Wall clock time and date at job start Tue Mar 31 2020 13:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48504 * 109.46920 * 90.00571 * 3 2 1 5 5 H 1.48499 * 109.47019 * 210.00123 * 3 2 1 6 6 H 1.48500 * 109.47105 * 330.00320 * 3 2 1 7 7 C 1.38986 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99760 * 13.58918 * 7 2 1 9 9 N 1.37323 * 120.00523 * 193.58643 * 7 2 1 10 10 C 1.36488 * 126.06920 * 188.35950 * 9 7 2 11 11 C 1.35675 * 107.51031 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08488 * 180.02562 * 11 10 9 13 13 C 1.34783 * 120.00158 * 180.02562 * 12 11 10 14 14 O 1.21306 * 119.99614 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00144 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.80771 * 62.17403 * 15 13 12 17 17 C 1.55004 * 110.90912 * 298.54267 * 15 13 12 18 18 O 1.44373 * 103.49040 * 204.77865 * 17 15 13 19 19 C 1.43747 * 106.97807 * 40.06309 * 18 17 15 20 20 H 1.08996 * 109.88026 * 92.90772 * 19 18 17 21 21 C 1.53000 * 109.87722 * 213.91305 * 19 18 17 22 22 C 1.53002 * 109.46944 * 293.54007 * 21 19 18 23 23 C 1.50698 * 109.47218 * 179.97438 * 22 21 19 24 24 O 1.20825 * 119.99899 * 0.02562 * 23 22 21 25 25 O 1.34226 * 120.00082 * 179.97438 * 23 22 21 26 26 C 1.54104 * 107.29108 * 333.48338 * 19 18 17 27 27 C 1.40652 * 107.83403 * 359.97438 * 11 10 9 28 28 N 1.30907 * 108.38626 * 359.72082 * 27 11 10 29 29 H 0.96995 * 119.99579 * 174.71062 * 1 2 3 30 30 H 1.08002 * 126.24646 * 359.97438 * 10 9 7 31 31 H 0.97000 * 120.00555 * 359.97438 * 12 11 10 32 32 H 1.08999 * 110.61401 * 323.28439 * 17 15 13 33 33 H 1.09001 * 110.61319 * 86.27592 * 17 15 13 34 34 H 1.08996 * 109.47259 * 53.54125 * 21 19 18 35 35 H 1.09000 * 109.47005 * 173.54887 * 21 19 18 36 36 H 1.09004 * 109.47465 * 300.00342 * 22 21 19 37 37 H 1.09003 * 109.46885 * 60.00192 * 22 21 19 38 38 H 0.96697 * 117.00085 * 180.02562 * 25 23 22 39 39 H 1.09004 * 110.48421 * 243.35779 * 26 19 18 40 40 H 1.09000 * 110.48681 * 120.70903 * 26 19 18 41 41 H 1.07999 * 125.80892 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4946 2.0464 1.4001 5 1 3.5445 1.4402 -0.7001 6 1 1.4444 2.6527 -0.7000 7 6 2.0080 -1.2036 -0.0005 8 1 1.4907 -2.1258 -0.2207 9 7 3.3524 -1.2204 0.2788 10 6 4.1850 -2.2951 0.1577 11 6 5.4261 -1.8941 0.5313 12 7 6.5825 -2.6933 0.5543 13 6 7.7583 -2.1662 0.9496 14 8 7.8188 -1.0020 1.2850 15 6 8.9977 -3.0229 0.9749 16 1 9.2433 -3.3783 -0.0258 17 6 8.8297 -4.2098 1.9576 18 8 10.1872 -4.5411 2.3208 19 6 10.8936 -3.2995 2.4817 20 1 10.8590 -2.9859 3.5250 21 6 12.3479 -3.4669 2.0369 22 6 13.0655 -4.4252 2.9897 23 6 14.4977 -4.5906 2.5513 24 8 14.9031 -4.0021 1.5770 25 8 15.3234 -5.3910 3.2436 26 6 10.1887 -2.2535 1.5964 27 6 5.3503 -0.5363 0.8902 28 7 4.1139 -0.1360 0.7326 29 1 -0.4849 -0.8365 -0.0774 30 1 3.9064 -3.2844 -0.1742 31 1 6.5342 -3.6244 0.2865 32 1 8.2612 -3.9036 2.8357 33 1 8.3483 -5.0530 1.4623 34 1 12.3741 -3.8727 1.0256 35 1 12.8465 -2.4978 2.0527 36 1 13.0392 -4.0195 4.0011 37 1 12.5668 -5.3943 2.9739 38 1 16.2331 -5.4651 2.9243 39 1 10.8619 -1.8980 0.8163 40 1 9.8307 -1.4205 2.2015 41 1 6.1730 0.0735 1.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:01 Heat of formation + Delta-G solvation = -133.565307 kcal Electronic energy + Delta-G solvation = -26279.525700 eV Core-core repulsion = 22159.673185 eV Total energy + Delta-G solvation = -4119.852514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10170 -41.35474 -40.99770 -39.54811 -37.14328 -36.12416 -35.27237 -34.67916 -33.35496 -32.51440 -30.51790 -29.59835 -26.48704 -25.78912 -24.53408 -23.09123 -22.41863 -21.65379 -21.60758 -21.09837 -19.91672 -19.04580 -18.49349 -18.04910 -17.58297 -17.30437 -16.93484 -16.67471 -16.25726 -16.14250 -16.05115 -15.56319 -15.33612 -15.22205 -14.59879 -14.36230 -14.32461 -14.23735 -14.04109 -13.55323 -13.23056 -12.94264 -12.91349 -12.62144 -12.53253 -12.37361 -12.07549 -12.04819 -11.97287 -11.83858 -11.67783 -11.55939 -11.31133 -10.79192 -10.67734 -10.59450 -10.25452 -9.38302 -8.74113 -6.49621 1.03244 1.25136 1.42212 1.50598 1.65642 1.90156 1.96577 2.19760 2.28313 2.32148 2.48752 2.86977 2.92599 3.36652 3.70519 3.86704 3.91791 3.97812 4.13331 4.23686 4.26113 4.31188 4.36861 4.53357 4.62931 4.75624 4.77769 4.78785 4.87685 4.90574 5.02466 5.06495 5.08253 5.26722 5.29811 5.39435 5.66757 5.81318 5.86979 6.11287 6.40615 6.65620 7.02565 7.05295 7.22130 7.37303 8.08931 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.046130 B = 0.002030 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.839779 B =13789.879878 C =14175.097588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.011 3.989 3 Si 1.143 2.857 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.304 1.304 7 C -0.396 4.396 8 H 0.115 0.885 9 N -0.183 5.183 10 C -0.045 4.045 11 C -0.035 4.035 12 N -0.615 5.615 13 C 0.512 3.488 14 O -0.570 6.570 15 C -0.130 4.130 16 H 0.136 0.864 17 C 0.062 3.938 18 O -0.374 6.374 19 C 0.082 3.918 20 H 0.084 0.916 21 C -0.103 4.103 22 C -0.110 4.110 23 C 0.483 3.517 24 O -0.557 6.557 25 O -0.517 6.517 26 C -0.138 4.138 27 C -0.012 4.012 28 N -0.384 5.384 29 H 0.281 0.719 30 H 0.191 0.809 31 H 0.423 0.577 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.426 0.574 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.994 -14.548 4.916 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.200 4.200 3 Si 0.973 3.027 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.234 1.234 7 C -0.527 4.527 8 H 0.132 0.868 9 N 0.049 4.951 10 C -0.197 4.197 11 C -0.140 4.140 12 N -0.260 5.260 13 C 0.300 3.700 14 O -0.449 6.449 15 C -0.152 4.152 16 H 0.154 0.846 17 C -0.015 4.015 18 O -0.293 6.293 19 C 0.024 3.976 20 H 0.102 0.898 21 C -0.140 4.140 22 C -0.147 4.147 23 C 0.327 3.673 24 O -0.448 6.448 25 O -0.330 6.330 26 C -0.176 4.176 27 C -0.186 4.186 28 N -0.218 5.218 29 H 0.092 0.908 30 H 0.208 0.792 31 H 0.261 0.739 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.287 0.713 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 24.745 -11.221 5.229 27.668 hybrid contribution 0.663 -2.520 -0.628 2.680 sum 25.407 -13.740 4.601 29.249 Atomic orbital electron populations 1.70886 1.06625 1.32088 1.39053 1.27381 0.95980 1.05463 0.91183 0.82302 0.72338 0.70301 0.77806 1.21563 1.20646 1.23385 1.21053 0.80432 0.98485 1.52682 0.86770 1.44736 1.06638 1.05963 1.37721 1.22093 0.89106 0.95508 1.12996 1.17248 0.87519 0.92072 1.17192 1.42506 1.04944 1.13831 1.64762 1.20850 0.84535 0.88012 0.76600 1.90584 1.85598 1.19339 1.49367 1.22846 0.91625 0.96412 1.04277 0.84597 1.23595 0.84844 0.96676 0.96376 1.88865 1.21836 1.28138 1.90480 1.22802 0.91673 0.83597 0.99506 0.89817 1.21584 0.92584 1.00291 0.99558 1.21407 0.86438 1.04191 1.02633 1.23921 0.89794 0.74051 0.79500 1.90730 1.78293 1.47115 1.28683 1.84517 1.28154 1.62897 1.57444 1.22920 0.95676 0.98678 1.00315 1.23959 0.94322 0.95074 1.05265 1.76341 1.05231 1.12142 1.28114 0.90845 0.79159 0.73876 0.92081 0.85419 0.90934 0.89665 0.85605 0.86094 0.71291 0.89061 0.90248 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.78 13.68 21.66 0.30 -47.48 16 2 C 0.01 0.61 5.50 84.95 0.47 1.07 16 3 Si 1.14 57.84 26.25 68.60 1.80 59.64 16 4 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 5 H -0.28 -14.45 6.36 99.48 0.63 -13.82 16 6 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 7 C -0.40 -21.18 10.54 84.01 0.89 -20.30 16 8 H 0.11 5.90 8.06 -2.91 -0.02 5.88 16 9 N -0.18 -9.25 3.61 -190.01 -0.69 -9.94 16 10 C -0.05 -1.84 11.49 83.37 0.96 -0.88 16 11 C -0.03 -1.34 6.90 37.73 0.26 -1.08 16 12 N -0.61 -16.54 5.42 -303.93 -1.65 -18.19 16 13 C 0.51 13.74 7.14 87.65 0.63 14.37 16 14 O -0.57 -20.46 12.66 -3.11 -0.04 -20.50 16 15 C -0.13 -2.20 3.52 -10.24 -0.04 -2.23 16 16 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 17 C 0.06 0.86 7.12 72.67 0.52 1.37 16 18 O -0.37 -5.59 10.81 -148.98 -1.61 -7.20 16 19 C 0.08 1.12 3.41 30.97 0.11 1.22 16 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 21 C -0.10 -1.28 4.01 30.60 0.12 -1.16 16 22 C -0.11 -1.08 5.72 29.85 0.17 -0.91 16 23 C 0.48 6.56 8.33 71.24 0.59 7.16 16 24 O -0.56 -11.69 16.74 21.97 0.37 -11.32 16 25 O -0.52 -4.76 13.42 -51.38 -0.69 -5.45 16 26 C -0.14 -2.37 6.02 31.59 0.19 -2.18 16 27 C -0.01 -0.58 10.85 85.42 0.93 0.35 16 28 N -0.38 -20.09 7.33 -56.47 -0.41 -20.51 16 29 H 0.28 14.91 8.73 -92.71 -0.81 14.10 16 30 H 0.19 6.08 8.06 -2.91 -0.02 6.05 16 31 H 0.42 7.48 8.82 -92.71 -0.82 6.66 16 32 H 0.06 0.97 8.04 -2.39 -0.02 0.95 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.12 1.07 7.89 -2.39 -0.02 1.05 16 38 H 0.43 0.69 9.10 -74.06 -0.67 0.02 16 39 H 0.09 1.45 7.70 -2.39 -0.02 1.43 16 40 H 0.08 1.73 6.94 -2.39 -0.02 1.71 16 41 H 0.19 8.44 5.92 -2.91 -0.02 8.43 16 Total: -1.00 -75.74 349.08 2.66 -73.08 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.51 Total: 11.06 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.79 Total: -3.19 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -2.45 Total: -96.12 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.97 Total: -44.47 kcal Atomic # 14 Polarization: 57.84 SS G_CDS: 1.80 Total: 59.64 kcal Total: -75.74 2.66 -73.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.486 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds