Wall clock time and date at job start Tue Mar 31 2020 14:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21252 * 120.00290 * 2 1 4 4 C 1.47194 * 120.00279 * 180.02562 * 2 1 3 5 5 C 1.39619 * 120.09586 * 353.78135 * 4 2 1 6 6 C 1.39243 * 119.67306 * 180.02562 * 5 4 2 7 7 C 1.47834 * 120.05998 * 180.02562 * 6 5 4 8 8 O 1.21559 * 119.99852 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.39862 * 119.99988 * 184.53873 * 9 7 6 11 11 C 1.39310 * 119.94840 * 144.75773 * 10 9 7 12 12 C 1.38480 * 120.42667 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32406 * 0.02562 * 12 11 10 14 14 C 1.40741 * 119.89002 * 359.97438 * 13 12 11 15 15 C 1.41410 * 120.20869 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99639 * 145.95388 * 15 14 13 17 17 C 1.39927 * 120.00052 * 325.95505 * 15 14 13 18 18 N 1.30828 * 120.00035 * 2.67325 * 17 15 14 19 19 Si 1.86803 * 119.99812 * 182.67180 * 17 15 14 20 20 H 1.48500 * 109.46904 * 90.00171 * 19 17 15 21 21 H 1.48498 * 109.47198 * 210.00071 * 19 17 15 22 22 H 1.48500 * 109.47327 * 330.00044 * 19 17 15 23 23 C 1.38258 * 119.94995 * 324.48788 * 10 9 7 24 24 C 1.39759 * 119.88216 * 0.02562 * 6 5 4 25 25 C 1.38101 * 120.19440 * 359.97438 * 24 6 5 26 26 C 1.38030 * 120.32927 * 359.75961 * 25 24 6 27 27 C 1.50696 * 119.93964 * 180.25506 * 26 25 24 28 28 H 1.09006 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47139 * 60.00079 * 1 2 3 30 30 H 1.08995 * 109.47064 * 299.99577 * 1 2 3 31 31 H 1.07999 * 120.16221 * 359.97438 * 5 4 2 32 32 H 0.97003 * 119.99952 * 4.53703 * 9 7 6 33 33 H 1.08000 * 119.78528 * 0.02562 * 11 10 9 34 34 H 1.08007 * 119.83697 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.05456 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99675 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.16272 * 359.97438 * 23 10 9 38 38 H 1.07996 * 119.90469 * 180.02562 * 24 6 5 39 39 H 1.07997 * 119.83448 * 180.02562 * 25 24 6 40 40 H 1.09002 * 109.47497 * 262.90527 * 27 26 25 41 41 H 1.08997 * 109.47529 * 22.90846 * 27 26 25 42 42 H 1.09003 * 109.47164 * 142.90785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5531 -2.4815 0.1297 6 6 2.2583 -3.6822 0.1286 7 6 1.5364 -4.9651 0.2655 8 8 0.3262 -4.9723 0.3796 9 7 2.2202 -6.1265 0.2648 10 6 1.5316 -7.3434 0.2986 11 6 2.0299 -8.4439 -0.3952 12 6 1.3564 -9.6536 -0.3682 13 6 0.1857 -9.7817 0.3451 14 6 -0.3298 -8.6786 1.0509 15 6 -1.5320 -8.8025 1.7852 16 1 -1.6626 -8.2505 2.7042 17 6 -2.5521 -9.6403 1.3211 18 7 -2.3737 -10.3490 0.2360 19 14 -4.1687 -9.7468 2.2510 20 1 -5.1095 -8.7242 1.7269 21 1 -4.7559 -11.0987 2.0699 22 1 -3.9260 -9.5020 3.6955 23 6 0.3605 -7.4538 1.0250 24 6 3.6497 -3.6724 -0.0021 25 6 4.3268 -2.4757 -0.1307 26 6 3.6357 -1.2809 -0.1361 27 6 4.3829 0.0195 -0.2827 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5137 0.8900 31 1 0.4780 -2.4837 0.2317 32 1 3.1899 -6.1184 0.2408 33 1 2.9477 -8.3532 -0.9572 34 1 1.7515 -10.5008 -0.9092 35 1 -0.3362 -10.7271 0.3629 36 1 -3.0811 -10.9294 -0.0859 37 1 -0.0242 -6.6026 1.5671 38 1 4.1969 -4.6035 -0.0034 39 1 5.4021 -2.4749 -0.2318 40 1 4.5486 0.4565 0.7021 41 1 5.3431 -0.1653 -0.7643 42 1 3.7976 0.7083 -0.8919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587609448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:33 Heat of formation + Delta-G solvation = -41.012015 kcal Electronic energy + Delta-G solvation = -25529.686121 eV Core-core repulsion = 21824.696281 eV Total energy + Delta-G solvation = -3704.989839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79863 -40.92770 -39.35093 -38.62142 -36.25710 -34.91998 -33.94827 -33.17666 -31.72844 -30.41534 -30.13389 -28.13755 -27.24025 -24.97075 -24.20593 -22.88549 -22.45688 -21.79559 -20.54122 -19.66157 -18.74321 -17.51980 -17.19596 -16.80408 -16.65118 -16.49291 -16.44518 -16.29052 -15.99846 -15.37494 -15.11236 -14.91471 -14.89191 -14.59120 -14.39869 -13.96121 -13.68698 -13.27181 -13.11219 -13.06318 -13.00778 -12.91526 -12.88562 -12.83997 -12.55610 -12.42177 -12.20556 -12.01377 -11.64957 -11.21855 -10.94741 -10.69121 -10.53035 -10.16342 -9.91934 -9.31427 -8.72762 -8.49761 -6.40640 -0.55182 -0.15871 0.91508 1.00181 1.23824 1.36446 1.48822 1.50306 1.88625 2.09470 2.23757 2.70608 2.80597 3.00451 3.50785 3.62985 3.70400 3.83295 3.90844 4.08982 4.25579 4.42112 4.47505 4.52194 4.56916 4.61643 4.64416 4.78520 4.89475 4.98439 5.03514 5.05627 5.12179 5.13658 5.16168 5.20279 5.23717 5.36723 5.44558 5.67679 5.76967 5.84919 6.07739 6.15393 6.36149 6.43945 6.56709 6.71646 6.96523 7.01316 7.22777 8.42370 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.002803 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.755212 B = 9987.636688 C =11394.665436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.399 3.601 3 O -0.478 6.478 4 C -0.197 4.197 5 C -0.017 4.017 6 C -0.163 4.163 7 C 0.546 3.454 8 O -0.562 6.562 9 N -0.649 5.649 10 C 0.146 3.854 11 C -0.235 4.235 12 C -0.098 4.098 13 C -0.185 4.185 14 C 0.081 3.919 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.029 3.971 18 N -0.841 5.841 19 Si 0.986 3.014 20 H -0.268 1.268 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.223 4.223 24 C -0.041 4.041 25 C -0.132 4.132 26 C -0.007 4.007 27 C -0.121 4.121 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.421 0.579 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.284 0.716 37 H 0.092 0.908 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.395 15.498 -2.383 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.280 3.720 3 O -0.357 6.357 4 C -0.198 4.198 5 C -0.036 4.036 6 C -0.166 4.166 7 C 0.335 3.665 8 O -0.441 6.441 9 N -0.295 5.295 10 C 0.053 3.947 11 C -0.255 4.255 12 C -0.117 4.117 13 C -0.205 4.205 14 C 0.078 3.922 15 C -0.533 4.533 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.469 5.469 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.186 1.186 22 H -0.184 1.184 23 C -0.245 4.245 24 C -0.059 4.059 25 C -0.149 4.149 26 C -0.007 4.007 27 C -0.177 4.177 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.260 0.740 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.179 0.821 39 H 0.191 0.809 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.763 15.897 -2.464 20.535 hybrid contribution -0.870 -0.441 0.366 1.041 sum 11.893 15.456 -2.099 19.615 Atomic orbital electron populations 1.22308 0.91890 1.05766 1.06148 1.22682 0.92677 0.86821 0.69800 1.90482 1.72093 1.34937 1.38166 1.20436 0.94865 0.94500 1.10023 1.21656 1.00929 0.90203 0.90772 1.19722 0.95171 0.91673 1.10060 1.18865 0.86959 0.84632 0.76007 1.90822 1.15919 1.87561 1.49762 1.43139 1.10599 1.03397 1.72349 1.17505 0.94007 0.85435 0.97713 1.20573 1.04267 0.93028 1.07676 1.20910 0.94930 0.97242 0.98587 1.21576 0.96456 0.99109 1.03398 1.17892 0.92009 0.90571 0.91724 1.19713 1.00273 1.24550 1.08726 0.91731 1.26694 1.03801 0.92509 0.95313 1.69824 1.35018 1.21542 1.20473 0.85149 0.76416 0.78635 0.79100 1.19344 1.18604 1.18381 1.21184 0.99787 0.96872 1.06630 1.21881 0.91598 1.00629 0.91809 1.21382 1.02116 0.89973 1.01460 1.20780 0.92166 0.97551 0.90240 1.21134 1.00172 0.92941 1.03456 0.89509 0.87293 0.87465 0.84096 0.73961 0.84565 0.85723 0.87062 0.90509 0.88990 0.82145 0.80927 0.90171 0.89239 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.22 10.19 71.23 0.73 -2.49 16 2 C 0.40 8.19 7.15 28.04 0.20 8.39 16 3 O -0.48 -11.46 14.09 -2.94 -0.04 -11.50 16 4 C -0.20 -4.18 5.86 -20.18 -0.12 -4.30 16 5 C -0.02 -0.41 8.97 22.85 0.20 -0.20 16 6 C -0.16 -4.15 5.87 -20.13 -0.12 -4.27 16 7 C 0.55 19.23 7.61 86.78 0.66 19.89 16 8 O -0.56 -25.74 13.79 -3.90 -0.05 -25.79 16 9 N -0.65 -21.43 5.28 -306.25 -1.62 -23.05 16 10 C 0.15 6.37 6.28 38.12 0.24 6.61 16 11 C -0.23 -9.42 9.97 22.59 0.23 -9.20 16 12 C -0.10 -4.36 10.02 22.20 0.22 -4.14 16 13 C -0.19 -9.91 8.66 22.75 0.20 -9.71 16 14 C 0.08 4.61 5.55 -21.31 -0.12 4.49 16 15 C -0.50 -29.11 9.05 23.46 0.21 -28.90 16 16 H 0.06 3.69 7.85 -2.91 -0.02 3.67 16 17 C 0.03 1.53 5.41 85.25 0.46 1.99 16 18 N -0.84 -46.01 10.61 21.82 0.23 -45.78 16 19 Si 0.99 41.06 29.56 68.60 2.03 43.08 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 23 C -0.22 -11.86 8.43 22.85 0.19 -11.67 16 24 C -0.04 -0.69 9.54 22.61 0.22 -0.47 16 25 C -0.13 -1.83 9.64 22.19 0.21 -1.62 16 26 C -0.01 -0.12 5.93 -19.50 -0.12 -0.24 16 27 C -0.12 -1.80 8.68 71.23 0.62 -1.18 16 28 H 0.09 1.40 5.64 -2.38 -0.01 1.39 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.14 3.58 5.57 -2.91 -0.02 3.57 16 32 H 0.42 9.50 6.86 -92.71 -0.64 8.86 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 35 H 0.11 6.25 6.14 -2.91 -0.02 6.23 16 36 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 37 H 0.09 5.17 6.24 -2.91 -0.02 5.15 16 38 H 0.16 1.73 6.40 -2.91 -0.02 1.71 16 39 H 0.17 1.14 8.05 -2.91 -0.02 1.12 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 0.85 8.03 -2.39 -0.02 0.83 16 42 H 0.08 1.43 5.91 -2.39 -0.01 1.41 16 Total: -1.00 -74.57 352.97 5.11 -69.45 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.45 Total: 30.59 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.12 Total: -37.01 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.38 Total: -68.83 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.10 Total: -37.29 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -74.57 5.11 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587609448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.440 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds