Wall clock time and date at job start Tue Mar 31 2020 13:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36495 * 126.06857 * 179.43939 * 9 7 2 11 11 C 1.35679 * 107.50690 * 179.83608 * 10 9 7 12 12 N 1.40597 * 126.07934 * 180.15421 * 11 10 9 13 13 C 1.34769 * 119.99934 * 180.29150 * 12 11 10 14 14 O 1.21312 * 120.00056 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00335 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.45724 * 298.85276 * 15 13 12 17 17 C 1.54483 * 110.50763 * 61.45010 * 15 13 12 18 18 O 1.44426 * 104.80105 * 142.62782 * 17 15 13 19 19 C 1.44427 * 105.27747 * 319.48560 * 18 17 15 20 20 H 1.08997 * 110.37189 * 281.68799 * 19 18 17 21 21 C 1.52990 * 110.37496 * 159.34109 * 19 18 17 22 22 C 1.52997 * 109.47193 * 66.45873 * 21 19 18 23 23 C 1.50703 * 109.47449 * 180.02562 * 22 21 19 24 24 O 1.20820 * 119.99814 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99898 * 179.97438 * 23 22 21 26 26 C 1.54485 * 104.79767 * 40.50983 * 19 18 17 27 27 C 1.40648 * 107.83780 * 0.42739 * 11 10 9 28 28 N 1.30907 * 108.38661 * 359.73238 * 27 11 10 29 29 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.07997 * 126.24337 * 359.96157 * 10 9 7 31 31 H 0.97002 * 119.99719 * 0.29269 * 12 11 10 32 32 H 1.08997 * 110.37191 * 261.45584 * 17 15 13 33 33 H 1.08997 * 110.37749 * 23.68720 * 17 15 13 34 34 H 1.08999 * 109.47565 * 186.45839 * 21 19 18 35 35 H 1.08999 * 109.47529 * 306.46005 * 21 19 18 36 36 H 1.09001 * 109.47080 * 299.99926 * 22 21 19 37 37 H 1.09000 * 109.47504 * 59.99798 * 22 21 19 38 38 H 0.96702 * 116.99916 * 179.97438 * 25 23 22 39 39 H 1.09000 * 110.51481 * 217.37494 * 26 19 18 40 40 H 1.09000 * 110.50814 * 94.67216 * 26 19 18 41 41 H 1.07999 * 125.80708 * 179.70391 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8749 -3.6404 -0.0189 11 6 0.8578 -4.5384 -0.0178 12 7 0.9891 -5.9382 -0.0248 13 6 -0.1100 -6.7181 -0.0287 14 8 -1.2126 -6.2123 -0.0256 15 6 0.0306 -8.2185 -0.0357 16 1 0.5570 -8.5476 -0.9316 17 6 0.7694 -8.6988 1.2332 18 8 0.1166 -9.9354 1.5944 19 6 -1.2915 -9.7008 1.3746 20 1 -1.7125 -9.1219 2.1966 21 6 -2.0352 -11.0289 1.2209 22 6 -1.9973 -11.7910 2.5470 23 6 -2.7294 -13.0996 2.3954 24 8 -3.2303 -13.3923 1.3357 25 8 -2.8248 -13.9398 3.4378 26 6 -1.3562 -8.8927 0.0595 27 6 -0.3513 -3.8198 -0.0146 28 7 -0.0716 -2.5410 -0.0081 29 1 -0.4850 0.8400 0.0004 30 1 2.9301 -3.8707 -0.0258 31 1 1.8708 -6.3426 -0.0269 32 1 1.8226 -8.8754 1.0151 33 1 0.6660 -7.9655 2.0330 34 1 -3.0711 -10.8352 0.9426 35 1 -1.5561 -11.6259 0.4449 36 1 -0.9614 -11.9848 2.8252 37 1 -2.4764 -11.1941 3.3230 38 1 -3.3042 -14.7670 3.2925 39 1 -2.1437 -8.1409 0.1115 40 1 -1.5169 -9.5572 -0.7894 41 1 -1.3419 -4.2499 -0.0177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:58 Heat of formation + Delta-G solvation = -124.551540 kcal Electronic energy + Delta-G solvation = -26219.484504 eV Core-core repulsion = 22100.022856 eV Total energy + Delta-G solvation = -4119.461648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.86115 -41.29183 -40.91230 -39.41460 -37.15129 -35.94834 -35.03796 -34.66234 -33.26331 -32.18746 -30.31427 -29.29144 -26.85410 -25.87104 -24.41605 -22.90463 -22.56406 -21.61656 -21.34086 -20.94797 -19.36386 -19.05533 -18.38450 -17.58557 -17.42234 -17.30492 -17.00466 -16.62819 -16.36166 -16.17253 -15.81278 -15.63082 -15.15196 -14.86932 -14.66806 -14.35925 -14.16995 -13.86893 -13.49519 -13.31748 -13.17643 -12.90219 -12.84304 -12.80961 -12.53942 -12.41747 -12.09397 -12.06484 -11.95493 -11.84374 -11.70265 -11.56293 -11.00841 -10.82448 -10.77553 -10.61365 -10.09563 -8.52036 -8.46464 -6.23658 1.22028 1.24017 1.40298 1.51948 1.58131 1.87347 2.04583 2.17456 2.28826 2.52599 2.82704 2.99293 3.09814 3.43100 3.67784 3.88968 3.92601 4.01240 4.10354 4.29012 4.36214 4.44825 4.49138 4.60864 4.63367 4.76350 4.78912 4.80165 5.00315 5.01437 5.03662 5.07220 5.12502 5.22892 5.30928 5.49957 5.65528 5.80222 5.96890 6.32729 6.74883 6.76401 7.01950 7.39918 7.48251 7.69625 8.52978 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.043182 B = 0.001929 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.262474 B =14509.707071 C =14681.872434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.079 4.079 11 C -0.045 4.045 12 N -0.613 5.613 13 C 0.504 3.496 14 O -0.575 6.575 15 C -0.128 4.128 16 H 0.138 0.862 17 C 0.060 3.940 18 O -0.371 6.371 19 C 0.078 3.922 20 H 0.074 0.926 21 C -0.096 4.096 22 C -0.111 4.111 23 C 0.484 3.516 24 O -0.555 6.555 25 O -0.516 6.516 26 C -0.143 4.143 27 C -0.060 4.060 28 N -0.312 5.312 29 H 0.276 0.724 30 H 0.189 0.811 31 H 0.421 0.579 32 H 0.132 0.868 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.426 0.574 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -22.638 4.846 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.230 4.230 11 C -0.151 4.151 12 N -0.257 5.257 13 C 0.292 3.708 14 O -0.454 6.454 15 C -0.150 4.150 16 H 0.156 0.844 17 C -0.018 4.018 18 O -0.290 6.290 19 C 0.021 3.979 20 H 0.092 0.908 21 C -0.134 4.134 22 C -0.148 4.148 23 C 0.329 3.671 24 O -0.447 6.447 25 O -0.329 6.329 26 C -0.181 4.181 27 C -0.236 4.236 28 N -0.144 5.144 29 H 0.085 0.915 30 H 0.206 0.794 31 H 0.258 0.742 32 H 0.150 0.850 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.288 0.712 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.092 -20.909 4.733 21.540 hybrid contribution 0.083 -0.444 -0.351 0.572 sum 2.175 -21.353 4.382 21.906 Atomic orbital electron populations 1.70399 1.08437 1.29049 1.37519 1.26883 0.96466 1.04368 0.94187 0.84598 0.78332 0.74108 0.79202 1.18956 1.20308 1.16628 1.20618 0.92967 0.80905 1.54017 0.84106 1.44841 1.03597 1.04870 1.40527 1.22029 0.98886 0.84162 1.17882 1.17349 0.92656 0.83950 1.21157 1.42459 1.09876 1.02210 1.71199 1.20992 0.83551 0.90076 0.76185 1.90581 1.27668 1.75822 1.51352 1.22662 0.99943 0.88807 1.03575 0.84448 1.23456 0.98872 0.86309 0.93121 1.89102 1.18402 1.33665 1.87853 1.23026 0.82668 0.95738 0.96465 0.90811 1.21423 1.01133 0.93954 0.96845 1.21396 1.02847 0.89713 1.00824 1.23833 0.76407 0.86400 0.80462 1.90725 1.46992 1.76766 1.30195 1.84518 1.72367 1.34385 1.41666 1.22977 0.96297 0.99593 0.99195 1.24161 0.99071 0.90948 1.09390 1.78151 0.92114 1.16688 1.27462 0.91458 0.79393 0.74186 0.84996 0.92543 0.89670 0.90465 0.85971 0.85899 0.71237 0.90158 0.88602 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.75 11.81 21.66 0.26 -47.49 16 2 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 3 Si 1.02 38.35 29.55 68.60 2.03 40.37 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.24 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.35 -18.58 10.25 84.01 0.86 -17.72 16 8 H 0.14 6.36 7.83 -2.91 -0.02 6.33 16 9 N -0.17 -9.30 3.74 -190.01 -0.71 -10.01 16 10 C -0.08 -3.56 11.49 83.37 0.96 -2.60 16 11 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 12 N -0.61 -19.29 5.41 -303.92 -1.64 -20.93 16 13 C 0.50 15.78 7.01 87.66 0.61 16.39 16 14 O -0.57 -23.74 12.44 -3.13 -0.04 -23.78 16 15 C -0.13 -2.57 3.51 -10.52 -0.04 -2.60 16 16 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.06 0.98 7.11 72.49 0.52 1.50 16 18 O -0.37 -6.65 11.00 -148.98 -1.64 -8.29 16 19 C 0.08 1.38 3.27 31.10 0.10 1.49 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.10 -1.48 4.14 30.59 0.13 -1.35 16 22 C -0.11 -1.37 5.73 29.85 0.17 -1.20 16 23 C 0.48 7.47 8.33 71.24 0.59 8.07 16 24 O -0.56 -12.51 16.74 21.98 0.37 -12.14 16 25 O -0.52 -5.57 13.42 -51.40 -0.69 -6.26 16 26 C -0.14 -2.93 6.21 31.61 0.20 -2.74 16 27 C -0.06 -3.26 10.85 85.42 0.93 -2.33 16 28 N -0.31 -18.76 10.40 -56.47 -0.59 -19.35 16 29 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.19 6.52 8.06 -2.91 -0.02 6.50 16 31 H 0.42 9.08 8.81 -92.71 -0.82 8.26 16 32 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.09 7.86 -2.39 -0.02 1.07 16 34 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.08 1.28 8.10 -2.39 -0.02 1.27 16 36 H 0.12 1.36 7.91 -2.39 -0.02 1.34 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.43 1.25 9.10 -74.06 -0.67 0.57 16 39 H 0.08 2.12 6.51 -2.39 -0.02 2.10 16 40 H 0.10 1.68 7.87 -2.39 -0.02 1.66 16 41 H 0.17 9.02 5.92 -2.91 -0.02 9.00 16 Total: -1.00 -82.36 353.08 2.71 -79.66 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -0.39 Total: 32.98 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.76 Total: -4.76 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -2.68 Total: -97.79 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -2.00 Total: -50.47 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -82.36 2.71 -79.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.896 kcal (2) G-P(sol) polarization free energy of solvation -82.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds