Wall clock time and date at job start Tue Mar 31 2020 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86796 * 120.00243 * 2 1 4 4 H 1.48507 * 109.46960 * 239.99755 * 3 2 1 5 5 H 1.48496 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47372 * 119.99846 * 3 2 1 7 7 C 1.38987 * 119.99334 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99738 * 180.02562 * 7 2 1 9 9 N 1.37324 * 120.00628 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.07167 * 180.27968 * 9 7 2 11 11 C 1.35676 * 107.50388 * 180.15656 * 10 9 7 12 12 N 1.40595 * 126.08125 * 179.84334 * 11 10 9 13 13 C 1.34777 * 120.00275 * 179.72046 * 12 11 10 14 14 O 1.21297 * 120.00184 * 0.27347 * 13 12 11 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 11 16 16 H 1.08995 * 110.99025 * 59.29989 * 15 13 12 17 17 C 1.54942 * 111.12709 * 295.09770 * 15 13 12 18 18 O 1.43689 * 105.11487 * 205.67810 * 17 15 13 19 19 C 1.43245 * 109.99210 * 24.36030 * 18 17 15 20 20 H 1.09005 * 109.82822 * 238.81381 * 19 18 17 21 21 C 1.52995 * 109.82924 * 117.84339 * 19 18 17 22 22 C 1.53000 * 109.47054 * 66.86673 * 21 19 18 23 23 C 1.50706 * 109.47157 * 180.02562 * 22 21 19 24 24 O 1.20826 * 119.99839 * 359.97438 * 23 22 21 25 25 O 1.34227 * 120.00137 * 180.02562 * 23 22 21 26 26 C 1.54384 * 107.58923 * 358.33034 * 19 18 17 27 27 C 1.40648 * 107.84234 * 359.58205 * 11 10 9 28 28 N 1.30914 * 108.38553 * 0.26076 * 27 11 10 29 29 H 0.97006 * 119.99813 * 0.02562 * 1 2 3 30 30 H 1.07991 * 126.24572 * 0.02562 * 10 9 7 31 31 H 0.96999 * 119.99681 * 359.71136 * 12 11 10 32 32 H 1.08999 * 110.30810 * 324.55774 * 17 15 13 33 33 H 1.09001 * 110.30628 * 86.72003 * 17 15 13 34 34 H 1.09003 * 109.47322 * 186.86268 * 21 19 18 35 35 H 1.09001 * 109.47524 * 306.86807 * 21 19 18 36 36 H 1.08995 * 109.47326 * 299.99889 * 22 21 19 37 37 H 1.09001 * 109.47517 * 60.00371 * 22 21 19 38 38 H 0.96698 * 117.00038 * 179.97438 * 25 23 22 39 39 H 1.08999 * 110.84796 * 220.45581 * 26 19 18 40 40 H 1.08997 * 111.01851 * 96.90853 * 26 19 18 41 41 H 1.07998 * 125.81379 * 180.23951 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6962 -1.2125 5 1 1.2821 2.7464 -0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0077 -1.2037 0.0005 8 1 3.0877 -1.2038 0.0010 9 7 1.3211 -2.3930 0.0005 10 6 1.8747 -3.6406 0.0064 11 6 0.8575 -4.5384 0.0006 12 7 0.9886 -5.9383 0.0006 13 6 -0.1106 -6.7181 0.0001 14 8 -1.2131 -6.2123 -0.0054 15 6 0.0301 -8.2186 -0.0005 16 1 0.5836 -8.5592 0.8745 17 6 0.6928 -8.7169 -1.3094 18 8 0.2296 -10.0671 -1.4734 19 6 -1.0137 -10.2454 -0.7849 20 1 -0.9142 -11.0355 -0.0405 21 6 -2.1135 -10.6078 -1.7849 22 6 -1.8288 -11.9892 -2.3777 23 6 -2.9117 -12.3459 -3.3632 24 8 -3.8184 -11.5745 -3.5699 25 8 -2.8695 -13.5210 -4.0107 26 6 -1.3574 -8.9107 -0.0893 27 6 -0.3516 -3.8198 0.0006 28 7 -0.0718 -2.5409 0.0006 29 1 -0.4850 0.8401 -0.0004 30 1 2.9297 -3.8710 0.0123 31 1 1.8703 -6.3427 0.0008 32 1 0.3745 -8.1031 -2.1521 33 1 1.7785 -8.6972 -1.2149 34 1 -3.0772 -10.6225 -1.2758 35 1 -2.1362 -9.8671 -2.5843 36 1 -0.8652 -11.9746 -2.8869 37 1 -1.8061 -12.7300 -1.5784 38 1 -3.5864 -13.7054 -4.6328 39 1 -1.7678 -9.0859 0.9051 40 1 -2.0470 -8.3212 -0.6935 41 1 -1.3422 -4.2498 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:53 Heat of formation + Delta-G solvation = -97.864235 kcal Electronic energy + Delta-G solvation = -26257.107350 eV Core-core repulsion = 22138.802950 eV Total energy + Delta-G solvation = -4118.304400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68656 -40.31155 -39.52524 -38.19641 -36.50462 -34.29379 -33.97211 -33.19268 -32.33439 -30.25916 -29.41355 -27.67502 -25.22257 -25.00224 -23.31766 -21.70094 -21.00003 -20.88780 -19.84061 -19.38404 -18.38919 -17.66305 -17.32000 -17.01801 -16.52652 -16.27641 -15.49755 -15.30001 -15.22878 -14.80416 -14.39058 -14.00892 -13.85348 -13.71219 -13.52032 -13.26296 -13.06699 -12.89900 -12.30466 -12.26298 -11.85898 -11.69525 -11.63763 -11.44811 -11.31608 -11.26291 -11.14651 -11.06178 -10.96447 -10.82404 -10.56898 -10.19128 -9.77144 -9.22802 -9.18091 -8.82235 -8.07868 -6.72990 -6.56882 -4.24456 1.91103 2.71839 2.75550 3.01255 3.03700 3.08067 3.37392 3.64197 3.69675 3.88148 4.19065 4.38506 4.43311 4.58240 4.70966 4.72470 4.80872 4.91620 5.00448 5.01403 5.12553 5.17715 5.34194 5.38600 5.49821 5.58293 5.65390 5.81950 5.89615 6.08729 6.19453 6.22246 6.43375 6.73431 6.87589 6.93310 7.08849 7.22142 7.57484 7.84078 8.13735 8.25853 8.60390 8.80938 9.36132 9.65242 10.39032 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.002014 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.482206 B =13897.863564 C =14220.049662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.062 4.062 12 N -0.621 5.621 13 C 0.508 3.492 14 O -0.531 6.531 15 C -0.142 4.142 16 H 0.110 0.890 17 C 0.064 3.936 18 O -0.376 6.376 19 C 0.081 3.919 20 H 0.086 0.914 21 C -0.121 4.121 22 C -0.110 4.110 23 C 0.476 3.524 24 O -0.515 6.515 25 O -0.521 6.521 26 C -0.130 4.130 27 C -0.033 4.033 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.145 0.855 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.409 0.591 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -22.695 -2.346 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.091 4.909 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.263 5.263 13 C 0.293 3.707 14 O -0.407 6.407 15 C -0.164 4.164 16 H 0.128 0.872 17 C -0.013 4.013 18 O -0.295 6.295 19 C 0.023 3.977 20 H 0.104 0.896 21 C -0.158 4.158 22 C -0.147 4.147 23 C 0.319 3.681 24 O -0.403 6.403 25 O -0.333 6.333 26 C -0.168 4.168 27 C -0.208 4.208 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.230 0.770 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.267 0.733 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.064 -20.836 -2.247 20.957 hybrid contribution 0.741 -0.324 -0.273 0.854 sum 0.805 -21.160 -2.520 21.325 Atomic orbital electron populations 1.70209 1.06132 1.28124 1.35152 1.25648 0.95717 1.00291 0.95491 0.85891 0.79142 0.79619 0.79470 1.19153 1.20128 1.19155 1.19825 0.91635 0.80567 1.53561 0.86654 1.44551 1.04053 1.03309 1.39030 1.21256 0.96826 0.85385 1.19996 1.17273 0.94305 0.81251 1.23962 1.42518 1.08118 1.04615 1.71088 1.19862 0.84636 0.87617 0.78592 1.90611 1.25822 1.74600 1.49713 1.22973 0.99076 0.93622 1.00756 0.87219 1.23343 0.99310 0.83196 0.95451 1.88409 1.37546 1.28822 1.74728 1.22794 0.83987 0.97853 0.93034 0.89649 1.21869 0.98887 0.95197 0.99871 1.21358 0.97014 0.99251 0.97080 1.23709 0.86397 0.78209 0.79815 1.90752 1.36079 1.50292 1.63184 1.84546 1.54022 1.38979 1.55725 1.23030 0.96521 0.94451 1.02773 1.24106 0.98013 0.90757 1.07946 1.78267 0.90108 1.15083 1.25725 0.91384 0.83708 0.77043 0.91362 0.88902 0.89731 0.90094 0.86873 0.87671 0.73259 0.89368 0.88484 0.80780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.53 11.81 55.49 0.66 -20.87 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.85 29.55 -169.99 -5.02 13.83 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.32 -8.52 10.25 -14.81 -0.15 -8.67 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 9 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 12 N -0.62 -10.45 5.46 -10.00 -0.05 -10.50 16 13 C 0.51 8.28 7.12 -10.98 -0.08 8.20 16 14 O -0.53 -10.91 12.89 5.54 0.07 -10.84 16 15 C -0.14 -1.57 3.48 -89.52 -0.31 -1.88 16 16 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 17 C 0.06 0.64 7.25 38.18 0.28 0.92 16 18 O -0.38 -3.77 10.65 -35.23 -0.38 -4.14 16 19 C 0.08 0.70 3.51 -26.01 -0.09 0.61 16 20 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.12 -1.05 4.08 -26.73 -0.11 -1.16 16 22 C -0.11 -0.78 5.72 -27.88 -0.16 -0.94 16 23 C 0.48 4.22 8.33 36.01 0.30 4.52 16 24 O -0.52 -6.44 16.74 -18.75 -0.31 -6.76 16 25 O -0.52 -3.43 13.42 -39.25 -0.53 -3.96 16 26 C -0.13 -1.36 5.68 -24.78 -0.14 -1.50 16 27 C -0.03 -0.86 10.85 -17.03 -0.18 -1.04 16 28 N -0.26 -7.58 10.40 30.80 0.32 -7.26 16 29 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 31 H 0.40 5.00 8.83 -40.82 -0.36 4.64 16 32 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.11 0.78 7.89 -51.93 -0.41 0.37 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.41 1.12 9.10 45.56 0.41 1.53 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.24 7.12 -51.93 -0.37 0.87 16 41 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -36.37 354.13 -5.84 -42.21 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.38 Total: 10.87 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.51 Total: -4.00 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.88 Total: -42.55 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.14 Total: -25.70 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.37 -5.84 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.656 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds