Wall clock time and date at job start Tue Mar 31 2020 14:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99689 * 359.90912 * 6 4 3 8 8 C 1.50703 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.46665 * 159.97547 * 8 7 6 10 10 N 1.46896 * 109.47483 * 39.97475 * 8 7 6 11 11 C 1.46900 * 111.00228 * 155.00214 * 10 8 7 12 12 C 1.53000 * 109.47271 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46955 * 179.97438 * 12 11 10 14 14 S 1.80996 * 109.47254 * 179.97438 * 13 12 11 15 15 C 1.76194 * 100.00170 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00182 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99835 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99786 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 119.99956 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47202 * 90.00311 * 19 17 15 21 21 H 1.48497 * 109.47080 * 209.99746 * 19 17 15 22 22 H 1.48496 * 109.47330 * 329.99961 * 19 17 15 23 23 C 1.50705 * 109.46901 * 279.97332 * 8 7 6 24 24 O 1.20819 * 120.00238 * 120.00380 * 23 8 7 25 25 O 1.34233 * 119.99853 * 300.00187 * 23 8 7 26 26 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 28 28 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 29 29 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 30 30 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 31 31 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 32 32 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 33 33 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 34 34 H 1.07997 * 119.99852 * 179.97438 * 6 4 3 35 35 H 1.00898 * 110.99990 * 278.95401 * 10 8 7 36 36 H 1.09004 * 109.46565 * 300.00090 * 11 10 8 37 37 H 1.09001 * 109.47168 * 59.99547 * 11 10 8 38 38 H 1.08997 * 109.46491 * 299.99445 * 12 11 10 39 39 H 1.08997 * 109.47265 * 60.00111 * 12 11 10 40 40 H 1.09004 * 109.46825 * 299.99966 * 13 12 11 41 41 H 1.09001 * 109.47224 * 59.99617 * 13 12 11 42 42 H 0.97004 * 119.99828 * 179.97438 * 18 17 15 43 43 H 0.96701 * 116.99934 * 180.02562 * 25 23 8 44 44 H 1.08001 * 120.00371 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0000 8 6 4.3340 -2.5022 -0.0005 9 1 3.6797 -3.2996 0.3518 10 7 5.4986 -2.3957 0.8885 11 6 5.9046 -3.7172 1.3851 12 6 7.1170 -3.5657 2.3059 13 6 7.5394 -4.9421 2.8235 14 16 8.9741 -4.7631 3.9123 15 6 9.2380 -6.4491 4.3506 16 1 8.5905 -7.2176 3.9550 17 6 10.2775 -6.7895 5.2052 18 7 10.4743 -8.0491 5.5330 19 14 11.3969 -5.4602 5.8900 20 1 10.8400 -4.9554 7.1706 21 1 12.7493 -6.0258 6.1273 22 1 11.4915 -4.3428 4.9166 23 6 4.7975 -2.8141 -1.4002 24 8 5.9768 -2.9352 -1.6332 25 8 3.9000 -2.9575 -2.3880 26 6 2.1981 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6582 2.1325 -0.0048 31 1 4.5154 2.8176 1.0275 32 1 5.2866 2.3716 -0.5135 33 1 3.7452 3.2616 -0.5145 34 1 5.3517 0.0000 -0.0004 35 1 6.2658 -1.9321 0.4254 36 1 5.0806 -4.1655 1.9404 37 1 6.1655 -4.3575 0.5424 38 1 7.9409 -3.1173 1.7508 39 1 6.8555 -2.9257 3.1486 40 1 6.7152 -5.3902 3.3787 41 1 7.8007 -5.5826 1.9812 42 1 11.2009 -8.2870 6.1299 43 1 4.2450 -3.1575 -3.2690 44 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600169976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:40 Heat of formation + Delta-G solvation = -90.934554 kcal Electronic energy + Delta-G solvation = -23977.351238 eV Core-core repulsion = 20405.640546 eV Total energy + Delta-G solvation = -3571.710692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01437 -39.62632 -37.17610 -36.11184 -33.92676 -33.79559 -32.41972 -31.41516 -28.11274 -27.21622 -26.99993 -25.70773 -24.47922 -22.67399 -21.51383 -20.84900 -20.43724 -18.41884 -17.52969 -17.38548 -16.79717 -16.30352 -15.83384 -15.39418 -14.99370 -14.82147 -14.68553 -14.30533 -14.15147 -13.83869 -13.50137 -13.46809 -13.19388 -12.87342 -12.83980 -12.76962 -12.44904 -12.26578 -12.05704 -11.89733 -11.86891 -11.53382 -11.33277 -11.25782 -11.08621 -11.04014 -11.00403 -10.54034 -10.15200 -9.76829 -8.98769 -8.96100 -8.86625 -8.77318 -8.54245 -6.91926 -6.26651 -3.98576 1.00747 1.13188 1.84234 2.69120 3.01618 3.31860 3.39402 3.47589 3.59173 3.92522 4.28294 4.33643 4.46343 4.50176 4.77257 4.82434 4.87649 4.90955 5.03000 5.06724 5.12052 5.19124 5.24198 5.27635 5.30055 5.35021 5.36458 5.53029 5.57887 5.60008 5.79631 5.82525 5.88751 5.93097 6.14767 6.19220 6.24417 6.27212 6.34950 6.48065 6.54852 6.71576 6.76209 7.01033 7.52973 7.97178 8.46083 9.19311 10.82850 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002278 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.831449 B =12286.269595 C =12788.991032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.117 4.117 4 C -0.084 4.084 5 C -0.115 4.115 6 C -0.098 4.098 7 C -0.064 4.064 8 C 0.139 3.861 9 H 0.125 0.875 10 N -0.652 5.652 11 C 0.056 3.944 12 C -0.097 4.097 13 C -0.082 4.082 14 S -0.214 6.214 15 C -0.502 4.502 16 H 0.088 0.912 17 C 0.091 3.909 18 N -0.882 5.882 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.238 1.238 23 C 0.454 3.546 24 O -0.510 6.510 25 O -0.511 6.511 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.355 0.645 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.270 0.730 43 H 0.407 0.593 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.306 18.990 -15.715 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.084 4.084 5 C -0.171 4.171 6 C -0.116 4.116 7 C -0.065 4.065 8 C 0.026 3.974 9 H 0.143 0.857 10 N -0.285 5.285 11 C -0.074 4.074 12 C -0.136 4.136 13 C -0.231 4.231 14 S 0.014 5.986 15 C -0.649 4.649 16 H 0.106 0.894 17 C -0.117 4.117 18 N -0.519 5.519 19 Si 0.687 3.313 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.162 1.162 23 C 0.294 3.706 24 O -0.398 6.398 25 O -0.322 6.322 26 C -0.122 4.122 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.176 0.824 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.266 0.734 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.795 19.970 -14.407 31.595 hybrid contribution 0.672 -1.460 -1.308 2.073 sum -19.123 18.510 -15.716 30.908 Atomic orbital electron populations 1.20780 0.91054 1.02865 1.02302 1.19818 0.96039 0.92858 0.99749 1.20926 0.93484 0.97555 1.01515 1.19870 0.93781 0.95236 0.99490 1.20796 0.99878 0.93872 1.02587 1.20811 0.99925 0.91182 0.99726 1.19186 0.93206 0.92634 1.01497 1.20274 0.95265 0.97635 0.84213 0.85730 1.60943 1.09209 1.21550 1.36777 1.22191 0.98702 0.88535 0.97937 1.21264 0.96127 0.97011 0.99186 1.22992 1.00351 0.98518 1.01196 1.84156 1.37454 1.16354 1.60635 1.22129 1.19577 0.89301 1.33929 0.89436 1.24806 0.96497 0.95574 0.94865 1.69942 1.31137 1.16353 1.34496 0.86657 0.80382 0.83006 0.81231 1.19357 1.20144 1.16153 1.24868 0.84519 0.72249 0.88947 1.90760 1.18725 1.46703 1.83571 1.84582 1.43167 1.82602 1.21818 1.20805 0.92848 0.97916 1.00647 0.91204 0.91406 0.91572 0.86161 0.90910 0.91481 0.91647 0.85970 0.82399 0.90427 0.94308 0.91448 0.90438 0.91328 0.91520 0.92001 0.73429 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.08 -0.69 5.88 -104.63 -0.62 -1.31 16 3 C -0.12 -0.96 9.36 -39.58 -0.37 -1.33 16 4 C -0.08 -0.75 5.88 -104.62 -0.62 -1.36 16 5 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 6 C -0.10 -0.98 8.98 -39.58 -0.36 -1.33 16 7 C -0.06 -0.63 4.88 -104.62 -0.51 -1.14 16 8 C 0.14 1.40 2.70 -70.01 -0.19 1.21 16 9 H 0.13 1.09 7.66 -51.93 -0.40 0.70 16 10 N -0.65 -7.55 5.56 -109.18 -0.61 -8.15 16 11 C 0.06 0.73 5.38 -3.82 -0.02 0.71 16 12 C -0.10 -1.52 5.48 -26.73 -0.15 -1.67 16 13 C -0.08 -1.61 5.67 37.16 0.21 -1.39 16 14 S -0.21 -5.30 19.41 -107.50 -2.09 -7.39 16 15 C -0.50 -14.77 10.04 30.94 0.31 -14.46 16 16 H 0.09 2.74 8.03 -52.49 -0.42 2.31 16 17 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 18 N -0.88 -27.07 13.97 55.49 0.78 -26.29 16 19 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 23 C 0.45 4.87 7.44 36.01 0.27 5.14 16 24 O -0.51 -7.00 16.06 -18.74 -0.30 -7.30 16 25 O -0.51 -4.20 13.34 -39.27 -0.52 -4.72 16 26 C -0.10 -0.91 9.33 -39.59 -0.37 -1.28 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.12 1.20 7.25 -52.49 -0.38 0.82 16 35 H 0.35 4.24 7.10 -39.29 -0.28 3.97 16 36 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 37 H 0.04 0.53 7.62 -51.93 -0.40 0.14 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 41 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 42 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.41 1.79 9.10 45.56 0.41 2.21 16 44 H 0.12 0.89 8.04 -52.49 -0.42 0.47 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -34.09 383.97 -9.54 -43.63 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.09 Total: 3.67 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.78 Total: -16.35 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.17 Total: -34.45 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.82 Total: -12.02 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.09 Total: -7.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.09 -9.54 -43.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600169976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.303 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds