Wall clock time and date at job start Tue Mar 31 2020 13:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36495 * 126.06857 * 179.43939 * 9 7 2 11 11 C 1.35679 * 107.50690 * 179.83608 * 10 9 7 12 12 N 1.40597 * 126.07934 * 180.15421 * 11 10 9 13 13 C 1.34769 * 119.99934 * 180.29150 * 12 11 10 14 14 O 1.21312 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00335 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.45724 * 298.85276 * 15 13 12 17 17 C 1.54483 * 110.50763 * 61.45010 * 15 13 12 18 18 O 1.44426 * 104.80105 * 142.62782 * 17 15 13 19 19 C 1.44427 * 105.27747 * 319.48560 * 18 17 15 20 20 H 1.08997 * 110.37189 * 281.68799 * 19 18 17 21 21 C 1.52990 * 110.37496 * 159.34109 * 19 18 17 22 22 C 1.52997 * 109.47193 * 66.45873 * 21 19 18 23 23 C 1.50703 * 109.47449 * 180.02562 * 22 21 19 24 24 O 1.20820 * 119.99814 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99898 * 179.97438 * 23 22 21 26 26 C 1.54485 * 104.79767 * 40.50983 * 19 18 17 27 27 C 1.40648 * 107.83780 * 0.42739 * 11 10 9 28 28 N 1.30907 * 108.38661 * 359.73238 * 27 11 10 29 29 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.07997 * 126.24337 * 359.96157 * 10 9 7 31 31 H 0.97002 * 119.99719 * 0.29269 * 12 11 10 32 32 H 1.08997 * 110.37191 * 261.45584 * 17 15 13 33 33 H 1.08997 * 110.37749 * 23.68720 * 17 15 13 34 34 H 1.08999 * 109.47565 * 186.45839 * 21 19 18 35 35 H 1.08999 * 109.47529 * 306.46005 * 21 19 18 36 36 H 1.09001 * 109.47080 * 299.99926 * 22 21 19 37 37 H 1.09000 * 109.47504 * 59.99798 * 22 21 19 38 38 H 0.96702 * 116.99916 * 179.97438 * 25 23 22 39 39 H 1.09000 * 110.51481 * 217.37494 * 26 19 18 40 40 H 1.09000 * 110.50814 * 94.67216 * 26 19 18 41 41 H 1.07999 * 125.80708 * 179.70391 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8749 -3.6404 -0.0189 11 6 0.8578 -4.5384 -0.0178 12 7 0.9891 -5.9382 -0.0248 13 6 -0.1100 -6.7181 -0.0287 14 8 -1.2126 -6.2123 -0.0256 15 6 0.0306 -8.2185 -0.0357 16 1 0.5570 -8.5476 -0.9316 17 6 0.7694 -8.6988 1.2332 18 8 0.1166 -9.9354 1.5944 19 6 -1.2915 -9.7008 1.3746 20 1 -1.7125 -9.1219 2.1966 21 6 -2.0352 -11.0289 1.2209 22 6 -1.9973 -11.7910 2.5470 23 6 -2.7294 -13.0996 2.3954 24 8 -3.2303 -13.3923 1.3357 25 8 -2.8248 -13.9398 3.4378 26 6 -1.3562 -8.8927 0.0595 27 6 -0.3513 -3.8198 -0.0146 28 7 -0.0716 -2.5410 -0.0081 29 1 -0.4850 0.8400 0.0004 30 1 2.9301 -3.8707 -0.0258 31 1 1.8708 -6.3426 -0.0269 32 1 1.8226 -8.8754 1.0151 33 1 0.6660 -7.9655 2.0330 34 1 -3.0711 -10.8352 0.9426 35 1 -1.5561 -11.6259 0.4449 36 1 -0.9614 -11.9848 2.8252 37 1 -2.4764 -11.1941 3.3230 38 1 -3.3042 -14.7670 3.2925 39 1 -2.1437 -8.1409 0.1115 40 1 -1.5169 -9.5572 -0.7894 41 1 -1.3419 -4.2499 -0.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:59 Heat of formation + Delta-G solvation = -97.302334 kcal Electronic energy + Delta-G solvation = -26218.302890 eV Core-core repulsion = 22100.022856 eV Total energy + Delta-G solvation = -4118.280034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69816 -40.35235 -39.50119 -38.14327 -36.53995 -34.32376 -34.02566 -33.20159 -32.25895 -30.26382 -29.36932 -27.66600 -25.19867 -24.96019 -23.26845 -21.85569 -20.96859 -20.93018 -19.84197 -19.42118 -18.42641 -17.74259 -17.12540 -16.85845 -16.61089 -15.88150 -15.74049 -15.49939 -15.19568 -14.99344 -14.57829 -14.06600 -13.74548 -13.66321 -13.54688 -13.12337 -13.02174 -12.92551 -12.28994 -12.06505 -11.89673 -11.71717 -11.64241 -11.46790 -11.33175 -11.26834 -11.20066 -10.95828 -10.87831 -10.84833 -10.55081 -10.20968 -9.97602 -9.21613 -9.19585 -8.83223 -8.08859 -6.73902 -6.57971 -4.25407 1.87568 2.69376 2.75729 3.00017 3.03289 3.08619 3.43565 3.63953 3.71561 3.87643 4.29541 4.36375 4.40242 4.63151 4.68348 4.71459 4.80190 4.94222 5.00023 5.06924 5.15170 5.18837 5.36689 5.37734 5.51089 5.57420 5.70337 5.79706 5.92793 6.01615 6.15995 6.21446 6.42412 6.59761 6.87032 6.92540 7.08266 7.21280 7.54141 7.83305 8.13075 8.25061 8.59585 8.80250 9.35217 9.64316 10.38025 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.043182 B = 0.001929 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.262474 B =14509.707071 C =14681.872434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.062 4.062 12 N -0.621 5.621 13 C 0.504 3.496 14 O -0.532 6.532 15 C -0.140 4.140 16 H 0.107 0.893 17 C 0.057 3.943 18 O -0.370 6.370 19 C 0.074 3.926 20 H 0.076 0.924 21 C -0.101 4.101 22 C -0.113 4.113 23 C 0.479 3.521 24 O -0.518 6.518 25 O -0.519 6.519 26 C -0.139 4.139 27 C -0.033 4.033 28 N -0.261 5.261 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.397 0.603 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.409 0.591 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -21.048 4.406 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.235 4.235 11 C -0.168 4.168 12 N -0.263 5.263 13 C 0.290 3.710 14 O -0.409 6.409 15 C -0.162 4.162 16 H 0.125 0.875 17 C -0.020 4.020 18 O -0.289 6.289 19 C 0.016 3.984 20 H 0.094 0.906 21 C -0.139 4.139 22 C -0.151 4.151 23 C 0.321 3.679 24 O -0.406 6.406 25 O -0.331 6.331 26 C -0.177 4.177 27 C -0.208 4.208 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.268 0.732 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.658 -19.239 4.271 19.719 hybrid contribution 0.977 -0.725 -0.245 1.241 sum 0.319 -19.965 4.026 20.369 Atomic orbital electron populations 1.70213 1.06135 1.28017 1.35256 1.25648 0.95711 1.00289 0.95479 0.85827 0.79393 0.79945 0.78981 1.19584 1.20070 1.18798 1.19876 0.91662 0.80555 1.53478 0.86604 1.44555 1.04045 1.03318 1.39048 1.21262 0.96835 0.85394 1.19968 1.17281 0.94306 0.81272 1.23936 1.42503 1.08118 1.04601 1.71091 1.20037 0.84587 0.88066 0.78332 1.90582 1.25824 1.74490 1.50013 1.22631 0.99053 0.93247 1.01293 0.87454 1.23368 0.97422 0.86703 0.94522 1.89093 1.18312 1.33616 1.87895 1.23067 0.82636 0.95346 0.97309 0.90601 1.21514 1.01603 0.94602 0.96167 1.21389 1.02337 0.90154 1.01173 1.23670 0.77233 0.86086 0.80868 1.90733 1.45227 1.75883 1.28756 1.84556 1.72399 1.33578 1.42605 1.22961 0.97183 0.99832 0.97734 1.24101 0.98004 0.90752 1.07975 1.78260 0.90129 1.15086 1.25710 0.91438 0.83713 0.77038 0.88295 0.91390 0.89385 0.89937 0.86812 0.87476 0.73247 0.87614 0.90061 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.40 11.81 55.50 0.66 -20.74 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.93 18.75 29.55 -169.99 -5.02 13.73 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.32 -8.48 10.25 -14.81 -0.15 -8.63 16 8 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.86 3.74 -11.41 -0.04 -3.90 16 10 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -10.37 5.41 -10.00 -0.05 -10.42 16 13 C 0.50 8.16 7.01 -10.99 -0.08 8.08 16 14 O -0.53 -10.75 12.44 5.53 0.07 -10.68 16 15 C -0.14 -1.58 3.51 -90.20 -0.32 -1.89 16 16 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 17 C 0.06 0.56 7.11 37.94 0.27 0.83 16 18 O -0.37 -3.85 11.00 -35.23 -0.39 -4.24 16 19 C 0.07 0.71 3.27 -25.96 -0.09 0.62 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 21 C -0.10 -0.85 4.14 -26.74 -0.11 -0.96 16 22 C -0.11 -0.81 5.73 -27.88 -0.16 -0.97 16 23 C 0.48 4.03 8.33 36.01 0.30 4.33 16 24 O -0.52 -6.01 16.74 -18.74 -0.31 -6.33 16 25 O -0.52 -3.29 13.42 -39.25 -0.53 -3.82 16 26 C -0.14 -1.52 6.21 -25.16 -0.16 -1.67 16 27 C -0.03 -0.85 10.85 -17.04 -0.18 -1.04 16 28 N -0.26 -7.52 10.40 30.80 0.32 -7.20 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 31 H 0.40 4.97 8.81 -40.82 -0.36 4.61 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 34 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.11 0.77 7.91 -51.93 -0.41 0.36 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.41 0.96 9.10 45.56 0.41 1.37 16 39 H 0.11 1.37 6.51 -51.93 -0.34 1.03 16 40 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 41 H 0.18 4.48 5.92 -52.49 -0.31 4.17 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -35.86 353.08 -5.84 -41.70 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.32 Total: 10.88 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.54 Total: -4.30 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.88 Total: -42.27 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.16 Total: -25.06 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.86 -5.84 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.600 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds