35 1 2.8599 7.5790 -1.2074 36 1 1.1081 4.3111 -1.6693 37 1 0.7719 5.9564 -1.0486 38 1 4.5448 1.2677 0.0112 39 1 0.8936 -2.5464 -0.5247 40 1 2.5868 -3.0952 -0.5186 41 1 0.7179 -5.9650 0.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574296464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:10 Heat of formation + Delta-G solvation = -117.107999 kcal Electronic energy + Delta-G solvation = -27920.689905 eV Core-core repulsion = 23801.551033 eV Total energy + Delta-G solvation = -4119.138872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.46927 -41.98762 -40.14343 -39.38711 -37.11860 -35.84222 -35.64652 -33.82895 -32.78067 -32.01023 -30.28805 -28.94705 -28.05204 -25.56330 -25.22472 -24.30747 -23.33186 -21.70523 -20.87400 -20.49315 -19.38825 -18.85621 -18.49316 -18.26672 -17.62171 -17.01197 -16.75906 -16.30770 -16.17960 -16.10773 -16.02585 -15.54074 -15.15937 -14.91643 -14.37131 -14.25684 -14.01783 -13.89314 -13.72329 -13.57819 -13.50312 -13.07605 -12.97672 -12.91971 -12.77605 -12.69525 -12.54689 -12.29088 -12.16042 -11.90579 -11.84260 -11.66179 -10.95554 -10.75491 -10.66229 -10.23254 -10.19356 -9.42537 -8.37052 -6.53632 0.72568 0.94448 1.35651 1.39288 1.40495 1.48335 1.66803 1.92760 2.16812 2.33442 2.61857 2.91723 2.95054 3.08550 3.57903 3.78432 3.79889 4.02051 4.07816 4.15458 4.18547 4.25998 4.34676 4.61312 4.64498 4.70973 4.77406 4.81796 4.82926 4.87065 4.92597 5.11182 5.20349 5.33472 5.49714 5.50818 5.64321 5.71358 5.76038 6.07951 6.54356 6.55931 6.88394 6.92234 7.17576 7.36744 8.70544 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.003054 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.977993 B = 9166.652301 C = 9592.009942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.148 3.852 3 C -0.326 4.326 4 C 0.608 3.392 5 O -0.538 6.538 6 N -0.704 5.704 7 C 0.158 3.842 8 C 0.486 3.514 9 O -0.536 6.536 10 O -0.485 6.485 11 C -0.145 4.145 12 C 0.041 3.959 13 O -0.378 6.378 14 C 0.056 3.944 15 C 0.077 3.923 16 N -0.338 5.338 17 N -0.340 5.340 18 C 0.268 3.732 19 C -0.556 4.556 20 H 0.052 0.948 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.273 1.273 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.419 0.581 31 H 0.416 0.584 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.226 0.774 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 22.283 -1.623 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 C -0.342 4.342 4 C 0.397 3.603 5 O -0.415 6.415 6 N -0.361 5.361 7 C 0.069 3.931 8 C 0.328 3.672 9 O -0.426 6.426 10 O -0.295 6.295 11 C -0.183 4.183 12 C -0.035 4.035 13 O -0.297 6.297 14 C -0.022 4.022 15 C -0.110 4.110 16 N -0.158 5.158 17 N -0.117 5.117 18 C 0.150 3.850 19 C -0.595 4.595 20 H 0.071 0.929 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.199 1.199 26 H -0.198 1.198 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.258 0.742 31 H 0.276 0.724 32 H 0.127 0.873 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.917 21.154 -2.120 21.618 hybrid contribution -0.582 -0.103 1.569 1.676 sum 3.335 21.051 -0.552 21.321 Atomic orbital electron populations 1.20589 0.85846 1.04340 1.03979 1.21962 0.95929 0.86628 0.94265 1.19863 0.93124 0.92877 1.28292 1.17038 0.85280 0.83431 0.74532 1.90712 1.16967 1.84011 1.49827 1.45583 1.10624 1.02588 1.77291 1.21471 0.96079 0.84495 0.91103 1.23611 0.77518 0.81449 0.84668 1.90697 1.65811 1.25759 1.60329 1.84921 1.53252 1.44814 1.46539 1.23369 0.95778 0.97866 1.01250 1.23722 0.96662 0.93260 0.89870 1.89209 1.45376 1.63400 1.31719 1.23599 0.91453 0.99984 0.87160 1.24526 0.97783 0.91618 0.97062 1.77096 0.98403 1.14536 1.25755 1.49093 1.03413 1.07737 1.51452 1.19328 0.95194 0.72486 0.98031 1.21382 1.47958 0.98477 0.91638 0.92946 1.25725 0.93853 0.95969 1.02190 1.69986 1.44822 1.07627 1.33043 0.85417 0.78827 0.77659 0.78696 1.19086 1.19866 1.19845 0.89192 0.91553 0.87764 0.74219 0.72382 0.87322 0.85981 0.85501 0.90847 0.88152 0.90917 0.75773 0.93252 0.95183 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.12 9.34 71.24 0.67 -2.46 16 2 C 0.15 5.79 7.01 42.14 0.30 6.09 16 3 C -0.33 -10.80 6.13 -20.15 -0.12 -10.92 16 4 C 0.61 17.17 6.59 86.66 0.57 17.74 16 5 O -0.54 -17.07 10.77 18.98 0.20 -16.87 16 6 N -0.70 -14.11 5.15 -424.91 -2.19 -16.29 16 7 C 0.16 3.00 0.99 3.88 0.00 3.01 16 8 C 0.49 10.88 7.08 71.23 0.50 11.39 16 9 O -0.54 -13.30 16.29 21.96 0.36 -12.94 16 10 O -0.48 -11.15 9.87 -43.79 -0.43 -11.58 16 11 C -0.15 -1.76 6.40 31.61 0.20 -1.56 16 12 C 0.04 0.50 7.63 72.49 0.55 1.05 16 13 O -0.38 -7.47 11.65 -148.98 -1.74 -9.21 16 14 C 0.06 1.18 6.45 72.49 0.47 1.65 16 15 C 0.08 2.40 11.50 85.65 0.99 3.39 16 16 N -0.34 -14.09 12.50 -56.27 -0.70 -14.79 16 17 N -0.34 -15.28 3.56 -336.71 -1.20 -16.48 16 18 C 0.27 13.68 5.78 85.63 0.49 14.18 16 19 C -0.56 -30.30 9.39 25.60 0.24 -30.06 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 21 C 0.02 1.29 5.46 84.66 0.46 1.75 16 22 N -0.92 -50.99 13.29 21.45 0.28 -50.71 16 23 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.50 7.71 -2.38 -0.02 2.48 16 29 H 0.10 3.46 6.50 -2.39 -0.02 3.45 16 30 H 0.42 5.90 7.10 -92.71 -0.66 5.24 16 31 H 0.42 6.19 9.10 -74.06 -0.67 5.52 16 32 H 0.11 1.39 6.74 -2.39 -0.02 1.38 16 33 H 0.12 0.85 7.53 -2.39 -0.02 0.83 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.10 2.52 6.48 -2.38 -0.02 2.51 16 37 H 0.07 1.47 7.86 -2.39 -0.02 1.45 16 38 H 0.23 4.28 7.50 -2.91 -0.02 4.26 16 39 H 0.05 2.52 7.64 -2.39 -0.02 2.51 16 40 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -71.26 346.52 1.71 -69.55 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.22 Total: 19.88 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 5.32 Total: 15.23 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -3.80 Total: -98.27 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -1.61 Total: -50.60 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.26 1.71 -69.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574296464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.561 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds