Wall clock time and date at job start Tue Mar 31 2020 14:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37987 * 119.49803 * 2 1 4 4 C 1.40011 * 119.16434 * 179.97438 * 3 2 1 5 5 C 1.48072 * 120.88203 * 179.97438 * 4 3 2 6 6 O 1.21436 * 119.99382 * 179.97438 * 5 4 3 7 7 O 1.34658 * 120.00187 * 0.02562 * 5 4 3 8 8 C 1.39580 * 118.23175 * 0.02562 * 4 3 2 9 9 N 1.48023 * 120.53851 * 180.02562 * 8 4 3 10 10 O 1.21796 * 119.99559 * 269.99707 * 9 8 4 11 11 O 1.21798 * 120.00015 * 90.00130 * 9 8 4 12 12 C 1.39081 * 118.92477 * 359.97438 * 8 4 3 13 13 N 1.39024 * 119.64134 * 180.27685 * 12 8 4 14 14 C 1.46503 * 120.00092 * 179.72730 * 13 12 8 15 15 C 1.53004 * 109.47200 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46872 * 299.99722 * 15 14 13 17 17 C 1.52997 * 109.47337 * 59.99974 * 15 14 13 18 18 C 1.50703 * 109.46828 * 179.97438 * 15 14 13 19 19 H 1.07993 * 120.00208 * 0.02562 * 18 15 14 20 20 C 1.37874 * 119.99475 * 179.97438 * 18 15 14 21 21 N 1.31518 * 120.00486 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99697 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47427 * 60.00114 * 22 20 18 24 24 H 1.48500 * 109.47115 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47374 * 300.00063 * 22 20 18 26 26 N 1.31884 * 119.49389 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47283 * 270.02179 * 1 2 3 28 28 H 1.09003 * 109.46940 * 30.02411 * 1 2 3 29 29 H 1.09006 * 109.47047 * 150.02387 * 1 2 3 30 30 H 1.07998 * 120.41410 * 359.97438 * 3 2 1 31 31 H 0.96708 * 117.00119 * 179.97438 * 7 5 4 32 32 H 0.97001 * 120.00535 * 359.73190 * 13 12 8 33 33 H 1.09002 * 109.46864 * 299.99852 * 14 13 12 34 34 H 1.08995 * 109.47064 * 59.99817 * 14 13 12 35 35 H 1.09002 * 109.47173 * 60.00059 * 16 15 14 36 36 H 1.09001 * 109.47089 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.47446 * 300.00287 * 16 15 14 38 38 H 1.09002 * 109.47457 * 59.99963 * 17 15 14 39 39 H 1.08994 * 109.47295 * 179.97438 * 17 15 14 40 40 H 1.09002 * 109.46831 * 300.00017 * 17 15 14 41 41 H 0.97000 * 119.99960 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1865 1.2010 0.0000 4 6 3.5866 1.1928 0.0005 5 6 4.3540 2.4592 0.0000 6 8 5.5681 2.4333 0.0010 7 8 3.7056 3.6394 -0.0005 8 6 4.2397 -0.0407 0.0005 9 7 5.7184 -0.1089 0.0017 10 8 6.3274 -0.1366 -1.0527 11 8 6.3259 -0.1375 1.0569 12 6 3.4786 -1.2048 0.0005 13 7 4.1137 -2.4415 0.0063 14 6 3.3197 -3.6727 0.0124 15 6 4.2555 -4.8831 0.0187 16 6 5.1382 -4.8517 -1.2306 17 6 5.1378 -4.8392 1.2678 18 6 3.4387 -6.1496 0.0255 19 1 2.3600 -6.0965 0.0250 20 6 4.0685 -7.3760 0.0314 21 7 5.3821 -7.4408 0.0315 22 14 3.0561 -8.9458 0.0392 23 1 2.1993 -8.9884 -1.1730 24 1 3.9644 -10.1206 0.0454 25 1 2.1996 -8.9766 1.2520 26 7 2.1564 -1.1479 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6451 2.1355 -0.0004 31 1 4.2494 4.4391 -0.0005 32 1 5.0825 -2.4893 0.0064 33 1 2.6911 -3.6953 0.9026 34 1 2.6908 -3.7038 -0.8773 35 1 5.7290 -3.9357 -1.2352 36 1 5.8053 -5.7138 -1.2260 37 1 4.5096 -4.8830 -2.1206 38 1 4.5090 -4.8616 2.1579 39 1 5.8042 -5.7017 1.2725 40 1 5.7286 -3.9232 1.2633 41 1 5.8252 -8.3036 0.0360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600106458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:08 Heat of formation + Delta-G solvation = -69.082574 kcal Electronic energy + Delta-G solvation = -28038.223028 eV Core-core repulsion = 23921.166695 eV Total energy + Delta-G solvation = -4117.056333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.50704 -41.96393 -41.14932 -38.96543 -37.66903 -37.50607 -36.27506 -34.82453 -33.61431 -31.81838 -30.18829 -27.72431 -27.67860 -27.13163 -26.65304 -25.67324 -23.76937 -22.54355 -20.90791 -20.43165 -19.97489 -19.76570 -18.87000 -18.79404 -18.01474 -17.55049 -17.26139 -17.19459 -16.48942 -16.33480 -15.59239 -15.50504 -15.10922 -15.00852 -14.73874 -14.18736 -13.92416 -13.85632 -13.32377 -13.19525 -13.08967 -12.96634 -12.89267 -12.76597 -12.65241 -12.51434 -12.41885 -12.41265 -12.34604 -12.17183 -11.86698 -11.55110 -11.31423 -11.18637 -11.12192 -10.80191 -10.43154 -9.28718 -8.04921 -6.22964 -1.17978 -0.71670 -0.34702 0.18803 1.07698 1.27710 1.45439 1.46063 1.52937 1.76415 2.17378 2.44325 2.89665 3.16204 3.19159 3.21795 3.47882 3.87796 4.11813 4.23163 4.38994 4.41032 4.55907 4.73931 4.80817 4.83491 4.88743 4.89570 4.95526 5.05325 5.05894 5.15468 5.28844 5.36138 5.52738 5.61269 5.62366 5.79761 5.98288 6.10591 6.30908 6.33519 6.54677 6.58509 6.82305 7.45819 8.94711 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.003584 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.034374 B = 7809.969672 C = 8985.386785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.218 3.782 3 C -0.145 4.145 4 C -0.002 4.002 5 C 0.532 3.468 6 O -0.532 6.532 7 O -0.473 6.473 8 C -0.157 4.157 9 N 0.043 4.957 10 O -0.157 6.157 11 O -0.157 6.157 12 C 0.449 3.551 13 N -0.703 5.703 14 C 0.159 3.841 15 C 0.049 3.951 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.024 3.976 21 N -0.905 5.905 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.273 1.273 26 N -0.514 5.514 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.214 0.786 31 H 0.445 0.555 32 H 0.403 0.597 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.013 0.987 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 21.632 -0.037 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 C -0.168 4.168 4 C -0.012 4.012 5 C 0.374 3.626 6 O -0.422 6.422 7 O -0.287 6.287 8 C -0.248 4.248 9 N 0.570 4.430 10 O -0.379 6.379 11 O -0.378 6.378 12 C 0.210 3.790 13 N -0.330 5.330 14 C 0.037 3.963 15 C 0.048 3.952 16 C -0.179 4.179 17 C -0.179 4.179 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.176 4.176 21 N -0.543 5.543 22 Si 0.780 3.220 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.198 1.198 26 N -0.235 5.235 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.230 0.770 31 H 0.310 0.690 32 H 0.240 0.760 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.032 0.968 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.085 20.174 -0.037 24.047 hybrid contribution 2.020 -0.073 0.008 2.021 sum -11.065 20.102 -0.029 22.946 Atomic orbital electron populations 1.21137 0.83162 1.06326 1.05871 1.22345 0.99804 0.85763 0.84588 1.22519 0.89247 1.02482 1.02522 1.19003 0.95396 0.87280 0.99535 1.20427 0.84785 0.85178 0.72182 1.91045 1.16461 1.88547 1.46193 1.84418 1.44294 1.15826 1.84143 1.21234 0.78805 0.96428 1.28316 1.43293 1.03468 0.96443 0.99828 1.94514 1.69827 1.52448 1.21064 1.94515 1.69941 1.52453 1.20939 1.17866 0.88681 0.83890 0.88549 1.45428 1.09302 1.03247 1.74989 1.21509 0.93302 0.80741 1.00759 1.18410 0.92640 0.91579 0.92576 1.21689 0.99439 0.99153 0.97597 1.21688 0.99441 0.99131 0.97611 1.21165 0.92918 0.90656 1.51568 0.92322 1.25579 0.95810 1.01696 0.94487 1.69939 1.08608 1.25326 1.50425 0.85686 0.78565 0.79070 0.78726 1.19771 1.21416 1.19778 1.67486 1.03940 1.31545 1.20503 0.87061 0.85675 0.89877 0.76956 0.69049 0.75970 0.92135 0.92134 0.96778 0.91741 0.95434 0.95438 0.91743 0.96774 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.16 71.24 0.72 -0.14 16 2 C 0.22 3.85 6.77 42.49 0.29 4.14 16 3 C -0.15 -2.19 9.32 22.64 0.21 -1.98 16 4 C 0.00 -0.06 5.90 -19.91 -0.12 -0.18 16 5 C 0.53 12.01 8.30 70.43 0.58 12.60 16 6 O -0.53 -16.90 15.51 24.95 0.39 -16.51 16 7 O -0.47 -5.04 12.78 -55.67 -0.71 -5.75 16 8 C -0.16 -5.16 6.22 36.90 0.23 -4.93 16 9 N 0.04 1.65 1.73 -45.21 -0.08 1.57 16 10 O -0.16 -6.43 19.01 21.57 0.41 -6.02 16 11 O -0.16 -6.43 19.02 21.54 0.41 -6.02 16 12 C 0.45 15.01 7.48 133.06 0.99 16.00 16 13 N -0.70 -26.77 5.10 -345.13 -1.76 -28.53 16 14 C 0.16 6.47 4.52 86.38 0.39 6.86 16 15 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 16 C -0.12 -5.79 8.08 71.98 0.58 -5.21 16 17 C -0.12 -5.79 8.08 71.98 0.58 -5.21 16 18 C -0.52 -27.03 8.01 25.60 0.21 -26.82 16 19 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 20 C 0.02 1.26 5.15 84.65 0.44 1.69 16 21 N -0.90 -49.37 9.35 21.45 0.20 -49.16 16 22 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 N -0.51 -14.30 9.44 -181.47 -1.71 -16.01 16 27 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.12 0.10 8.07 -2.39 -0.02 0.08 16 29 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.21 1.10 7.71 -2.91 -0.02 1.07 16 31 H 0.45 0.75 9.11 -74.05 -0.67 0.07 16 32 H 0.40 16.39 5.39 -92.71 -0.50 15.89 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.01 0.61 6.86 -2.39 -0.02 0.59 16 36 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 40 H 0.01 0.61 6.86 -2.39 -0.02 0.59 16 41 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -71.74 352.35 4.18 -67.56 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.07 Total: 15.92 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.08 Total: -0.90 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -3.35 Total: -92.13 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: 0.50 Total: -34.31 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -71.74 4.18 -67.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600106458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.523 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds