Wall clock time and date at job start Tue Mar 31 2020 13:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31303 * 1 3 3 Si 1.86793 * 120.00170 * 2 1 4 4 H 1.48501 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47334 * 300.00358 * 3 2 1 6 6 H 1.48507 * 109.47130 * 60.00053 * 3 2 1 7 7 C 1.38984 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00466 * 179.97438 * 7 2 1 9 9 N 1.37327 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.36491 * 126.06931 * 179.97438 * 9 7 2 11 11 C 1.35677 * 107.51072 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.08412 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00081 * 180.02562 * 12 11 10 14 14 O 1.21306 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00076 * 179.97438 * 13 12 11 16 16 H 1.08995 * 110.74895 * 297.97717 * 15 13 12 17 17 C 1.54381 * 110.84779 * 61.45083 * 15 13 12 18 18 O 1.43236 * 107.58821 * 139.54243 * 17 15 13 19 19 C 1.43645 * 109.97426 * 1.71822 * 18 17 15 20 20 H 1.09001 * 110.31238 * 94.57519 * 19 18 17 21 21 C 1.52997 * 110.31280 * 216.65301 * 19 18 17 22 22 C 1.52996 * 109.46880 * 293.54296 * 21 19 18 23 23 C 1.50706 * 109.47215 * 179.97438 * 22 21 19 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 22 21 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 22 21 26 26 C 1.54955 * 105.13327 * 335.56718 * 19 18 17 27 27 C 1.40648 * 107.83352 * 0.26381 * 11 10 9 28 28 N 1.30906 * 108.38917 * 359.55250 * 27 11 10 29 29 H 0.96999 * 119.99570 * 359.97438 * 1 2 3 30 30 H 1.08004 * 126.24224 * 0.02562 * 10 9 7 31 31 H 0.96996 * 120.00249 * 359.97438 * 12 11 10 32 32 H 1.09008 * 109.83023 * 20.03674 * 17 15 13 33 33 H 1.08991 * 109.83254 * 259.06478 * 17 15 13 34 34 H 1.08997 * 109.47186 * 173.54319 * 21 19 18 35 35 H 1.09003 * 109.47116 * 53.53826 * 21 19 18 36 36 H 1.08997 * 109.47192 * 60.00026 * 22 21 19 37 37 H 1.09000 * 109.47459 * 300.00106 * 22 21 19 38 38 H 0.96700 * 117.00196 * 179.97438 * 25 23 22 39 39 H 1.08999 * 111.12325 * 154.36158 * 26 19 18 40 40 H 1.08999 * 111.12105 * 278.52771 * 26 19 18 41 41 H 1.08004 * 125.80565 * 179.70500 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 3.7070 1.3463 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8883 2.3964 1.2126 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2038 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0015 11 6 0.8578 -4.5385 -0.0017 12 7 0.9890 -5.9383 -0.0021 13 6 -0.1102 -6.7182 -0.0028 14 8 -1.2128 -6.2123 -0.0026 15 6 0.0305 -8.2186 -0.0038 16 1 0.5427 -8.5578 -0.9042 17 6 0.7681 -8.7022 1.2632 18 8 0.1147 -9.8936 1.7163 19 6 -0.9558 -10.2365 0.8220 20 1 -0.6120 -10.9554 0.0782 21 6 -2.1393 -10.8085 1.6049 22 6 -1.7403 -12.1491 2.2249 23 6 -2.9058 -12.7124 2.9967 24 8 -3.9484 -12.1037 3.0461 25 8 -2.7854 -13.8897 3.6300 26 6 -1.3558 -8.9038 0.1401 27 6 -0.3512 -3.8198 -0.0070 28 7 -0.0716 -2.5410 -0.0001 29 1 -0.4849 0.8401 0.0004 30 1 2.9301 -3.8708 -0.0021 31 1 1.8706 -6.3428 -0.0027 32 1 0.7166 -7.9355 2.0364 33 1 1.8093 -8.9191 1.0248 34 1 -2.9832 -10.9566 0.9311 35 1 -2.4227 -10.1129 2.3948 36 1 -0.8965 -12.0010 2.8987 37 1 -1.4569 -12.8448 1.4351 38 1 -3.5600 -14.2100 4.1122 39 1 -1.8090 -9.0820 -0.8351 40 1 -2.0185 -8.3194 0.7784 41 1 -1.3419 -4.2500 -0.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:55 Heat of formation + Delta-G solvation = -125.917099 kcal Electronic energy + Delta-G solvation = -26202.467315 eV Core-core repulsion = 22082.946452 eV Total energy + Delta-G solvation = -4119.520863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.85043 -41.29217 -40.89962 -39.46617 -37.15189 -35.95198 -35.04427 -34.66964 -33.32219 -32.20259 -30.34335 -29.31763 -26.87421 -25.87958 -24.45894 -22.86115 -22.43727 -21.78298 -21.34655 -20.87937 -19.29532 -19.03765 -18.26210 -17.95229 -17.45796 -17.30497 -17.03340 -16.83454 -16.32452 -15.93819 -15.79251 -15.37724 -15.14785 -14.86935 -14.58250 -14.40472 -14.33705 -14.09706 -13.50919 -13.30779 -13.08152 -12.93292 -12.87498 -12.84797 -12.55387 -12.44259 -12.10640 -12.02799 -11.94989 -11.88543 -11.82212 -11.56412 -11.03096 -10.85400 -10.72842 -10.38765 -10.10786 -8.53053 -8.47404 -6.24720 1.20428 1.24622 1.39774 1.50433 1.58902 1.86047 2.03025 2.17802 2.29470 2.50774 2.77315 2.94302 3.08905 3.31824 3.70151 3.84759 3.95779 4.10018 4.11058 4.27161 4.30913 4.43761 4.49286 4.60791 4.64074 4.76736 4.78506 4.83050 4.93500 5.00449 5.06252 5.09898 5.14734 5.29254 5.30681 5.47942 5.66173 5.96156 6.01637 6.31414 6.73789 6.75280 7.01776 7.39206 7.47498 7.68415 8.52310 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.001964 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.831240 B =14255.976829 C =14538.946506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.169 5.169 10 C -0.078 4.078 11 C -0.045 4.045 12 N -0.613 5.613 13 C 0.505 3.495 14 O -0.577 6.577 15 C -0.128 4.128 16 H 0.150 0.850 17 C 0.066 3.934 18 O -0.387 6.387 19 C 0.089 3.911 20 H 0.114 0.886 21 C -0.109 4.109 22 C -0.105 4.105 23 C 0.480 3.520 24 O -0.561 6.561 25 O -0.515 6.515 26 C -0.135 4.135 27 C -0.062 4.062 28 N -0.312 5.312 29 H 0.276 0.724 30 H 0.190 0.810 31 H 0.421 0.579 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.425 0.575 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -25.504 1.337 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.161 1.161 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.061 4.939 10 C -0.229 4.229 11 C -0.151 4.151 12 N -0.258 5.258 13 C 0.292 3.708 14 O -0.457 6.457 15 C -0.149 4.149 16 H 0.168 0.832 17 C -0.011 4.011 18 O -0.307 6.307 19 C 0.032 3.968 20 H 0.132 0.868 21 C -0.146 4.146 22 C -0.142 4.142 23 C 0.325 3.675 24 O -0.452 6.452 25 O -0.328 6.328 26 C -0.173 4.173 27 C -0.237 4.237 28 N -0.144 5.144 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.259 0.741 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.287 0.713 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.812 -23.675 1.337 24.017 hybrid contribution -0.293 0.085 0.318 0.441 sum 3.518 -23.590 1.655 23.908 Atomic orbital electron populations 1.70417 1.08481 1.28985 1.37600 1.26904 0.96477 1.04434 0.94191 0.84529 0.79131 0.74367 0.78125 1.16139 1.19830 1.19915 1.20670 0.92985 0.80858 1.53890 0.84009 1.44858 1.03573 1.04912 1.40515 1.22033 0.98889 0.84117 1.17834 1.17354 0.92635 0.84011 1.21141 1.42486 1.09908 1.02202 1.71209 1.20980 0.83545 0.89954 0.76279 1.90609 1.27821 1.76027 1.51207 1.22884 0.99902 0.88979 1.03142 0.83217 1.23131 0.97662 0.86972 0.93314 1.88385 1.47813 1.43032 1.51464 1.23118 0.86635 0.95749 0.91275 0.86845 1.21561 0.97426 0.95370 1.00277 1.21386 0.94480 0.97316 1.01037 1.24022 0.89442 0.78006 0.76022 1.90742 1.32569 1.60829 1.61064 1.84510 1.48079 1.36867 1.63367 1.23199 0.95522 0.95395 1.03162 1.24147 0.99064 0.91004 1.09480 1.78152 0.92171 1.16648 1.27465 0.91473 0.79279 0.74137 0.92833 0.86838 0.89346 0.92884 0.86288 0.84461 0.71343 0.87870 0.92056 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.27 11.81 21.66 0.26 -48.01 16 2 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 3 Si 1.02 38.70 29.55 68.60 2.03 40.73 16 4 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.35 -18.66 10.25 84.01 0.86 -17.80 16 8 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 9 N -0.17 -9.41 3.74 -190.01 -0.71 -10.12 16 10 C -0.08 -3.56 11.49 83.37 0.96 -2.60 16 11 C -0.05 -2.04 6.90 37.73 0.26 -1.78 16 12 N -0.61 -19.63 5.41 -303.92 -1.65 -21.28 16 13 C 0.50 16.12 6.99 87.66 0.61 16.74 16 14 O -0.58 -24.70 12.92 -3.11 -0.04 -24.74 16 15 C -0.13 -2.46 3.39 -10.28 -0.03 -2.49 16 16 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.07 1.13 7.35 72.45 0.53 1.66 16 18 O -0.39 -6.95 10.69 -148.98 -1.59 -8.54 16 19 C 0.09 1.29 3.43 31.26 0.11 1.40 16 20 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 21 C -0.11 -1.74 4.25 30.59 0.13 -1.61 16 22 C -0.11 -1.21 5.73 29.85 0.17 -1.04 16 23 C 0.48 7.71 8.33 71.24 0.59 8.30 16 24 O -0.56 -13.76 16.74 21.97 0.37 -13.39 16 25 O -0.51 -5.62 13.42 -51.35 -0.69 -6.31 16 26 C -0.13 -2.68 5.65 32.05 0.18 -2.50 16 27 C -0.06 -3.39 10.85 85.42 0.93 -2.46 16 28 N -0.31 -19.03 10.40 -56.47 -0.59 -19.61 16 29 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.19 6.61 8.06 -2.91 -0.02 6.59 16 31 H 0.42 9.19 8.82 -92.71 -0.82 8.37 16 32 H 0.05 1.17 7.81 -2.38 -0.02 1.15 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.12 1.31 7.91 -2.39 -0.02 1.29 16 37 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.43 1.50 9.10 -74.06 -0.67 0.83 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.68 7.38 -2.39 -0.02 1.66 16 41 H 0.16 9.15 5.92 -2.91 -0.02 9.13 16 Total: -1.00 -86.41 354.14 2.76 -83.65 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.40 Total: 31.80 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.77 Total: -4.17 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -2.69 Total: -99.02 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -1.95 Total: -52.98 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -86.41 2.76 -83.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.264 kcal (2) G-P(sol) polarization free energy of solvation -86.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds