Wall clock time and date at job start Tue Mar 31 2020 13:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99972 * 2 1 4 4 H 1.48505 * 109.47152 * 269.99857 * 3 2 1 5 5 H 1.48503 * 109.47316 * 29.99770 * 3 2 1 6 6 H 1.48499 * 109.47507 * 150.00009 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99657 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47556 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47631 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47450 * 179.97438 * 11 10 9 13 13 O 1.21273 * 120.00193 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99675 * 180.02562 * 12 11 10 15 15 C 1.39156 * 119.99746 * 180.02562 * 14 12 11 16 16 N 1.33986 * 126.26765 * 359.97438 * 15 14 12 17 17 C 1.30231 * 109.87578 * 179.97438 * 16 15 14 18 18 N 1.35186 * 109.40088 * 0.04876 * 17 16 15 19 19 C 1.37826 * 107.51172 * 359.93996 * 18 17 16 20 20 C 1.41602 * 127.12104 * 180.02562 * 19 18 17 21 21 O 1.21701 * 119.99662 * 180.02562 * 20 19 18 22 22 O 1.34965 * 120.00495 * 359.97438 * 20 19 18 23 23 C 1.46525 * 123.75249 * 179.97438 * 18 17 16 24 24 C 1.53461 * 108.13473 * 343.76476 * 23 18 17 25 25 O 1.43042 * 109.56263 * 48.13901 * 24 23 18 26 26 C 1.43427 * 114.04165 * 289.95397 * 25 24 23 27 27 H 0.97002 * 120.00254 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47117 * 59.99805 * 9 7 2 29 29 H 1.09000 * 109.47154 * 300.00068 * 9 7 2 30 30 H 1.09007 * 109.47114 * 60.00423 * 10 9 7 31 31 H 1.09000 * 109.47586 * 300.00128 * 10 9 7 32 32 H 1.09007 * 109.46271 * 60.00219 * 11 10 9 33 33 H 1.09000 * 109.46994 * 300.00802 * 11 10 9 34 34 H 0.97002 * 120.00420 * 0.02562 * 14 12 11 35 35 H 0.96695 * 114.00297 * 179.97438 * 22 20 19 36 36 H 1.08996 * 109.72686 * 224.10461 * 23 18 17 37 37 H 1.09003 * 109.76421 * 103.44900 * 23 18 17 38 38 H 1.09002 * 109.45248 * 168.16301 * 24 23 18 39 39 H 1.09000 * 109.45288 * 288.11966 * 24 23 18 40 40 H 1.09000 * 109.83807 * 290.18636 * 26 25 24 41 41 H 1.08999 * 109.79580 * 169.37939 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6519 -5.9109 0.0001 14 7 2.0103 -7.4032 0.0004 15 6 2.9146 -8.4609 0.0004 16 7 4.2507 -8.3613 0.0000 17 6 4.7833 -9.5498 0.0006 18 7 3.8033 -10.4810 0.0004 19 6 2.5972 -9.8138 0.0010 20 6 1.3029 -10.3881 0.0015 21 8 0.3193 -9.6715 0.0015 22 8 1.1600 -11.7302 0.0010 23 6 4.0523 -11.9249 0.0004 24 6 5.5134 -12.1576 -0.4070 25 8 6.3654 -11.2945 0.3514 26 6 6.2522 -9.9079 0.0028 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8906 31 1 2.8719 -3.6043 -0.8894 32 1 0.8534 -5.0450 -0.8887 33 1 0.8539 -5.0445 0.8913 34 1 1.0566 -7.5804 0.0004 35 1 0.2400 -12.0278 0.0018 36 1 3.3889 -12.4126 -0.7138 37 1 3.8796 -12.3287 0.9981 38 1 5.7833 -13.1958 -0.2135 39 1 5.6326 -11.9435 -1.4691 40 1 6.6744 -9.7399 -0.9880 41 1 6.7795 -9.2985 0.7366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:57 Heat of formation + Delta-G solvation = -110.117256 kcal Electronic energy + Delta-G solvation = -26814.589320 eV Core-core repulsion = 22695.753589 eV Total energy + Delta-G solvation = -4118.835731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.98321 -40.30627 -39.71333 -38.63156 -36.56196 -35.11325 -34.15798 -34.11722 -32.01453 -30.86492 -30.35411 -27.99531 -26.95181 -24.75214 -24.31844 -23.34176 -21.42278 -20.95588 -20.08070 -19.48164 -18.55665 -18.10938 -17.52115 -16.98135 -16.89989 -16.49001 -16.07455 -15.87851 -15.75256 -15.46435 -15.10100 -14.76882 -14.39360 -14.18782 -13.96046 -13.69703 -13.55298 -13.20073 -12.50151 -12.24665 -12.00964 -11.89087 -11.79712 -11.38768 -11.25546 -10.89055 -10.81349 -10.76058 -10.60940 -10.52025 -10.46187 -9.79888 -9.62785 -9.61556 -9.25436 -8.99225 -8.28240 -8.20901 -5.93767 -3.95015 0.52817 1.89408 2.25236 2.54594 2.73728 2.90854 3.01805 3.24276 3.37983 3.43598 3.48649 3.63668 3.80296 4.14785 4.29562 4.51881 4.53049 4.72474 4.78026 4.96535 4.99446 5.06834 5.15103 5.41694 5.42331 5.58119 5.72373 5.72608 5.94278 6.09688 6.26371 6.42629 6.58038 6.75388 6.95153 7.08608 7.19577 7.43782 7.71766 7.75361 7.87825 8.06957 8.35322 8.50824 9.12059 9.68723 11.17777 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002398 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.325644 B =11675.902137 C =12915.913130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.135 4.135 12 C 0.504 3.496 13 O -0.474 6.474 14 N -0.640 5.640 15 C 0.374 3.626 16 N -0.463 5.463 17 C 0.237 3.763 18 N -0.434 5.434 19 C -0.142 4.142 20 C 0.564 3.436 21 O -0.518 6.518 22 O -0.513 6.513 23 C 0.076 3.924 24 C 0.044 3.956 25 O -0.368 6.368 26 C 0.145 3.855 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.428 0.572 35 H 0.413 0.587 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -32.610 -1.200 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.175 4.175 12 C 0.291 3.709 13 O -0.343 6.343 14 N -0.291 5.291 15 C 0.142 3.858 16 N -0.188 5.188 17 C -0.027 4.027 18 N -0.122 5.122 19 C -0.255 4.255 20 C 0.412 3.588 21 O -0.408 6.408 22 O -0.324 6.324 23 C -0.046 4.046 24 C -0.033 4.033 25 O -0.285 6.285 26 C 0.067 3.933 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.269 0.731 35 H 0.271 0.729 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.268 -31.450 -1.051 32.536 hybrid contribution -1.534 -0.118 -0.182 1.550 sum 6.733 -31.569 -1.233 32.302 Atomic orbital electron populations 1.69961 1.06032 1.26515 1.51231 1.25020 0.94854 0.99246 0.95430 0.86590 0.79901 0.83431 0.78075 1.20699 1.21296 1.19829 1.21268 0.93205 0.90975 1.50091 0.92536 1.19132 0.93956 0.91362 0.97245 1.21481 0.98709 0.91224 1.01906 1.21894 0.97944 0.93258 1.04367 1.21719 0.91138 0.82793 0.75200 1.90778 1.16682 1.83480 1.43332 1.43580 1.09627 1.03762 1.72130 1.18047 0.88170 0.84762 0.94866 1.70110 1.04882 1.21017 1.22835 1.24369 0.94490 0.83582 1.00258 1.45057 1.04796 1.07777 1.54521 1.18016 0.84680 0.91022 1.31765 1.17664 0.87393 0.80566 0.73192 1.90942 1.39227 1.61939 1.48708 1.84995 1.37150 1.23523 1.86754 1.22812 0.98994 0.77395 1.05376 1.23100 0.87151 0.96690 0.96394 1.88204 1.62182 1.16183 1.61928 1.21495 0.85217 0.82194 1.04440 0.93086 0.96516 0.96491 0.92495 0.92500 0.88810 0.88789 0.73084 0.72921 0.87237 0.88340 0.85796 0.91209 0.88575 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C -0.13 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.50 8.96 7.79 -10.99 -0.09 8.87 16 13 O -0.47 -10.07 14.69 5.56 0.08 -9.99 16 14 N -0.64 -9.76 5.38 -11.15 -0.06 -9.82 16 15 C 0.37 5.71 7.66 -153.56 -1.18 4.53 16 16 N -0.46 -7.26 9.41 -9.16 -0.09 -7.35 16 17 C 0.24 2.72 7.77 -155.27 -1.21 1.52 16 18 N -0.43 -4.34 3.18 -110.57 -0.35 -4.69 16 19 C -0.14 -1.75 6.84 -83.62 -0.57 -2.32 16 20 C 0.56 6.02 8.08 32.01 0.26 6.27 16 21 O -0.52 -6.58 15.79 -19.42 -0.31 -6.89 16 22 O -0.51 -3.29 11.73 -41.22 -0.48 -3.78 16 23 C 0.08 0.42 6.37 -3.79 -0.02 0.39 16 24 C 0.04 0.17 6.83 37.40 0.26 0.43 16 25 O -0.37 -2.49 10.78 -35.23 -0.38 -2.87 16 26 C 0.14 1.09 7.29 36.25 0.26 1.35 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.43 5.72 6.86 -40.82 -0.28 5.44 16 35 H 0.41 0.94 8.98 45.56 0.41 1.35 16 36 H 0.11 0.45 7.35 -51.93 -0.38 0.07 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.12 0.15 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -38.75 352.08 -8.11 -46.86 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.44 Total: -0.14 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -3.11 Total: 2.77 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.24 Total: -48.56 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.09 Total: -23.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.75 -8.11 -46.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.256 kcal (2) G-P(sol) polarization free energy of solvation -38.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds