Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48495 * 109.46751 * 269.99918 * 3 2 1 5 5 H 1.48506 * 109.47161 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47122 * 149.99548 * 3 2 1 7 7 C 1.40025 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.41316 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78616 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14360 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68292 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49317 * 359.97438 * 12 11 10 14 14 N 1.38823 * 119.58615 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99732 * 0.02562 * 14 13 12 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 13 17 17 C 1.38304 * 119.49117 * 94.72357 * 16 15 14 18 18 C 1.38427 * 119.27817 * 179.76898 * 17 16 15 19 19 C 1.39724 * 118.31638 * 0.49694 * 18 17 16 20 20 C 1.48460 * 120.53620 * 179.72516 * 19 18 17 21 21 N 1.34049 * 126.67094 * 359.71004 * 20 19 18 22 22 N 1.28992 * 107.27009 * 179.89274 * 21 20 19 23 23 N 1.28730 * 108.93891 * 0.37482 * 22 21 20 24 24 H 0.97002 * 125.34380 * 179.74340 * 23 22 21 25 25 N 1.28874 * 109.32113 * 359.75908 * 23 22 21 26 26 C 1.39267 * 118.93101 * 359.74785 * 19 18 17 27 27 N 1.31744 * 120.60574 * 359.97438 * 26 19 18 28 28 N 1.31983 * 120.83163 * 0.25612 * 13 12 11 29 29 H 0.97001 * 119.99443 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.42278 * 0.03035 * 10 9 7 31 31 H 1.07997 * 120.65065 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25102 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00661 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.47068 * 299.99792 * 15 14 13 35 35 H 1.09001 * 109.47372 * 59.99880 * 15 14 13 36 36 H 1.08003 * 120.36147 * 0.02609 * 17 16 15 37 37 H 1.08005 * 120.84058 * 180.24546 * 18 17 16 38 38 H 1.08003 * 119.69414 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6528 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0084 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0022 12 6 -0.0823 -4.7944 0.0022 13 6 -0.7283 -3.5551 0.0021 14 7 -2.1156 -3.5054 0.0016 15 6 -2.8931 -4.7471 0.0016 16 6 -4.3639 -4.4189 0.0016 17 6 -5.0500 -4.3674 -1.1982 18 6 -6.4020 -4.0702 -1.1927 19 6 -7.0211 -3.8221 0.0351 20 6 -8.4673 -3.4927 0.0977 21 7 -9.3108 -3.3908 -0.9391 22 7 -10.4712 -3.0929 -0.4609 23 7 -10.3835 -2.9982 0.8199 24 1 -11.1156 -2.7803 1.4179 25 7 -9.1705 -3.2380 1.1831 26 6 -6.2594 -3.8882 1.1992 27 7 -4.9759 -4.1804 1.1453 28 7 -0.0361 -2.4314 -0.0029 29 1 -0.4849 0.8401 -0.0004 30 1 3.0884 -3.6554 0.0013 31 1 1.8220 -5.7890 0.0018 32 1 -0.6579 -5.7081 0.0030 33 1 -2.5703 -2.6486 0.0019 34 1 -2.6500 -5.3280 -0.8882 35 1 -2.6507 -5.3276 0.8918 36 1 -4.5375 -4.5610 -2.1289 37 1 -6.9632 -4.0272 -2.1145 38 1 -6.7255 -3.6990 2.1549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592679992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 205.271622 kcal Electronic energy + Delta-G solvation = -24641.081087 eV Core-core repulsion = 20907.816066 eV Total energy + Delta-G solvation = -3733.265021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.81377 -40.46036 -38.19839 -35.57884 -34.73521 -34.03502 -33.22290 -32.50247 -31.38338 -30.28598 -28.87568 -26.39966 -25.30931 -25.28874 -23.98588 -23.18043 -21.92814 -21.34347 -20.33460 -19.58410 -17.50127 -17.38795 -17.12824 -16.75012 -16.45604 -15.55175 -14.93549 -14.71990 -14.41422 -14.32803 -13.93600 -13.77239 -13.49915 -13.13175 -13.08796 -12.82155 -12.64683 -12.08256 -11.91440 -11.79013 -11.65887 -11.49810 -11.45699 -11.16689 -10.95810 -10.60071 -10.42257 -9.97978 -9.90911 -9.66970 -9.47483 -9.05632 -8.87591 -7.88220 -7.47899 -6.50761 -6.29461 -4.44194 0.25567 0.80818 1.06466 1.86954 1.99180 2.90459 3.13536 3.16763 3.26685 3.27499 3.32763 3.51784 3.79613 4.01143 4.10136 4.40906 4.59031 4.63410 4.86650 4.87447 4.92152 5.07595 5.25987 5.52088 5.63874 5.82025 5.88985 6.00093 6.00385 6.14245 6.18287 6.38080 6.59359 6.87670 6.91612 6.95526 7.27746 7.61431 7.75677 7.79145 7.83235 7.93934 8.18855 8.37360 8.68261 8.83123 9.14100 10.27510 10.43463 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002485 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.238707 B =11265.024900 C =12561.510792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.031 4.031 12 C -0.367 4.367 13 C 0.414 3.586 14 N -0.732 5.732 15 C 0.189 3.811 16 C 0.142 3.858 17 C -0.153 4.153 18 C -0.032 4.032 19 C -0.078 4.078 20 C 0.228 3.772 21 N -0.268 5.268 22 N -0.048 5.048 23 N -0.226 5.226 24 H 0.476 0.524 25 N -0.291 5.291 26 C 0.145 3.855 27 N -0.464 5.464 28 N -0.531 5.531 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.295 -5.853 0.329 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.393 4.393 13 C 0.174 3.826 14 N -0.369 5.369 15 C 0.063 3.937 16 C 0.004 3.996 17 C -0.174 4.174 18 C -0.060 4.060 19 C -0.084 4.084 20 C -0.053 4.053 21 N -0.141 5.141 22 N -0.043 5.043 23 N -0.072 5.072 24 H 0.331 0.669 25 N -0.143 5.143 26 C -0.016 4.016 27 N -0.172 5.172 28 N -0.252 5.252 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.026 -5.051 0.840 20.670 hybrid contribution -0.075 0.359 -0.161 0.401 sum -20.102 -4.692 0.679 20.653 Atomic orbital electron populations 1.70153 1.07120 1.27288 1.29101 1.26049 0.94850 1.00890 0.93609 0.86388 0.80516 0.81120 0.79098 1.19531 1.20292 1.18603 1.19577 0.94141 0.89379 1.43503 0.89894 1.18199 0.86833 0.91866 0.86558 1.21540 0.98422 0.93479 1.20420 1.20591 0.93426 0.96372 0.95195 1.20592 0.94650 0.95391 1.28690 1.18436 0.83820 0.90356 0.89981 1.43929 1.02686 1.06054 1.84264 1.19925 0.82815 0.88593 1.02354 1.21650 0.96942 0.92675 0.88310 1.22053 0.94163 1.01198 0.99968 1.21625 0.94407 0.92628 0.97356 1.18284 0.86691 1.07201 0.96200 1.23459 0.96325 1.01031 0.84451 1.76096 0.95297 1.16891 1.25806 1.78923 1.18121 1.14228 0.93059 1.47735 1.08779 1.44021 1.06689 0.66920 1.74943 0.92359 1.20363 1.26602 1.22901 0.88917 0.92394 0.97404 1.67685 1.09462 1.10895 1.29156 1.68186 1.07671 1.24340 1.25000 0.91982 0.88711 0.88900 0.89108 0.76867 0.91016 0.90866 0.83389 0.83394 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.21 11.46 55.55 0.64 -18.58 16 2 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 3 Si 0.90 18.91 29.56 -169.99 -5.02 13.89 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.43 -11.83 9.14 -37.74 -0.34 -12.17 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.29 8.19 6.55 -85.00 -0.56 7.63 16 10 C -0.32 -8.00 9.83 -38.65 -0.38 -8.38 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.37 -8.36 9.34 -38.87 -0.36 -8.73 16 13 C 0.41 10.07 7.65 -155.32 -1.19 8.88 16 14 N -0.73 -14.69 5.71 -61.57 -0.35 -15.04 16 15 C 0.19 2.92 5.18 -5.19 -0.03 2.90 16 16 C 0.14 1.94 6.15 -82.54 -0.51 1.43 16 17 C -0.15 -1.72 9.71 -39.49 -0.38 -2.10 16 18 C -0.03 -0.34 9.84 -38.96 -0.38 -0.72 16 19 C -0.08 -0.87 5.89 -104.75 -0.62 -1.49 16 20 C 0.23 2.47 7.95 -156.30 -1.24 1.23 16 21 N -0.27 -3.00 12.31 32.16 0.40 -2.61 16 22 N -0.05 -0.45 13.47 60.35 0.81 0.37 16 23 N -0.23 -1.49 7.90 60.35 0.48 -1.01 16 24 H 0.48 0.78 8.96 -340.37 -3.05 -2.27 16 25 N -0.29 -2.69 12.11 32.17 0.39 -2.30 16 26 C 0.14 1.72 10.87 -17.21 -0.19 1.53 16 27 N -0.46 -6.58 10.26 -9.21 -0.09 -6.67 16 28 N -0.53 -14.73 7.89 -10.33 -0.08 -14.81 16 29 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 30 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 32 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 33 H 0.40 8.24 8.58 -40.82 -0.35 7.89 16 34 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 35 H 0.07 1.17 7.92 -51.93 -0.41 0.75 16 36 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 37 H 0.15 1.29 7.97 -52.48 -0.42 0.87 16 38 H 0.17 1.66 7.90 -52.48 -0.41 1.25 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -33.19 341.86 -10.58 -43.77 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.22 Total: 7.22 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -6.68 Total: -9.37 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 2.18 Total: -60.65 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.19 -10.58 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592679992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.045 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds