Wall clock time and date at job start Tue Mar 31 2020 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39751 * 125.83690 * 2 1 4 4 C 1.36108 * 107.83036 * 180.02562 * 3 2 1 5 5 N 1.39475 * 126.22034 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99814 * 0.03033 * 5 4 3 7 7 O 1.21288 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99735 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.33385 * 304.29870 * 8 6 5 10 10 C 1.54487 * 110.37161 * 66.54601 * 8 6 5 11 11 C 1.54692 * 103.97537 * 142.73794 * 10 8 6 12 12 C 1.54477 * 104.07978 * 0.13301 * 11 10 8 13 13 H 1.09007 * 110.36849 * 94.76448 * 12 11 10 14 14 C 1.50698 * 110.37201 * 217.09704 * 12 11 10 15 15 O 1.20827 * 120.00019 * 111.83853 * 14 12 11 16 16 O 1.34232 * 120.00328 * 291.83929 * 14 12 11 17 17 O 1.44422 * 104.80633 * 335.93408 * 12 11 10 18 18 N 1.35263 * 107.56192 * 0.26548 * 4 3 2 19 19 C 1.46505 * 126.04238 * 179.70755 * 18 4 3 20 20 C 1.50694 * 109.47328 * 89.99787 * 19 18 4 21 21 H 1.08005 * 120.00150 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99988 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99744 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47270 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47453 * 120.00374 * 24 22 20 27 27 H 1.48504 * 109.47309 * 240.00383 * 24 22 20 28 28 N 1.30840 * 125.83890 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46762 * 89.99877 * 1 2 3 30 30 H 1.09000 * 109.46583 * 210.00053 * 1 2 3 31 31 H 1.09000 * 109.47047 * 329.99772 * 1 2 3 32 32 H 1.08001 * 126.08850 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99511 * 180.02562 * 5 4 3 34 34 H 1.08995 * 110.51208 * 261.44934 * 10 8 6 35 35 H 1.08995 * 110.51190 * 24.16413 * 10 8 6 36 36 H 1.08996 * 110.57887 * 241.44424 * 11 10 8 37 37 H 1.08997 * 110.54046 * 118.80416 * 11 10 8 38 38 H 0.96696 * 117.00208 * 179.97438 * 16 14 12 39 39 H 1.09007 * 109.46646 * 209.99931 * 19 18 4 40 40 H 1.08999 * 109.47281 * 329.99187 * 19 18 4 41 41 H 0.97007 * 119.99819 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7513 1.5275 -0.0013 6 6 4.6157 2.8685 -0.0008 7 8 3.5096 3.3661 -0.0003 8 6 5.8384 3.7494 -0.0010 9 1 6.4827 3.5032 0.8431 10 6 6.6112 3.5965 -1.3299 11 6 7.1226 5.0250 -1.6312 12 6 6.6006 5.8685 -0.4470 13 1 7.3635 5.9479 0.3277 14 6 6.1876 7.2383 -0.9204 15 8 5.0217 7.5551 -0.9096 16 8 7.1150 8.1065 -1.3541 17 8 5.4554 5.1411 0.0479 18 7 3.6092 -0.6404 -0.0069 19 6 4.7871 -1.5115 -0.0158 20 6 5.1967 -1.8169 1.4019 21 1 4.6356 -1.4038 2.2271 22 6 6.2873 -2.6246 1.6456 23 7 6.9703 -3.1280 0.6408 24 14 6.7947 -3.0037 3.4030 25 1 5.8696 -2.3216 4.3434 26 1 6.7375 -4.4701 3.6294 27 1 8.1801 -2.5209 3.6334 28 7 2.2731 -1.0607 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9902 2.1597 0.0004 33 1 5.6358 1.1294 -0.0020 34 1 7.4469 2.9074 -1.2086 35 1 5.9450 3.2548 -2.1220 36 1 6.7091 5.3897 -2.5714 37 1 8.2120 5.0427 -1.6618 38 1 6.8019 8.9728 -1.6481 39 1 4.5478 -2.4407 -0.5330 40 1 5.6063 -1.0097 -0.5307 41 1 7.7378 -3.6959 0.8123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600272587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:19 Heat of formation + Delta-G solvation = -86.453173 kcal Electronic energy + Delta-G solvation = -27217.194915 eV Core-core repulsion = 23099.385336 eV Total energy + Delta-G solvation = -4117.809579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21688 -40.73506 -39.74411 -38.34310 -36.41637 -34.81506 -33.81644 -32.63540 -32.08466 -30.95467 -29.13600 -28.19674 -26.07584 -25.58183 -22.98444 -22.64626 -21.62439 -21.37104 -19.79699 -19.43491 -18.39639 -17.66575 -17.18607 -16.90196 -16.59813 -16.48200 -15.64509 -15.41599 -15.23926 -14.85609 -14.63060 -14.29726 -14.07875 -13.89013 -13.62628 -12.91816 -12.79587 -12.52755 -12.51445 -12.26836 -12.20264 -12.01910 -11.84787 -11.76014 -11.59167 -11.35304 -11.09316 -10.94258 -10.85104 -10.43623 -10.39279 -10.36647 -9.86552 -9.81976 -9.46932 -8.76391 -7.94297 -7.47011 -6.37372 -4.45745 1.80491 2.07023 2.18003 2.70804 3.04606 3.12078 3.21654 3.27628 3.54146 3.57996 3.80315 4.02192 4.21183 4.33560 4.37202 4.52979 4.58681 4.79319 4.94138 4.96142 5.09645 5.32022 5.35446 5.43871 5.56932 5.62646 6.03606 6.05233 6.10770 6.15921 6.17287 6.28154 6.39343 6.65713 6.80263 7.01447 7.47460 7.52907 7.54314 7.59167 7.76025 7.87842 8.23734 8.59185 8.68319 9.22181 10.69656 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.003526 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.944585 B = 7940.125933 C = 9697.454460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 C -0.294 4.294 4 C 0.302 3.698 5 N -0.635 5.635 6 C 0.523 3.477 7 O -0.488 6.488 8 C 0.063 3.937 9 H 0.111 0.889 10 C -0.148 4.148 11 C -0.136 4.136 12 C 0.082 3.918 13 H 0.116 0.884 14 C 0.482 3.518 15 O -0.486 6.486 16 O -0.513 6.513 17 O -0.315 6.315 18 N -0.344 5.344 19 C 0.256 3.744 20 C -0.540 4.540 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 N -0.284 5.284 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.417 0.583 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 17.106 -5.012 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.326 4.326 4 C 0.079 3.921 5 N -0.284 5.284 6 C 0.307 3.693 7 O -0.359 6.359 8 C 0.002 3.998 9 H 0.128 0.872 10 C -0.186 4.186 11 C -0.174 4.174 12 C 0.023 3.977 13 H 0.133 0.867 14 C 0.322 3.678 15 O -0.371 6.371 16 O -0.327 6.327 17 O -0.232 6.232 18 N -0.129 5.129 19 C 0.138 3.862 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.109 5.109 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.275 0.725 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.696 15.836 -4.858 16.972 hybrid contribution 1.009 0.769 0.752 1.474 sum 4.705 16.605 -4.106 17.740 Atomic orbital electron populations 1.20028 0.87540 1.02496 1.02077 1.22028 0.96549 0.90978 1.01752 1.21298 0.89110 1.00533 1.21659 1.17846 0.87778 0.83321 1.03107 1.42562 1.08474 1.05059 1.72317 1.19909 0.90628 0.81381 0.77352 1.90701 1.26132 1.73436 1.45610 1.22853 0.93899 0.82907 1.00125 0.87154 1.23049 1.01110 0.97780 0.96655 1.22904 1.02837 0.93740 0.97948 1.22386 0.89766 0.87721 0.97875 0.86698 1.22807 0.83718 0.86645 0.74612 1.90806 1.19747 1.77256 1.49252 1.84456 1.42597 1.29038 1.76586 1.89390 1.34199 1.14915 1.84731 1.49358 1.06570 1.02054 1.54951 1.19628 0.77810 0.89774 0.98940 1.21399 1.13214 1.31839 0.91418 0.91608 1.24935 0.95730 0.94861 0.98157 1.69925 1.19248 1.32743 1.30841 0.86308 0.78332 0.78507 0.83621 1.19526 1.20532 1.20629 1.77358 0.86089 1.21751 1.25735 0.91340 0.91473 0.91086 0.82141 0.74664 0.87989 0.89207 0.89688 0.88156 0.72503 0.92514 0.93811 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.05 7.21 -82.45 -0.59 0.46 16 3 C -0.29 -6.14 9.58 -39.78 -0.38 -6.52 16 4 C 0.30 6.32 7.66 -153.16 -1.17 5.15 16 5 N -0.64 -10.72 5.41 -11.46 -0.06 -10.78 16 6 C 0.52 8.38 7.04 -10.99 -0.08 8.30 16 7 O -0.49 -9.69 13.68 -13.66 -0.19 -9.88 16 8 C 0.06 0.72 3.70 -27.10 -0.10 0.62 16 9 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.15 -1.23 6.63 -25.06 -0.17 -1.39 16 11 C -0.14 -0.94 6.63 -25.07 -0.17 -1.11 16 12 C 0.08 0.74 3.82 -27.11 -0.10 0.64 16 13 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 14 C 0.48 4.89 7.57 36.00 0.27 5.17 16 15 O -0.49 -7.17 17.31 -25.28 -0.44 -7.61 16 16 O -0.51 -3.23 13.42 -39.26 -0.53 -3.76 16 17 O -0.31 -4.26 10.17 -64.23 -0.65 -4.92 16 18 N -0.34 -7.96 3.60 -61.57 -0.22 -8.18 16 19 C 0.26 6.24 6.00 -5.19 -0.03 6.21 16 20 C -0.54 -14.20 9.39 -34.44 -0.32 -14.52 16 21 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -23.66 13.29 55.43 0.74 -22.92 16 24 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 28 N -0.28 -6.61 12.56 33.65 0.42 -6.19 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 3.34 5.83 -52.49 -0.31 3.03 16 33 H 0.42 6.18 7.97 -40.82 -0.33 5.86 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 36 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.42 0.95 9.10 45.56 0.41 1.37 16 39 H 0.06 1.50 8.14 -51.92 -0.42 1.07 16 40 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -36.43 358.84 -7.46 -43.89 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.35 Total: 5.69 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.57 Total: 4.06 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.88 Total: -48.08 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.81 Total: -26.17 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.43 -7.46 -43.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600272587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.563 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds