Wall clock time and date at job start Tue Mar 31 2020 14:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21258 * 119.99559 * 2 1 4 4 C 1.47180 * 120.00192 * 180.02562 * 2 1 3 5 5 C 1.39766 * 120.13386 * 353.98442 * 4 2 1 6 6 C 1.38567 * 119.74601 * 180.02562 * 5 4 2 7 7 N 1.39843 * 119.99271 * 179.97438 * 6 5 4 8 8 C 1.34768 * 120.00076 * 217.92975 * 7 6 5 9 9 O 1.21604 * 120.00364 * 5.89732 * 8 7 6 10 10 C 1.47601 * 119.99966 * 185.89391 * 8 7 6 11 11 C 1.40040 * 119.89610 * 359.72359 * 10 8 7 12 12 C 1.36307 * 120.10426 * 179.75647 * 11 10 8 13 13 C 1.40896 * 119.88904 * 0.51810 * 12 11 10 14 14 C 1.41098 * 120.09939 * 179.71309 * 13 12 11 15 15 H 1.07997 * 120.00184 * 208.16227 * 14 13 12 16 16 C 1.40230 * 119.99738 * 28.15861 * 14 13 12 17 17 N 1.30644 * 120.00255 * 16.33607 * 16 14 13 18 18 Si 1.86800 * 120.00183 * 196.33053 * 16 14 13 19 19 H 1.48506 * 109.46813 * 89.99923 * 18 16 14 20 20 H 1.48497 * 109.47546 * 210.00367 * 18 16 14 21 21 H 1.48501 * 109.47085 * 330.00740 * 18 16 14 22 22 C 1.40897 * 119.80024 * 359.74056 * 13 12 11 23 23 C 1.36296 * 119.89330 * 359.97438 * 22 13 12 24 24 C 1.39062 * 120.01998 * 0.02562 * 6 5 4 25 25 C 1.38248 * 120.27695 * 0.24190 * 24 6 5 26 26 C 1.37960 * 120.25437 * 359.48132 * 25 24 6 27 27 C 1.50699 * 120.01200 * 180.24078 * 26 25 24 28 28 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47221 * 299.99719 * 1 2 3 30 30 H 1.09007 * 109.47500 * 59.99601 * 1 2 3 31 31 H 1.07999 * 120.13164 * 0.03970 * 5 4 2 32 32 H 0.97001 * 119.99685 * 37.92472 * 7 6 5 33 33 H 1.07999 * 119.94639 * 359.97438 * 11 10 8 34 34 H 1.07997 * 120.05319 * 180.23184 * 12 11 10 35 35 H 0.96999 * 120.00353 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.05013 * 179.97438 * 22 13 12 37 37 H 1.08005 * 119.94916 * 179.97438 * 23 22 13 38 38 H 1.08003 * 119.86537 * 179.97438 * 24 6 5 39 39 H 1.07999 * 119.87458 * 179.74356 * 25 24 6 40 40 H 1.09004 * 109.46932 * 264.07793 * 27 26 25 41 41 H 1.08999 * 109.47144 * 24.08290 * 27 26 25 42 42 H 1.08996 * 109.46850 * 144.08012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5527 -2.4834 0.1256 6 6 2.2537 -3.6787 0.1246 7 7 1.5684 -4.8911 0.2510 8 6 2.1014 -5.8939 0.9766 9 8 3.1239 -5.7103 1.6087 10 6 1.4440 -7.2151 1.0042 11 6 0.2633 -7.4225 0.2802 12 6 -0.3447 -8.6424 0.2987 13 6 0.2108 -9.6923 1.0566 14 6 -0.4182 -10.9550 1.0837 15 1 -0.3085 -11.5945 1.9470 16 6 -1.1859 -11.3796 -0.0103 17 7 -1.0691 -10.7768 -1.1635 18 14 -2.3754 -12.8071 0.1811 19 1 -3.7047 -12.2914 0.5965 20 1 -2.5043 -13.5212 -1.1145 21 1 -1.8631 -13.7433 1.2136 22 6 1.3958 -9.4773 1.7877 23 6 1.9998 -8.2558 1.7585 24 6 3.6387 -3.6729 -0.0010 25 6 4.3228 -2.4775 -0.1203 26 6 3.6358 -1.2811 -0.1264 27 6 4.3865 0.0185 -0.2621 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 0.4772 -2.4859 0.2232 32 1 0.7094 -5.0102 -0.1835 33 1 -0.1642 -6.6157 -0.2965 34 1 -1.2531 -8.8025 -0.2629 35 1 -1.5998 -11.0707 -1.9204 36 1 1.8248 -10.2791 2.3703 37 1 2.9081 -8.0899 2.3190 38 1 4.1826 -4.6060 -0.0011 39 1 5.3987 -2.4804 -0.2133 40 1 4.5638 0.4407 0.7270 41 1 5.3410 -0.1632 -0.7561 42 1 3.7977 0.7179 -0.8556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586138016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:59 Heat of formation + Delta-G solvation = -46.602968 kcal Electronic energy + Delta-G solvation = -25300.177151 eV Core-core repulsion = 21594.944870 eV Total energy + Delta-G solvation = -3705.232281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72953 -40.78353 -39.38890 -38.61155 -35.99717 -35.67304 -33.34249 -32.77916 -31.65456 -31.33936 -30.18411 -28.20518 -26.98815 -24.90677 -24.06005 -22.90086 -22.38545 -21.78262 -20.44430 -19.38725 -19.02497 -18.09825 -17.23086 -16.91031 -16.68618 -16.34125 -16.15531 -15.76800 -15.68708 -15.65289 -15.13973 -14.87358 -14.81618 -14.48154 -14.37772 -13.92886 -13.72022 -13.43843 -13.23850 -13.17459 -12.99026 -12.90933 -12.86047 -12.79564 -12.61253 -12.39597 -12.36159 -11.76517 -11.38565 -11.24689 -11.15326 -10.85865 -10.43435 -10.02571 -9.60714 -9.47267 -9.06710 -8.80000 -6.50563 -0.37305 0.12410 0.48357 1.13423 1.36258 1.40680 1.45000 1.53636 2.06212 2.14745 2.17283 2.67196 2.81717 3.10244 3.65396 3.71934 3.91897 3.99292 4.06801 4.20207 4.29238 4.35724 4.41762 4.49734 4.54880 4.66983 4.71689 4.80802 4.90503 4.93449 5.01456 5.02736 5.10760 5.14725 5.20728 5.26608 5.32212 5.44193 5.55488 5.57976 5.77933 5.87490 5.94842 5.97570 6.21444 6.51129 6.53868 6.54977 6.75581 6.85968 7.28506 8.16047 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002350 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.335556 B =11912.603328 C =12654.783972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.398 3.602 3 O -0.484 6.484 4 C -0.169 4.169 5 C -0.087 4.087 6 C 0.122 3.878 7 N -0.669 5.669 8 C 0.575 3.425 9 O -0.583 6.583 10 C -0.291 4.291 11 C -0.051 4.051 12 C -0.193 4.193 13 C 0.105 3.895 14 C -0.474 4.474 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.799 5.799 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.251 4.251 23 C -0.030 4.030 24 C -0.100 4.100 25 C -0.118 4.118 26 C -0.054 4.054 27 C -0.113 4.113 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.168 0.832 32 H 0.421 0.579 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.297 0.703 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 14.519 -2.840 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.280 3.720 3 O -0.363 6.363 4 C -0.171 4.171 5 C -0.107 4.107 6 C 0.028 3.972 7 N -0.315 5.315 8 C 0.370 3.630 9 O -0.466 6.466 10 C -0.296 4.296 11 C -0.070 4.070 12 C -0.212 4.212 13 C 0.102 3.898 14 C -0.501 4.501 15 H 0.103 0.897 16 C -0.180 4.180 17 N -0.423 5.423 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.270 4.270 23 C -0.049 4.049 24 C -0.120 4.120 25 C -0.136 4.136 26 C -0.055 4.055 27 C -0.169 4.169 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.185 0.815 32 H 0.261 0.739 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.370 15.123 -2.672 15.362 hybrid contribution -0.481 -1.260 -0.099 1.352 sum -0.851 13.864 -2.771 14.164 Atomic orbital electron populations 1.22287 0.90755 1.06381 1.06025 1.22830 0.93128 0.86451 0.69638 1.90479 1.72402 1.35147 1.38256 1.20367 0.94023 0.94986 1.07718 1.21478 1.01533 0.88903 0.98813 1.17838 0.92015 0.85962 1.01371 1.43302 1.24519 1.11571 1.52106 1.18502 0.83259 0.84314 0.76876 1.90661 1.26677 1.83621 1.45594 1.19033 1.03135 0.93613 1.13817 1.20749 0.93393 0.96964 0.95913 1.20960 1.02080 0.92544 1.05647 1.18156 0.89358 0.93545 0.88769 1.20114 1.25765 1.01503 1.02711 0.89677 1.26881 0.96867 1.00800 0.93478 1.69742 1.32629 1.38389 1.01514 0.85122 0.78076 0.77005 0.79161 1.18234 1.19061 1.18254 1.20889 0.98820 0.97387 1.09954 1.20511 0.97239 0.92309 0.94832 1.21417 0.93757 0.99196 0.97652 1.21087 1.00997 0.90519 1.01003 1.20441 0.93078 0.96320 0.95663 1.21011 0.99740 0.93270 1.02911 0.88220 0.87671 0.87322 0.81484 0.73916 0.85332 0.87015 0.89164 0.87776 0.87788 0.86750 0.83515 0.91033 0.90613 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 10.19 71.24 0.73 -1.51 16 2 C 0.40 7.81 7.16 28.04 0.20 8.01 16 3 O -0.48 -11.95 14.07 -2.96 -0.04 -11.99 16 4 C -0.17 -3.77 5.87 -20.17 -0.12 -3.89 16 5 C -0.09 -1.89 9.35 22.72 0.21 -1.67 16 6 C 0.12 3.45 6.17 38.14 0.24 3.68 16 7 N -0.67 -20.12 5.26 -306.41 -1.61 -21.73 16 8 C 0.57 22.56 7.46 86.72 0.65 23.20 16 9 O -0.58 -26.06 14.35 -4.04 -0.06 -26.12 16 10 C -0.29 -12.42 5.89 -19.93 -0.12 -12.54 16 11 C -0.05 -2.07 9.47 22.26 0.21 -1.86 16 12 C -0.19 -9.00 8.61 22.47 0.19 -8.81 16 13 C 0.10 5.23 5.54 -21.28 -0.12 5.11 16 14 C -0.47 -23.10 9.03 23.46 0.21 -22.89 16 15 H 0.09 4.00 7.90 -2.91 -0.02 3.98 16 16 C 0.04 1.74 5.14 85.35 0.44 2.18 16 17 N -0.80 -36.96 11.10 21.87 0.24 -36.72 16 18 Si 0.99 33.69 29.59 68.60 2.03 35.72 16 19 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 20 H -0.27 -8.65 7.11 99.48 0.71 -7.95 16 21 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 22 C -0.25 -11.96 9.73 22.47 0.22 -11.74 16 23 C -0.03 -1.36 9.52 22.25 0.21 -1.14 16 24 C -0.10 -2.99 8.64 22.47 0.19 -2.80 16 25 C -0.12 -2.93 9.65 22.21 0.21 -2.72 16 26 C -0.05 -1.28 5.92 -19.54 -0.12 -1.40 16 27 C -0.11 -2.32 8.74 71.24 0.62 -1.69 16 28 H 0.10 0.81 5.64 -2.38 -0.01 0.79 16 29 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 30 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.17 2.43 5.98 -2.91 -0.02 2.41 16 32 H 0.42 10.18 6.85 -92.71 -0.63 9.55 16 33 H 0.13 4.04 6.39 -2.91 -0.02 4.02 16 34 H 0.11 5.28 6.37 -2.91 -0.02 5.26 16 35 H 0.30 12.21 8.29 -92.71 -0.77 11.44 16 36 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 37 H 0.10 4.61 7.63 -2.91 -0.02 4.59 16 38 H 0.11 3.91 6.76 -2.91 -0.02 3.89 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 42 H 0.08 1.82 5.82 -2.39 -0.01 1.80 16 Total: -1.00 -62.19 353.99 5.08 -57.11 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.45 Total: 36.21 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.07 Total: -32.48 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -1.37 Total: -58.45 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.10 Total: -38.11 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Total: -62.19 5.08 -57.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586138016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.508 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds