Wall clock time and date at job start Tue Mar 31 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39751 * 125.83690 * 2 1 4 4 C 1.36108 * 107.83036 * 180.02562 * 3 2 1 5 5 N 1.39475 * 126.22034 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99814 * 0.03033 * 5 4 3 7 7 O 1.21288 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99735 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.33385 * 304.29870 * 8 6 5 10 10 C 1.54487 * 110.37161 * 66.54601 * 8 6 5 11 11 C 1.54692 * 103.97537 * 142.73794 * 10 8 6 12 12 C 1.54477 * 104.07978 * 0.13301 * 11 10 8 13 13 H 1.09007 * 110.36849 * 94.76448 * 12 11 10 14 14 C 1.50698 * 110.37201 * 217.09704 * 12 11 10 15 15 O 1.20827 * 120.00019 * 111.83853 * 14 12 11 16 16 O 1.34232 * 120.00328 * 291.83929 * 14 12 11 17 17 O 1.44422 * 104.80633 * 335.93408 * 12 11 10 18 18 N 1.35263 * 107.56192 * 0.26548 * 4 3 2 19 19 C 1.46505 * 126.04238 * 179.70755 * 18 4 3 20 20 C 1.50694 * 109.47328 * 89.99787 * 19 18 4 21 21 H 1.08005 * 120.00150 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99988 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99744 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47270 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47453 * 120.00374 * 24 22 20 27 27 H 1.48504 * 109.47309 * 240.00383 * 24 22 20 28 28 N 1.30840 * 125.83890 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46762 * 89.99877 * 1 2 3 30 30 H 1.09000 * 109.46583 * 210.00053 * 1 2 3 31 31 H 1.09000 * 109.47047 * 329.99772 * 1 2 3 32 32 H 1.08001 * 126.08850 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99511 * 180.02562 * 5 4 3 34 34 H 1.08995 * 110.51208 * 261.44934 * 10 8 6 35 35 H 1.08995 * 110.51190 * 24.16413 * 10 8 6 36 36 H 1.08996 * 110.57887 * 241.44424 * 11 10 8 37 37 H 1.08997 * 110.54046 * 118.80416 * 11 10 8 38 38 H 0.96696 * 117.00208 * 179.97438 * 16 14 12 39 39 H 1.09007 * 109.46646 * 209.99931 * 19 18 4 40 40 H 1.08999 * 109.47281 * 329.99187 * 19 18 4 41 41 H 0.97007 * 119.99819 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7122 -0.0006 5 7 4.7513 1.5275 -0.0013 6 6 4.6157 2.8685 -0.0008 7 8 3.5096 3.3661 -0.0003 8 6 5.8384 3.7494 -0.0010 9 1 6.4827 3.5032 0.8431 10 6 6.6112 3.5965 -1.3299 11 6 7.1226 5.0250 -1.6312 12 6 6.6006 5.8685 -0.4470 13 1 7.3635 5.9479 0.3277 14 6 6.1876 7.2383 -0.9204 15 8 5.0217 7.5551 -0.9096 16 8 7.1150 8.1065 -1.3541 17 8 5.4554 5.1411 0.0479 18 7 3.6092 -0.6404 -0.0069 19 6 4.7871 -1.5115 -0.0158 20 6 5.1967 -1.8169 1.4019 21 1 4.6356 -1.4038 2.2271 22 6 6.2873 -2.6246 1.6456 23 7 6.9703 -3.1280 0.6408 24 14 6.7947 -3.0037 3.4030 25 1 5.8696 -2.3216 4.3434 26 1 6.7375 -4.4701 3.6294 27 1 8.1801 -2.5209 3.6334 28 7 2.2731 -1.0607 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9902 2.1597 0.0004 33 1 5.6358 1.1294 -0.0020 34 1 7.4469 2.9074 -1.2086 35 1 5.9450 3.2548 -2.1220 36 1 6.7091 5.3897 -2.5714 37 1 8.2120 5.0427 -1.6618 38 1 6.8019 8.9728 -1.6481 39 1 4.5478 -2.4407 -0.5330 40 1 5.6063 -1.0097 -0.5307 41 1 7.7378 -3.6959 0.8123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600272587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:18 Heat of formation + Delta-G solvation = -112.665584 kcal Electronic energy + Delta-G solvation = -27218.331571 eV Core-core repulsion = 23099.385336 eV Total energy + Delta-G solvation = -4118.946234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.53556 -41.78063 -40.84759 -39.42710 -37.14491 -36.33842 -35.63046 -33.88498 -33.32272 -31.90618 -30.69666 -29.68778 -27.82032 -26.53804 -24.75316 -23.53984 -22.60223 -22.28369 -21.31981 -20.81585 -19.22639 -18.88583 -18.65258 -18.23718 -17.82186 -17.51007 -16.76973 -16.70868 -16.28386 -16.22336 -16.07824 -15.57696 -15.35931 -14.86688 -14.67456 -14.46032 -14.38479 -14.05903 -13.63425 -13.41610 -13.27767 -13.14695 -12.90950 -12.87868 -12.83907 -12.69706 -12.58545 -12.30518 -12.01695 -11.94996 -11.68273 -11.67499 -11.43837 -11.18713 -10.81625 -10.74409 -9.65374 -9.11184 -8.35115 -6.52120 0.71980 1.03088 1.10179 1.36686 1.40843 1.51149 1.56678 1.67923 2.00034 2.14813 2.35815 2.89794 2.95546 3.16818 3.55143 3.64900 3.80849 3.87538 3.97045 4.06216 4.21145 4.34249 4.50283 4.60433 4.69956 4.80265 4.84066 4.86069 4.87634 4.91545 4.92994 4.94539 5.18911 5.21309 5.41314 5.53018 5.56502 5.78261 5.92704 6.10690 6.25921 6.58180 6.88750 6.92112 7.00040 7.20016 8.71460 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.003526 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.944585 B = 7940.125933 C = 9697.454460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.312 4.312 4 C 0.302 3.698 5 N -0.628 5.628 6 C 0.520 3.480 7 O -0.531 6.531 8 C 0.068 3.932 9 H 0.146 0.854 10 C -0.144 4.144 11 C -0.126 4.126 12 C 0.073 3.927 13 H 0.153 0.847 14 C 0.488 3.512 15 O -0.545 6.545 16 O -0.496 6.496 17 O -0.358 6.358 18 N -0.363 5.363 19 C 0.271 3.729 20 C -0.556 4.556 21 H 0.045 0.955 22 C 0.031 3.969 23 N -0.911 5.911 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.278 1.278 27 H -0.261 1.261 28 N -0.328 5.328 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.426 0.574 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.433 0.567 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 17.967 -4.603 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.343 4.343 4 C 0.079 3.921 5 N -0.278 5.278 6 C 0.308 3.692 7 O -0.405 6.405 8 C 0.008 3.992 9 H 0.163 0.837 10 C -0.182 4.182 11 C -0.164 4.164 12 C 0.015 3.985 13 H 0.170 0.830 14 C 0.331 3.669 15 O -0.434 6.434 16 O -0.311 6.311 17 O -0.277 6.277 18 N -0.149 5.149 19 C 0.153 3.847 20 C -0.595 4.595 21 H 0.064 0.936 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.792 3.208 25 H -0.204 1.204 26 H -0.204 1.204 27 H -0.186 1.186 28 N -0.153 5.153 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.178 0.822 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.296 0.704 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.046 16.725 -4.475 18.339 hybrid contribution 0.283 0.608 0.568 0.879 sum 6.329 17.333 -3.907 18.862 Atomic orbital electron populations 1.20226 0.84018 1.03851 1.03884 1.22843 0.98720 0.89985 0.99061 1.21457 0.89495 1.00660 1.22729 1.18198 0.89323 0.82908 1.01636 1.42697 1.07819 1.05232 1.72072 1.20979 0.91866 0.81046 0.75345 1.90670 1.28392 1.73982 1.47463 1.23032 0.91514 0.81414 1.03249 0.83653 1.23125 1.01334 0.99536 0.94205 1.22949 1.04988 0.91873 0.96580 1.22817 0.89083 0.86853 0.99744 0.82980 1.23161 0.83120 0.87368 0.73274 1.90791 1.22162 1.78483 1.52001 1.84420 1.41208 1.29809 1.75635 1.89351 1.36973 1.15971 1.85376 1.49198 1.06362 1.02671 1.56649 1.19289 0.78549 0.89040 0.97862 1.21426 1.13667 1.32755 0.91613 0.93628 1.25623 0.95400 0.94259 1.01814 1.69985 1.19547 1.32825 1.32533 0.85371 0.78534 0.78073 0.78850 1.20387 1.20379 1.18606 1.77305 0.86490 1.23390 1.28136 0.89187 0.90685 0.89105 0.82176 0.73499 0.84721 0.90988 0.90399 0.84232 0.70408 0.95446 0.92766 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.81 10.44 71.24 0.74 -1.06 16 2 C 0.06 2.43 7.21 43.07 0.31 2.74 16 3 C -0.31 -13.29 9.58 22.14 0.21 -13.08 16 4 C 0.30 12.93 7.66 131.32 1.01 13.93 16 5 N -0.63 -21.24 5.41 -308.57 -1.67 -22.91 16 6 C 0.52 16.67 7.04 87.66 0.62 17.29 16 7 O -0.53 -21.71 13.68 15.31 0.21 -21.50 16 8 C 0.07 1.44 3.70 30.35 0.11 1.55 16 9 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.14 -2.01 6.63 31.68 0.21 -1.80 16 11 C -0.13 -1.32 6.63 31.67 0.21 -1.11 16 12 C 0.07 1.14 3.82 30.35 0.12 1.26 16 13 H 0.15 1.21 8.14 -2.38 -0.02 1.19 16 14 C 0.49 9.26 7.57 71.24 0.54 9.80 16 15 O -0.54 -16.35 17.31 28.20 0.49 -15.86 16 16 O -0.50 -5.03 13.42 -51.44 -0.69 -5.72 16 17 O -0.36 -9.37 10.17 -121.26 -1.23 -10.61 16 18 N -0.36 -17.30 3.60 -348.70 -1.26 -18.56 16 19 C 0.27 13.55 6.00 85.63 0.51 14.07 16 20 C -0.56 -29.65 9.39 25.60 0.24 -29.41 16 21 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 22 C 0.03 1.60 5.46 84.66 0.46 2.06 16 23 N -0.91 -47.96 13.29 21.45 0.28 -47.68 16 24 Si 0.97 40.86 29.54 68.60 2.03 42.89 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 28 N -0.33 -15.69 12.56 -47.45 -0.60 -16.28 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.16 6.85 5.83 -2.91 -0.02 6.84 16 33 H 0.43 12.39 7.97 -92.71 -0.74 11.65 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.28 7.86 -2.39 -0.02 1.26 16 36 H 0.08 0.95 7.86 -2.39 -0.02 0.93 16 37 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.43 1.09 9.10 -74.06 -0.67 0.42 16 39 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.05 2.54 7.50 -2.39 -0.02 2.52 16 41 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 Total: -1.00 -82.79 358.84 2.54 -80.25 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.31 Total: 19.75 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 5.29 Total: 16.24 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.24 Total: -105.43 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -1.23 Total: -53.69 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -82.79 2.54 -80.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600272587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.419 kcal (2) G-P(sol) polarization free energy of solvation -82.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds