Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 120.00262 * 2 1 4 4 H 1.48495 * 109.46751 * 269.99918 * 3 2 1 5 5 H 1.48506 * 109.47161 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47122 * 149.99548 * 3 2 1 7 7 C 1.40025 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.41316 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78616 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14360 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68292 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49317 * 359.97438 * 12 11 10 14 14 N 1.38823 * 119.58615 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99732 * 0.02562 * 14 13 12 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 13 17 17 C 1.38304 * 119.49117 * 94.72357 * 16 15 14 18 18 C 1.38427 * 119.27817 * 179.76898 * 17 16 15 19 19 C 1.39724 * 118.31638 * 0.49694 * 18 17 16 20 20 C 1.48460 * 120.53620 * 179.72516 * 19 18 17 21 21 N 1.34049 * 126.67094 * 359.71004 * 20 19 18 22 22 N 1.28992 * 107.27009 * 179.89274 * 21 20 19 23 23 N 1.28730 * 108.93891 * 0.37482 * 22 21 20 24 24 H 0.97002 * 125.34380 * 179.74340 * 23 22 21 25 25 N 1.28874 * 109.32113 * 359.75908 * 23 22 21 26 26 C 1.39267 * 118.93101 * 359.74785 * 19 18 17 27 27 N 1.31744 * 120.60574 * 359.97438 * 26 19 18 28 28 N 1.31983 * 120.83163 * 0.25612 * 13 12 11 29 29 H 0.97001 * 119.99443 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.42278 * 0.03035 * 10 9 7 31 31 H 1.07997 * 120.65065 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25102 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00661 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.47068 * 299.99792 * 15 14 13 35 35 H 1.09001 * 109.47372 * 59.99880 * 15 14 13 36 36 H 1.08003 * 120.36147 * 0.02609 * 17 16 15 37 37 H 1.08005 * 120.84058 * 180.24546 * 18 17 16 38 38 H 1.08003 * 119.69414 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6528 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3009 -2.4365 0.0016 10 6 2.0084 -3.6514 0.0016 11 6 1.3033 -4.8418 0.0022 12 6 -0.0823 -4.7944 0.0022 13 6 -0.7283 -3.5551 0.0021 14 7 -2.1156 -3.5054 0.0016 15 6 -2.8931 -4.7471 0.0016 16 6 -4.3639 -4.4189 0.0016 17 6 -5.0500 -4.3674 -1.1982 18 6 -6.4020 -4.0702 -1.1927 19 6 -7.0211 -3.8221 0.0351 20 6 -8.4673 -3.4927 0.0977 21 7 -9.3108 -3.3908 -0.9391 22 7 -10.4712 -3.0929 -0.4609 23 7 -10.3835 -2.9982 0.8199 24 1 -11.1156 -2.7803 1.4179 25 7 -9.1705 -3.2380 1.1831 26 6 -6.2594 -3.8882 1.1992 27 7 -4.9759 -4.1804 1.1453 28 7 -0.0361 -2.4314 -0.0029 29 1 -0.4849 0.8401 -0.0004 30 1 3.0884 -3.6554 0.0013 31 1 1.8220 -5.7890 0.0018 32 1 -0.6579 -5.7081 0.0030 33 1 -2.5703 -2.6486 0.0019 34 1 -2.6500 -5.3280 -0.8882 35 1 -2.6507 -5.3276 0.8918 36 1 -4.5375 -4.5610 -2.1289 37 1 -6.9632 -4.0272 -2.1145 38 1 -6.7255 -3.6990 2.1549 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592679992.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = 182.613702 kcal Electronic energy + Delta-G solvation = -24642.063608 eV Core-core repulsion = 20907.816066 eV Total energy + Delta-G solvation = -3734.247542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.54023 -41.41600 -40.02477 -36.96690 -35.67345 -35.19605 -34.73134 -33.39781 -32.64069 -32.06855 -30.50266 -27.68872 -27.16176 -26.06266 -24.92274 -24.09836 -23.36758 -22.76394 -22.05539 -20.28001 -19.25662 -18.39077 -18.21623 -17.77568 -17.55675 -16.92478 -16.50239 -16.26950 -15.94817 -15.27464 -15.25398 -14.98568 -14.82182 -14.60683 -14.40819 -14.05121 -13.65436 -13.58238 -13.39993 -12.90079 -12.82481 -12.69807 -12.55089 -12.52955 -12.31835 -12.24508 -12.15246 -11.71966 -11.28834 -10.85702 -10.67716 -10.59050 -9.96460 -9.79864 -9.40774 -8.28078 -8.19810 -6.44457 -0.62229 0.07762 0.18970 1.09479 1.13684 1.35075 1.39134 1.42457 1.55606 1.60481 2.26594 2.43435 2.51398 2.95563 2.97439 3.02685 3.18619 3.61939 3.78397 4.02536 4.05775 4.10690 4.22715 4.40477 4.43767 4.57734 4.67663 4.70180 4.84685 4.97542 5.02980 5.04958 5.07508 5.14593 5.38472 5.48266 5.55571 5.75140 6.00896 6.09750 6.25204 6.56669 6.82170 6.85184 6.94558 7.03487 7.23180 8.37632 8.54117 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.002485 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.238707 B =11265.024900 C =12561.510792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.029 4.029 12 C -0.363 4.363 13 C 0.397 3.603 14 N -0.727 5.727 15 C 0.190 3.810 16 C 0.124 3.876 17 C -0.145 4.145 18 C -0.029 4.029 19 C -0.073 4.073 20 C 0.215 3.785 21 N -0.288 5.288 22 N -0.053 5.053 23 N -0.197 5.197 24 H 0.496 0.504 25 N -0.291 5.291 26 C 0.138 3.862 27 N -0.491 5.491 28 N -0.566 5.566 29 H 0.274 0.726 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.390 0.610 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 -6.230 0.027 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.366 4.366 11 C -0.053 4.053 12 C -0.389 4.389 13 C 0.156 3.844 14 N -0.362 5.362 15 C 0.066 3.934 16 C -0.014 4.014 17 C -0.165 4.165 18 C -0.056 4.056 19 C -0.078 4.078 20 C -0.066 4.066 21 N -0.160 5.160 22 N -0.048 5.048 23 N -0.048 5.048 24 H 0.355 0.645 25 N -0.144 5.144 26 C -0.023 4.023 27 N -0.200 5.200 28 N -0.289 5.289 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.223 0.777 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -21.393 -5.470 0.542 22.088 hybrid contribution 0.107 0.352 -0.016 0.368 sum -21.286 -5.118 0.526 21.899 Atomic orbital electron populations 1.70261 1.08746 1.28499 1.29955 1.26950 0.95721 1.04336 0.92587 0.85183 0.79007 0.75958 0.79338 1.18775 1.19510 1.18019 1.19924 0.94577 0.90494 1.45375 0.89571 1.18677 0.87610 0.93247 0.87337 1.21700 0.99002 0.93799 1.22101 1.21022 0.93747 0.97167 0.93398 1.20972 0.94990 0.96039 1.26901 1.18884 0.85428 0.90424 0.89633 1.44097 1.01468 1.07498 1.83175 1.20069 0.83696 0.86710 1.02944 1.21418 0.96042 0.94709 0.89188 1.22204 0.94423 1.00085 0.99785 1.21852 0.94158 0.91698 0.97903 1.18365 0.87035 1.06189 0.96236 1.23402 0.96295 1.02049 0.84846 1.76075 0.95789 1.17780 1.26404 1.78873 1.17549 1.14457 0.93874 1.47801 1.08692 1.41904 1.06414 0.64473 1.74913 0.93055 1.20089 1.26294 1.23058 0.88327 0.92514 0.98351 1.67587 1.10646 1.11831 1.29932 1.68150 1.08023 1.26286 1.26413 0.91531 0.87991 0.85114 0.85856 0.77655 0.88977 0.91389 0.81453 0.81487 0.80585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.62 11.46 21.84 0.25 -41.37 16 2 C 0.03 1.35 5.50 85.29 0.47 1.82 16 3 Si 0.98 39.41 29.56 68.60 2.03 41.43 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.47 -26.57 9.14 23.46 0.21 -26.36 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.26 14.94 6.55 40.19 0.26 15.20 16 10 C -0.34 -17.62 9.83 22.87 0.22 -17.39 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.36 -16.11 9.34 22.73 0.21 -15.90 16 13 C 0.40 19.44 7.65 133.40 1.02 20.46 16 14 N -0.73 -29.27 5.71 -348.71 -1.99 -31.26 16 15 C 0.19 5.70 5.18 85.63 0.44 6.14 16 16 C 0.12 3.27 6.15 42.57 0.26 3.53 16 17 C -0.14 -3.01 9.71 22.33 0.22 -2.79 16 18 C -0.03 -0.55 9.84 22.67 0.22 -0.32 16 19 C -0.07 -1.53 5.89 -19.95 -0.12 -1.65 16 20 C 0.21 4.33 7.95 137.38 1.09 5.42 16 21 N -0.29 -6.00 12.31 -52.18 -0.64 -6.64 16 22 N -0.05 -0.88 13.47 37.02 0.50 -0.38 16 23 N -0.20 -2.18 7.90 37.02 0.29 -1.89 16 24 H 0.50 0.42 8.96 -347.53 -3.12 -2.69 16 25 N -0.29 -4.84 12.11 -52.13 -0.63 -5.48 16 26 C 0.14 3.19 10.87 84.95 0.92 4.11 16 27 N -0.49 -13.76 10.26 -183.04 -1.88 -15.63 16 28 N -0.57 -32.34 7.89 -186.59 -1.47 -33.81 16 29 H 0.27 13.78 8.29 -92.71 -0.77 13.01 16 30 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.12 4.57 6.68 -2.91 -0.02 4.55 16 33 H 0.39 16.57 8.58 -92.71 -0.80 15.77 16 34 H 0.09 2.37 7.82 -2.39 -0.02 2.35 16 35 H 0.07 2.11 7.92 -2.39 -0.02 2.09 16 36 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.17 2.54 7.97 -2.91 -0.02 2.52 16 38 H 0.18 3.44 7.90 -2.91 -0.02 3.42 16 Total: -1.00 -73.60 341.86 -0.63 -74.23 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -2.76 Total: 29.60 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.67 Total: -8.81 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -5.57 Total: -136.46 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Total: -73.60 -0.63 -74.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592679992.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.846 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds