Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21252 * 120.00290 * 2 1 4 4 C 1.47194 * 120.00279 * 180.02562 * 2 1 3 5 5 C 1.39619 * 120.09586 * 353.78135 * 4 2 1 6 6 C 1.39243 * 119.67306 * 180.02562 * 5 4 2 7 7 C 1.47834 * 120.05998 * 180.02562 * 6 5 4 8 8 O 1.21559 * 119.99852 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.39862 * 119.99988 * 184.53873 * 9 7 6 11 11 C 1.39310 * 119.94840 * 144.75773 * 10 9 7 12 12 C 1.38480 * 120.42667 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32406 * 0.02562 * 12 11 10 14 14 C 1.40741 * 119.89002 * 359.97438 * 13 12 11 15 15 C 1.41410 * 120.20869 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99639 * 145.95388 * 15 14 13 17 17 C 1.39927 * 120.00052 * 325.95505 * 15 14 13 18 18 N 1.30828 * 120.00035 * 2.67325 * 17 15 14 19 19 Si 1.86803 * 119.99812 * 182.67180 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00171 * 19 17 15 21 21 H 1.48498 * 109.47198 * 210.00071 * 19 17 15 22 22 H 1.48500 * 109.47327 * 330.00044 * 19 17 15 23 23 C 1.38258 * 119.94995 * 324.48788 * 10 9 7 24 24 C 1.39759 * 119.88216 * 0.02562 * 6 5 4 25 25 C 1.38101 * 120.19440 * 359.97438 * 24 6 5 26 26 C 1.38030 * 120.32927 * 359.75961 * 25 24 6 27 27 C 1.50696 * 119.93964 * 180.25506 * 26 25 24 28 28 H 1.09006 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 60.00079 * 1 2 3 30 30 H 1.08995 * 109.47064 * 299.99577 * 1 2 3 31 31 H 1.07999 * 120.16221 * 359.97438 * 5 4 2 32 32 H 0.97003 * 119.99952 * 4.53703 * 9 7 6 33 33 H 1.08000 * 119.78528 * 0.02562 * 11 10 9 34 34 H 1.08007 * 119.83697 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.05456 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99675 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.16272 * 359.97438 * 23 10 9 38 38 H 1.07996 * 119.90469 * 180.02562 * 24 6 5 39 39 H 1.07997 * 119.83448 * 180.02562 * 25 24 6 40 40 H 1.09002 * 109.47497 * 262.90527 * 27 26 25 41 41 H 1.08997 * 109.47529 * 22.90846 * 27 26 25 42 42 H 1.09003 * 109.47164 * 142.90785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5531 -2.4815 0.1297 6 6 2.2583 -3.6822 0.1286 7 6 1.5364 -4.9651 0.2655 8 8 0.3262 -4.9723 0.3796 9 7 2.2202 -6.1265 0.2648 10 6 1.5316 -7.3434 0.2986 11 6 2.0299 -8.4439 -0.3952 12 6 1.3564 -9.6536 -0.3682 13 6 0.1857 -9.7817 0.3451 14 6 -0.3298 -8.6786 1.0509 15 6 -1.5320 -8.8025 1.7852 16 1 -1.6626 -8.2505 2.7042 17 6 -2.5521 -9.6403 1.3211 18 7 -2.3737 -10.3490 0.2360 19 14 -4.1687 -9.7468 2.2510 20 1 -5.1095 -8.7242 1.7269 21 1 -4.7559 -11.0987 2.0699 22 1 -3.9260 -9.5020 3.6955 23 6 0.3605 -7.4538 1.0250 24 6 3.6497 -3.6724 -0.0021 25 6 4.3268 -2.4757 -0.1307 26 6 3.6357 -1.2809 -0.1361 27 6 4.3829 0.0195 -0.2827 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 0.4780 -2.4837 0.2317 32 1 3.1899 -6.1184 0.2408 33 1 2.9477 -8.3532 -0.9572 34 1 1.7515 -10.5008 -0.9092 35 1 -0.3362 -10.7271 0.3629 36 1 -3.0811 -10.9294 -0.0859 37 1 -0.0242 -6.6026 1.5671 38 1 4.1969 -4.6035 -0.0034 39 1 5.4021 -2.4749 -0.2318 40 1 4.5486 0.4565 0.7021 41 1 5.3431 -0.1653 -0.7643 42 1 3.7976 0.7083 -0.8919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587609448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = -23.401990 kcal Electronic energy + Delta-G solvation = -25528.922493 eV Core-core repulsion = 21824.696281 eV Total energy + Delta-G solvation = -3704.226211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73429 -39.70431 -38.18335 -37.06650 -34.56092 -33.28827 -32.95990 -32.24307 -29.82090 -29.63114 -28.60635 -27.10509 -25.29871 -24.04041 -23.03307 -21.36538 -20.92082 -20.56650 -19.30710 -18.09688 -17.35801 -16.20823 -15.91378 -15.70914 -15.44983 -15.38630 -15.07247 -14.71313 -14.56314 -14.29093 -14.24754 -13.78025 -13.66142 -13.08516 -12.87757 -12.58885 -12.41586 -12.24822 -12.23305 -12.14902 -12.03628 -11.73406 -11.56177 -11.21116 -11.15687 -10.67234 -10.48752 -10.22649 -9.84880 -9.77336 -9.49632 -9.33799 -9.11674 -9.00509 -8.93590 -7.39814 -6.92717 -6.58224 -4.37270 0.30488 0.78234 2.02143 2.66727 2.84352 3.11735 3.13166 3.16459 3.22884 3.44528 3.77900 3.78838 4.01410 4.39912 4.47001 4.68237 4.70381 4.80265 4.86110 5.03066 5.15277 5.18773 5.30386 5.38585 5.47070 5.65674 5.66349 5.71136 5.82172 5.93145 6.01199 6.20038 6.21563 6.33260 6.48038 6.68688 6.97357 7.01212 7.09014 7.25542 7.30828 7.51766 7.70419 7.93764 8.09451 8.11722 8.25767 8.58929 8.69593 8.96505 8.97763 10.32830 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.002803 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.755212 B = 9987.636688 C =11394.665436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.399 3.601 3 O -0.458 6.458 4 C -0.187 4.187 5 C -0.011 4.011 6 C -0.143 4.143 7 C 0.546 3.454 8 O -0.509 6.509 9 N -0.660 5.660 10 C 0.139 3.861 11 C -0.250 4.250 12 C -0.099 4.099 13 C -0.159 4.159 14 C 0.113 3.887 15 C -0.459 4.459 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.812 5.812 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.198 4.198 24 C -0.052 4.052 25 C -0.142 4.142 26 C -0.006 4.006 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.150 0.850 32 H 0.397 0.603 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.277 0.723 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 14.708 -1.500 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.279 3.721 3 O -0.335 6.335 4 C -0.188 4.188 5 C -0.030 4.030 6 C -0.146 4.146 7 C 0.333 3.667 8 O -0.385 6.385 9 N -0.304 5.304 10 C 0.048 3.952 11 C -0.271 4.271 12 C -0.118 4.118 13 C -0.179 4.179 14 C 0.110 3.890 15 C -0.490 4.490 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.439 5.439 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.219 4.219 24 C -0.071 4.071 25 C -0.160 4.160 26 C -0.007 4.007 27 C -0.180 4.180 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.167 0.833 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.049 15.100 -1.573 18.207 hybrid contribution -0.244 -0.328 0.160 0.438 sum 9.806 14.773 -1.414 17.787 Atomic orbital electron populations 1.22281 0.93465 1.05492 1.05021 1.22424 0.91740 0.87291 0.70660 1.90485 1.71546 1.34496 1.36972 1.20332 0.94029 0.94894 1.09498 1.21670 1.01032 0.89789 0.90481 1.20033 0.93828 0.94027 1.06732 1.18178 0.87356 0.83395 0.77749 1.90841 1.13351 1.86760 1.47515 1.43295 1.09513 1.04945 1.72681 1.17438 0.95011 0.83351 0.99447 1.20120 1.03419 0.94374 1.09162 1.20541 0.96185 0.95408 0.99659 1.21632 0.94762 1.00009 1.01519 1.17569 0.91331 0.89435 0.90671 1.19503 0.98685 1.22668 1.08114 0.90658 1.25853 1.00675 0.93376 0.94527 1.69757 1.33720 1.21035 1.19384 0.86200 0.81159 0.78059 0.80559 1.19535 1.20337 1.18704 1.21226 0.97790 0.97940 1.04982 1.21605 0.93183 0.98743 0.93521 1.21001 1.00396 0.91290 1.03313 1.20405 0.92474 0.96202 0.91604 1.21131 0.99359 0.94057 1.03424 0.89341 0.88594 0.88566 0.83263 0.76802 0.89219 0.88894 0.85332 0.91183 0.86923 0.84966 0.84726 0.90263 0.91911 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.65 10.19 36.00 0.37 -1.28 16 2 C 0.40 4.21 7.15 -30.68 -0.22 3.99 16 3 O -0.46 -5.65 14.09 5.58 0.08 -5.57 16 4 C -0.19 -2.08 5.86 -105.11 -0.62 -2.69 16 5 C -0.01 -0.13 8.97 -38.69 -0.35 -0.48 16 6 C -0.14 -1.90 5.87 -105.03 -0.62 -2.52 16 7 C 0.55 9.63 7.61 -12.34 -0.09 9.54 16 8 O -0.51 -11.13 13.79 5.31 0.07 -11.06 16 9 N -0.66 -11.42 5.28 -10.77 -0.06 -11.48 16 10 C 0.14 3.07 6.28 -83.79 -0.53 2.54 16 11 C -0.25 -5.33 9.97 -39.09 -0.39 -5.72 16 12 C -0.10 -2.26 10.02 -39.69 -0.40 -2.66 16 13 C -0.16 -4.14 8.66 -38.84 -0.34 -4.48 16 14 C 0.11 3.07 5.55 -106.85 -0.59 2.47 16 15 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 16 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 17 C 0.07 1.82 5.41 -17.35 -0.09 1.73 16 18 N -0.81 -21.44 10.61 55.55 0.59 -20.85 16 19 Si 0.92 19.40 29.56 -169.99 -5.02 14.38 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.20 -5.04 8.43 -38.68 -0.33 -5.37 16 24 C -0.05 -0.53 9.54 -39.06 -0.37 -0.90 16 25 C -0.14 -1.29 9.64 -39.71 -0.38 -1.67 16 26 C -0.01 -0.06 5.93 -104.07 -0.62 -0.68 16 27 C -0.12 -1.09 8.68 36.00 0.31 -0.78 16 28 H 0.09 0.69 5.64 -51.93 -0.29 0.40 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.15 1.79 5.57 -52.49 -0.29 1.50 16 32 H 0.40 5.17 6.86 -40.82 -0.28 4.89 16 33 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.13 3.45 6.14 -52.49 -0.32 3.13 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.11 2.95 6.24 -52.49 -0.33 2.62 16 38 H 0.13 1.04 6.40 -52.49 -0.34 0.71 16 39 H 0.13 0.86 8.05 -52.49 -0.42 0.44 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 42 H 0.09 0.92 5.91 -51.93 -0.31 0.61 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -31.88 352.97 -9.27 -41.14 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.66 Total: 9.96 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -5.59 Total: -21.84 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.53 Total: -32.33 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.15 Total: -16.63 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.88 -9.27 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587609448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.741 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds