Wall clock time and date at job start Tue Mar 31 2020 13:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86793 * 120.00170 * 2 1 4 4 H 1.48501 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47334 * 300.00358 * 3 2 1 6 6 H 1.48507 * 109.47130 * 60.00053 * 3 2 1 7 7 C 1.38984 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00466 * 179.97438 * 7 2 1 9 9 N 1.37327 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.36491 * 126.06931 * 179.97438 * 9 7 2 11 11 C 1.35677 * 107.51072 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.08412 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00081 * 180.02562 * 12 11 10 14 14 O 1.21306 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00076 * 179.97438 * 13 12 11 16 16 H 1.08995 * 110.74895 * 297.97717 * 15 13 12 17 17 C 1.54381 * 110.84779 * 61.45083 * 15 13 12 18 18 O 1.43236 * 107.58821 * 139.54243 * 17 15 13 19 19 C 1.43645 * 109.97426 * 1.71822 * 18 17 15 20 20 H 1.09001 * 110.31238 * 94.57519 * 19 18 17 21 21 C 1.52997 * 110.31280 * 216.65301 * 19 18 17 22 22 C 1.52996 * 109.46880 * 293.54296 * 21 19 18 23 23 C 1.50706 * 109.47215 * 179.97438 * 22 21 19 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 22 21 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 22 21 26 26 C 1.54955 * 105.13327 * 335.56718 * 19 18 17 27 27 C 1.40648 * 107.83352 * 0.26381 * 11 10 9 28 28 N 1.30906 * 108.38917 * 359.55250 * 27 11 10 29 29 H 0.96999 * 119.99570 * 359.97438 * 1 2 3 30 30 H 1.08004 * 126.24224 * 0.02562 * 10 9 7 31 31 H 0.96996 * 120.00249 * 359.97438 * 12 11 10 32 32 H 1.09008 * 109.83023 * 20.03674 * 17 15 13 33 33 H 1.08991 * 109.83254 * 259.06478 * 17 15 13 34 34 H 1.08997 * 109.47186 * 173.54319 * 21 19 18 35 35 H 1.09003 * 109.47116 * 53.53826 * 21 19 18 36 36 H 1.08997 * 109.47192 * 60.00026 * 22 21 19 37 37 H 1.09000 * 109.47459 * 300.00106 * 22 21 19 38 38 H 0.96700 * 117.00196 * 179.97438 * 25 23 22 39 39 H 1.08999 * 111.12325 * 154.36158 * 26 19 18 40 40 H 1.08999 * 111.12105 * 278.52771 * 26 19 18 41 41 H 1.08004 * 125.80565 * 179.70500 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 3.7070 1.3463 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8883 2.3964 1.2126 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0015 11 6 0.8578 -4.5385 -0.0017 12 7 0.9890 -5.9383 -0.0021 13 6 -0.1102 -6.7182 -0.0028 14 8 -1.2128 -6.2123 -0.0026 15 6 0.0305 -8.2186 -0.0038 16 1 0.5427 -8.5578 -0.9042 17 6 0.7681 -8.7022 1.2632 18 8 0.1147 -9.8936 1.7163 19 6 -0.9558 -10.2365 0.8220 20 1 -0.6120 -10.9554 0.0782 21 6 -2.1393 -10.8085 1.6049 22 6 -1.7403 -12.1491 2.2249 23 6 -2.9058 -12.7124 2.9967 24 8 -3.9484 -12.1037 3.0461 25 8 -2.7854 -13.8897 3.6300 26 6 -1.3558 -8.9038 0.1401 27 6 -0.3512 -3.8198 -0.0070 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4849 0.8401 0.0004 30 1 2.9301 -3.8708 -0.0021 31 1 1.8706 -6.3428 -0.0027 32 1 0.7166 -7.9355 2.0364 33 1 1.8093 -8.9191 1.0248 34 1 -2.9832 -10.9566 0.9311 35 1 -2.4227 -10.1129 2.3948 36 1 -0.8965 -12.0010 2.8987 37 1 -1.4569 -12.8448 1.4351 38 1 -3.5600 -14.2100 4.1122 39 1 -1.8090 -9.0820 -0.8351 40 1 -2.0185 -8.3194 0.7784 41 1 -1.3419 -4.2500 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:56 Heat of formation + Delta-G solvation = -97.598429 kcal Electronic energy + Delta-G solvation = -26201.239326 eV Core-core repulsion = 22082.946452 eV Total energy + Delta-G solvation = -4118.292874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68214 -40.32971 -39.51280 -38.17769 -36.52353 -34.30428 -34.03611 -33.20006 -32.33714 -30.25930 -29.42857 -27.67036 -25.21045 -24.97133 -23.27303 -21.75937 -21.06470 -20.91173 -19.83368 -19.36942 -18.40663 -17.57758 -17.36794 -17.00986 -16.50640 -16.26912 -15.52403 -15.45364 -15.21147 -14.67097 -14.61141 -13.96402 -13.80308 -13.72183 -13.41119 -13.37875 -13.09926 -12.92245 -12.21137 -12.17088 -11.87885 -11.72165 -11.66891 -11.44974 -11.36840 -11.29568 -11.14991 -11.10820 -10.94505 -10.84240 -10.51939 -10.19936 -9.77176 -9.20775 -9.18907 -8.82297 -8.07850 -6.73021 -6.57249 -4.24605 1.89509 2.70344 2.75265 2.99725 3.04021 3.10177 3.40151 3.61394 3.66364 3.86267 4.17703 4.38085 4.39926 4.59904 4.69716 4.71949 4.82673 4.89227 4.99722 5.01009 5.08642 5.18673 5.31701 5.37370 5.51325 5.56624 5.66178 5.80331 5.88302 6.08760 6.18031 6.22084 6.43379 6.74810 6.87708 6.93580 7.08753 7.22029 7.55919 7.84343 8.13628 8.25771 8.60319 8.80846 9.36151 9.65266 10.38822 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.001964 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.831240 B =14255.976829 C =14538.946506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.143 5.143 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.622 5.622 13 C 0.507 3.493 14 O -0.530 6.530 15 C -0.142 4.142 16 H 0.109 0.891 17 C 0.063 3.937 18 O -0.377 6.377 19 C 0.080 3.920 20 H 0.076 0.924 21 C -0.109 4.109 22 C -0.111 4.111 23 C 0.477 3.523 24 O -0.516 6.516 25 O -0.520 6.520 26 C -0.128 4.128 27 C -0.033 4.033 28 N -0.260 5.260 29 H 0.274 0.726 30 H 0.145 0.855 31 H 0.397 0.603 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.409 0.591 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -23.092 1.968 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.264 5.264 13 C 0.292 3.708 14 O -0.407 6.407 15 C -0.164 4.164 16 H 0.127 0.873 17 C -0.014 4.014 18 O -0.297 6.297 19 C 0.023 3.977 20 H 0.094 0.906 21 C -0.146 4.146 22 C -0.148 4.148 23 C 0.319 3.681 24 O -0.403 6.403 25 O -0.332 6.332 26 C -0.166 4.166 27 C -0.208 4.208 28 N -0.092 5.092 29 H 0.085 0.915 30 H 0.163 0.837 31 H 0.229 0.771 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.268 0.732 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.439 -21.174 1.954 21.268 hybrid contribution 0.806 -0.449 0.079 0.926 sum 1.245 -21.623 2.033 21.754 Atomic orbital electron populations 1.70231 1.06132 1.27900 1.35346 1.25652 0.95718 1.00304 0.95494 0.85760 0.79617 0.80250 0.78490 1.18685 1.19910 1.19902 1.19923 0.91677 0.80536 1.53398 0.86556 1.44565 1.04047 1.03325 1.39074 1.21259 0.96822 0.85391 1.19955 1.17275 0.94310 0.81252 1.23943 1.42522 1.08112 1.04621 1.71146 1.19900 0.84647 0.87649 0.78556 1.90614 1.25817 1.74570 1.49677 1.22851 0.98979 0.93870 1.00693 0.87307 1.23093 0.96029 0.87456 0.94808 1.88390 1.47462 1.43251 1.50551 1.23029 0.87126 0.96431 0.91161 0.90599 1.21611 0.97100 0.94911 1.00986 1.21365 0.95320 0.97827 1.00303 1.23683 0.89732 0.78054 0.76584 1.90749 1.30735 1.59542 1.59323 1.84545 1.47081 1.37939 1.63677 1.23162 0.96076 0.94536 1.02837 1.24106 0.98018 0.90754 1.07934 1.78261 0.90132 1.15084 1.25680 0.91493 0.83708 0.77057 0.90496 0.90525 0.89479 0.89812 0.86806 0.87645 0.73235 0.89253 0.88454 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.54 11.81 55.49 0.66 -20.88 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 3 Si 0.93 18.88 29.55 -169.99 -5.02 13.86 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.32 -8.52 10.25 -14.81 -0.15 -8.67 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 10 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 12 N -0.62 -10.48 5.41 -10.00 -0.05 -10.54 16 13 C 0.51 8.31 6.99 -10.98 -0.08 8.23 16 14 O -0.53 -10.95 12.92 5.53 0.07 -10.88 16 15 C -0.14 -1.56 3.39 -89.82 -0.30 -1.87 16 16 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 17 C 0.06 0.64 7.35 37.88 0.28 0.91 16 18 O -0.38 -3.93 10.69 -35.23 -0.38 -4.31 16 19 C 0.08 0.69 3.43 -25.70 -0.09 0.60 16 20 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 21 C -0.11 -0.92 4.25 -26.73 -0.11 -1.04 16 22 C -0.11 -0.76 5.73 -27.88 -0.16 -0.92 16 23 C 0.48 4.10 8.33 36.01 0.30 4.40 16 24 O -0.52 -6.26 16.74 -18.75 -0.31 -6.57 16 25 O -0.52 -3.32 13.42 -39.24 -0.53 -3.85 16 26 C -0.13 -1.36 5.65 -24.48 -0.14 -1.50 16 27 C -0.03 -0.86 10.85 -17.04 -0.18 -1.04 16 28 N -0.26 -7.58 10.40 30.80 0.32 -7.26 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 31 H 0.40 5.01 8.82 -40.82 -0.36 4.65 16 32 H 0.08 0.89 7.81 -51.92 -0.41 0.49 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.11 0.77 7.91 -51.93 -0.41 0.36 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.41 1.03 9.10 45.56 0.41 1.44 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.27 7.38 -51.93 -0.38 0.89 16 41 H 0.18 4.55 5.92 -52.48 -0.31 4.23 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -36.53 354.14 -5.83 -42.36 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.38 Total: 10.60 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.93 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.88 Total: -42.62 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.15 Total: -25.61 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.53 -5.83 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.236 kcal (2) G-P(sol) polarization free energy of solvation -36.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds