Wall clock time and date at job start Tue Mar 31 2020 13:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48504 * 109.46920 * 90.00571 * 3 2 1 5 5 H 1.48499 * 109.47019 * 210.00123 * 3 2 1 6 6 H 1.48500 * 109.47105 * 330.00320 * 3 2 1 7 7 C 1.38986 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99760 * 13.58918 * 7 2 1 9 9 N 1.37323 * 120.00523 * 193.58643 * 7 2 1 10 10 C 1.36488 * 126.06920 * 188.35950 * 9 7 2 11 11 C 1.35675 * 107.51031 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08488 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00158 * 180.02562 * 12 11 10 14 14 O 1.21306 * 119.99614 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00144 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.80771 * 62.17403 * 15 13 12 17 17 C 1.55004 * 110.90912 * 298.54267 * 15 13 12 18 18 O 1.44373 * 103.49040 * 204.77865 * 17 15 13 19 19 C 1.43747 * 106.97807 * 40.06309 * 18 17 15 20 20 H 1.08996 * 109.88026 * 92.90772 * 19 18 17 21 21 C 1.53000 * 109.87722 * 213.91305 * 19 18 17 22 22 C 1.53002 * 109.46944 * 293.54007 * 21 19 18 23 23 C 1.50698 * 109.47218 * 179.97438 * 22 21 19 24 24 O 1.20825 * 119.99899 * 0.02562 * 23 22 21 25 25 O 1.34226 * 120.00082 * 179.97438 * 23 22 21 26 26 C 1.54104 * 107.29108 * 333.48338 * 19 18 17 27 27 C 1.40652 * 107.83403 * 359.97438 * 11 10 9 28 28 N 1.30907 * 108.38626 * 359.72082 * 27 11 10 29 29 H 0.96995 * 119.99579 * 174.71062 * 1 2 3 30 30 H 1.08002 * 126.24646 * 359.97438 * 10 9 7 31 31 H 0.97000 * 120.00555 * 359.97438 * 12 11 10 32 32 H 1.08999 * 110.61401 * 323.28439 * 17 15 13 33 33 H 1.09001 * 110.61319 * 86.27592 * 17 15 13 34 34 H 1.08996 * 109.47259 * 53.54125 * 21 19 18 35 35 H 1.09000 * 109.47005 * 173.54887 * 21 19 18 36 36 H 1.09004 * 109.47465 * 300.00342 * 22 21 19 37 37 H 1.09003 * 109.46885 * 60.00192 * 22 21 19 38 38 H 0.96697 * 117.00085 * 180.02562 * 25 23 22 39 39 H 1.09004 * 110.48421 * 243.35779 * 26 19 18 40 40 H 1.09000 * 110.48681 * 120.70903 * 26 19 18 41 41 H 1.07999 * 125.80892 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4946 2.0464 1.4001 5 1 3.5445 1.4402 -0.7001 6 1 1.4444 2.6527 -0.7000 7 6 2.0080 -1.2036 -0.0005 8 1 1.4907 -2.1258 -0.2207 9 7 3.3524 -1.2204 0.2788 10 6 4.1850 -2.2951 0.1577 11 6 5.4261 -1.8941 0.5313 12 7 6.5825 -2.6933 0.5543 13 6 7.7583 -2.1662 0.9496 14 8 7.8188 -1.0020 1.2850 15 6 8.9977 -3.0229 0.9749 16 1 9.2433 -3.3783 -0.0258 17 6 8.8297 -4.2098 1.9576 18 8 10.1872 -4.5411 2.3208 19 6 10.8936 -3.2995 2.4817 20 1 10.8590 -2.9859 3.5250 21 6 12.3479 -3.4669 2.0369 22 6 13.0655 -4.4252 2.9897 23 6 14.4977 -4.5906 2.5513 24 8 14.9031 -4.0021 1.5770 25 8 15.3234 -5.3910 3.2436 26 6 10.1887 -2.2535 1.5964 27 6 5.3503 -0.5363 0.8902 28 7 4.1139 -0.1360 0.7326 29 1 -0.4849 -0.8365 -0.0774 30 1 3.9064 -3.2844 -0.1742 31 1 6.5342 -3.6244 0.2865 32 1 8.2612 -3.9036 2.8357 33 1 8.3483 -5.0530 1.4623 34 1 12.3741 -3.8727 1.0256 35 1 12.8465 -2.4978 2.0527 36 1 13.0392 -4.0195 4.0011 37 1 12.5668 -5.3943 2.9739 38 1 16.2331 -5.4651 2.9243 39 1 10.8619 -1.8980 0.8163 40 1 9.8307 -1.4205 2.2015 41 1 6.1730 0.0735 1.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:02 Heat of formation + Delta-G solvation = -107.873069 kcal Electronic energy + Delta-G solvation = -26278.411601 eV Core-core repulsion = 22159.673185 eV Total energy + Delta-G solvation = -4118.738415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80415 -40.50425 -39.86093 -38.41871 -36.59653 -34.53029 -34.11450 -33.47087 -32.43960 -30.67894 -29.53578 -28.19804 -25.19663 -24.72803 -23.39255 -21.92047 -21.16441 -21.04126 -19.99657 -19.80545 -18.48338 -18.18669 -17.36560 -16.94361 -16.71062 -16.42048 -16.00113 -15.62952 -15.25147 -14.91789 -14.75020 -13.97309 -13.83385 -13.78216 -13.51854 -13.50965 -13.30357 -13.09965 -12.47741 -12.37183 -12.30179 -11.95416 -11.83300 -11.70245 -11.43644 -11.30537 -11.01560 -10.95888 -10.91407 -10.75189 -10.17734 -10.05244 -10.00674 -9.44481 -9.38210 -8.70437 -8.30284 -7.37109 -7.06227 -4.50070 1.81738 2.57325 2.63688 3.07967 3.23216 3.49152 3.60248 3.62433 3.88399 3.97830 4.13997 4.21303 4.31602 4.32202 4.52058 4.63426 4.66937 4.74942 4.91478 4.94069 5.05444 5.08591 5.25308 5.28229 5.39138 5.44455 5.62328 5.70062 5.85821 5.87907 5.94344 6.07209 6.10484 6.54172 6.58115 6.69456 6.82750 7.33062 7.48449 7.65274 7.90549 8.01476 8.26711 8.56501 8.91311 9.17285 10.08055 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.046130 B = 0.002030 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.839779 B =13789.879878 C =14175.097588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.041 3.959 3 Si 1.113 2.887 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.312 1.312 7 C -0.381 4.381 8 H 0.113 0.887 9 N -0.148 5.148 10 C -0.063 4.063 11 C -0.055 4.055 12 N -0.623 5.623 13 C 0.510 3.490 14 O -0.532 6.532 15 C -0.141 4.141 16 H 0.111 0.889 17 C 0.060 3.940 18 O -0.371 6.371 19 C 0.076 3.924 20 H 0.075 0.925 21 C -0.107 4.107 22 C -0.112 4.112 23 C 0.478 3.522 24 O -0.517 6.517 25 O -0.520 6.520 26 C -0.135 4.135 27 C 0.003 3.997 28 N -0.354 5.354 29 H 0.280 0.720 30 H 0.152 0.848 31 H 0.400 0.600 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.409 0.591 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.710 -12.168 4.653 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.174 4.174 3 Si 0.943 3.057 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.242 1.242 7 C -0.513 4.513 8 H 0.131 0.869 9 N 0.086 4.914 10 C -0.215 4.215 11 C -0.160 4.160 12 N -0.266 5.266 13 C 0.295 3.705 14 O -0.409 6.409 15 C -0.163 4.163 16 H 0.129 0.871 17 C -0.017 4.017 18 O -0.290 6.290 19 C 0.018 3.982 20 H 0.093 0.907 21 C -0.145 4.145 22 C -0.150 4.150 23 C 0.321 3.679 24 O -0.406 6.406 25 O -0.332 6.332 26 C -0.173 4.173 27 C -0.169 4.169 28 N -0.188 5.188 29 H 0.092 0.908 30 H 0.169 0.831 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.268 0.732 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 22.454 -8.785 4.966 24.617 hybrid contribution 1.025 -3.126 -0.620 3.347 sum 23.479 -11.911 4.346 26.684 Atomic orbital electron populations 1.70885 1.06364 1.31993 1.36287 1.26935 0.95655 1.04039 0.90805 0.82746 0.73339 0.71084 0.78574 1.20630 1.19446 1.24196 1.21101 0.79590 0.98640 1.51997 0.86914 1.44713 1.06549 1.05035 1.35063 1.21321 0.89467 0.94943 1.15775 1.17164 0.85994 0.92739 1.20145 1.42519 1.06458 1.13114 1.64472 1.19998 0.83745 0.88120 0.78592 1.90590 1.84945 1.17183 1.48153 1.22831 0.94334 0.96739 1.02357 0.87116 1.23521 0.84835 0.96448 0.96939 1.88856 1.21734 1.27914 1.90482 1.22820 0.91595 0.84378 0.99367 0.90702 1.21669 0.93004 1.00031 0.99767 1.21385 0.87463 1.04059 1.02073 1.23676 0.89198 0.74789 0.80265 1.90739 1.77467 1.45424 1.26937 1.84551 1.26973 1.63761 1.57876 1.22910 0.95518 0.98789 1.00092 1.23699 0.94931 0.93343 1.04962 1.76466 1.04109 1.10655 1.27567 0.90841 0.83055 0.76663 0.91232 0.88165 0.89965 0.89530 0.87548 0.86808 0.73209 0.89665 0.88238 0.79946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.65 13.68 55.49 0.76 -21.89 16 2 C 0.04 1.12 5.50 -17.50 -0.10 1.02 16 3 Si 1.11 27.85 26.25 -169.99 -4.46 23.39 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.27 -6.84 6.36 56.52 0.36 -6.48 16 6 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.38 -10.16 10.54 -14.81 -0.16 -10.31 16 8 H 0.11 2.91 8.06 -52.48 -0.42 2.48 16 9 N -0.15 -3.79 3.61 -11.41 -0.04 -3.83 16 10 C -0.06 -1.35 11.49 -16.40 -0.19 -1.54 16 11 C -0.06 -1.14 6.90 -83.84 -0.58 -1.72 16 12 N -0.62 -9.44 5.42 -10.00 -0.05 -9.49 16 13 C 0.51 7.49 7.14 -10.99 -0.08 7.42 16 14 O -0.53 -9.86 12.66 5.53 0.07 -9.79 16 15 C -0.14 -1.42 3.52 -89.76 -0.32 -1.73 16 16 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.06 0.52 7.12 38.22 0.27 0.80 16 18 O -0.37 -3.42 10.81 -35.23 -0.38 -3.80 16 19 C 0.08 0.62 3.41 -26.15 -0.09 0.53 16 20 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 21 C -0.11 -0.78 4.01 -26.73 -0.11 -0.89 16 22 C -0.11 -0.69 5.72 -27.88 -0.16 -0.85 16 23 C 0.48 3.69 8.33 36.00 0.30 3.99 16 24 O -0.52 -5.70 16.74 -18.75 -0.31 -6.01 16 25 O -0.52 -2.96 13.42 -39.25 -0.53 -3.49 16 26 C -0.14 -1.30 6.02 -25.20 -0.15 -1.45 16 27 C 0.00 0.07 10.85 -17.04 -0.18 -0.11 16 28 N -0.35 -9.25 7.33 30.80 0.23 -9.02 16 29 H 0.28 7.28 8.73 -40.82 -0.36 6.92 16 30 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 31 H 0.40 4.46 8.82 -40.82 -0.36 4.10 16 32 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.67 7.89 -51.93 -0.41 0.26 16 38 H 0.41 0.73 9.10 45.56 0.41 1.15 16 39 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 40 H 0.10 1.13 6.94 -51.93 -0.36 0.77 16 41 H 0.18 4.19 5.92 -52.49 -0.31 3.88 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -34.49 349.08 -5.41 -39.91 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.42 Total: 3.64 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.53 Total: -4.87 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.89 Total: -44.24 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.15 Total: -23.09 kcal Atomic # 14 Polarization: 27.85 SS G_CDS: -4.46 Total: 23.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.49 -5.41 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.967 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds