Wall clock time and date at job start Tue Mar 31 2020 14:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38329 * 119.91614 * 2 1 4 4 C 1.38052 * 120.08009 * 180.25323 * 3 2 1 5 5 C 1.39000 * 119.92064 * 359.45397 * 4 3 2 6 6 S 1.76195 * 120.08202 * 180.29619 * 5 4 3 7 7 C 1.81397 * 103.00166 * 359.97438 * 6 5 4 8 8 C 1.52995 * 109.47133 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47361 * 179.97438 * 8 7 6 10 10 C 1.36935 * 120.00165 * 265.59929 * 9 8 7 11 11 H 1.07996 * 120.00179 * 149.15816 * 10 9 8 12 12 C 1.38813 * 119.99680 * 329.15105 * 10 9 8 13 13 N 1.31614 * 120.00183 * 332.72854 * 12 10 9 14 14 Si 1.86801 * 119.99495 * 152.72303 * 12 10 9 15 15 H 1.48504 * 109.47000 * 85.00465 * 14 12 10 16 16 H 1.48509 * 109.46890 * 205.00036 * 14 12 10 17 17 H 1.48501 * 109.47316 * 325.00109 * 14 12 10 18 18 C 1.46495 * 119.99542 * 85.59169 * 9 8 7 19 19 C 1.53003 * 109.47340 * 90.00244 * 18 9 8 20 20 C 1.50705 * 109.47206 * 179.97438 * 19 18 9 21 21 O 1.20822 * 119.99722 * 0.02562 * 20 19 18 22 22 O 1.34222 * 119.99593 * 179.97438 * 20 19 18 23 23 C 1.38961 * 119.83616 * 0.27028 * 5 4 3 24 24 C 1.38096 * 119.91864 * 0.02562 * 23 5 4 25 25 C 1.50706 * 119.95970 * 180.02562 * 24 23 5 26 26 H 1.09001 * 109.47072 * 270.29578 * 1 2 3 27 27 H 1.08995 * 109.47324 * 30.30082 * 1 2 3 28 28 H 1.09005 * 109.46476 * 150.29690 * 1 2 3 29 29 H 1.08001 * 119.96068 * 0.02562 * 3 2 1 30 30 H 1.07997 * 120.04601 * 179.71749 * 4 3 2 31 31 H 1.09005 * 109.47220 * 300.00197 * 7 6 5 32 32 H 1.09002 * 109.46792 * 60.00172 * 7 6 5 33 33 H 1.09002 * 109.47596 * 299.99805 * 8 7 6 34 34 H 1.09002 * 109.47094 * 60.00415 * 8 7 6 35 35 H 0.97002 * 119.99809 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47194 * 210.00539 * 18 9 8 37 37 H 1.09008 * 109.47568 * 330.00163 * 18 9 8 38 38 H 1.08994 * 109.46835 * 300.00094 * 19 18 9 39 39 H 1.09004 * 109.46440 * 59.99731 * 19 18 9 40 40 H 0.96697 * 117.00007 * 180.02562 * 22 20 19 41 41 H 1.07997 * 120.03960 * 180.02562 * 23 5 4 42 42 H 1.09001 * 109.47059 * 89.99711 * 25 24 23 43 43 H 1.08998 * 109.47147 * 209.99898 * 25 24 23 44 44 H 1.08998 * 109.47023 * 329.99414 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5774 1.2029 -0.0053 5 6 4.2743 0.0002 0.0009 6 16 6.0362 0.0004 0.0021 7 6 6.4442 1.7678 -0.0068 8 6 7.9644 1.9403 -0.0061 9 7 8.2939 3.3678 -0.0138 10 6 8.5380 4.0077 -1.1996 11 1 8.2944 5.0542 -1.3086 12 6 9.0986 3.3113 -2.2615 13 7 9.8697 2.2698 -2.0316 14 14 8.7585 3.8524 -4.0168 15 1 9.7148 4.9224 -4.3990 16 1 8.9200 2.6941 -4.9319 17 1 7.3704 4.3710 -4.1148 18 6 8.3622 4.1106 1.2470 19 6 9.7872 4.0464 1.8003 20 6 9.8576 4.8110 3.0970 21 8 8.8692 5.3514 3.5340 22 8 11.0179 4.8908 3.7669 23 6 3.5778 -1.2023 0.0067 24 6 2.1969 -1.1984 0.0057 25 6 1.4406 -2.5020 0.0126 26 1 -0.3633 0.0053 1.0277 27 1 -0.3634 0.8872 -0.5185 28 1 -0.3632 -0.8927 -0.5093 29 1 1.6549 2.1331 0.0004 30 1 4.1155 2.1393 -0.0099 31 1 6.0258 2.2328 -0.8995 32 1 6.0246 2.2420 0.8805 33 1 8.3824 1.4755 0.8869 34 1 8.3843 1.4661 -0.8931 35 1 10.2611 1.7829 -2.7737 36 1 8.0871 5.1506 1.0714 37 1 7.6728 3.6691 1.9667 38 1 10.0622 3.0064 1.9759 39 1 10.4766 4.4880 1.0806 40 1 11.0138 5.3918 4.5940 41 1 4.1159 -2.1386 0.0119 42 1 1.2577 -2.8105 1.0419 43 1 0.4888 -2.3726 -0.5026 44 1 2.0284 -3.2657 -0.4967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600485491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:00 Heat of formation + Delta-G solvation = -65.001363 kcal Electronic energy + Delta-G solvation = -24193.629821 eV Core-core repulsion = 20623.043677 eV Total energy + Delta-G solvation = -3570.586144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.84244 -39.35601 -36.46291 -35.71400 -33.43581 -32.16524 -32.11963 -31.19227 -28.78707 -27.61163 -26.51331 -24.92780 -23.53899 -22.06645 -21.16939 -20.91521 -19.77537 -17.78361 -17.12500 -16.67496 -16.11916 -15.73154 -15.62120 -15.41276 -14.89985 -14.43553 -14.38957 -14.12227 -13.77169 -13.22220 -13.14306 -12.94208 -12.91213 -12.88044 -12.71743 -12.29710 -12.14126 -11.97773 -11.89720 -11.42482 -11.25284 -11.22514 -11.11616 -10.85532 -10.81618 -10.49539 -10.24300 -10.13588 -10.04451 -9.95067 -9.69425 -9.23652 -8.67600 -8.63923 -6.99319 -6.93862 -6.01481 -3.48065 1.31830 1.45032 1.95578 2.59852 2.95419 3.28846 3.38283 3.39810 3.49154 3.72665 4.37600 4.76609 4.84172 5.01961 5.06966 5.12705 5.31060 5.38073 5.39091 5.47305 5.56544 5.59306 5.69810 5.71863 5.73341 5.76425 5.76647 5.92923 6.05079 6.07502 6.14293 6.27792 6.35625 6.44281 6.45952 6.58552 6.66817 6.71481 6.76393 6.90194 7.02486 7.44808 7.67109 8.21709 8.28155 8.95194 9.59948 10.13312 11.00958 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010397 B = 0.003332 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.469315 B = 8400.422730 C = 9986.040508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.097 4.097 4 C -0.135 4.135 5 C -0.072 4.072 6 S -0.133 6.133 7 C -0.111 4.111 8 C 0.157 3.843 9 N -0.571 5.571 10 C -0.275 4.275 11 H 0.069 0.931 12 C 0.018 3.982 13 N -0.875 5.875 14 Si 0.894 3.106 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.159 3.841 19 C -0.132 4.132 20 C 0.479 3.521 21 O -0.528 6.528 22 O -0.524 6.524 23 C -0.105 4.105 24 C -0.074 4.074 25 C -0.115 4.115 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.112 0.888 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.398 0.602 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 -5.126 6.251 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.117 4.117 4 C -0.159 4.159 5 C -0.185 4.185 6 S 0.112 5.888 7 C -0.262 4.262 8 C 0.029 3.971 9 N -0.290 5.290 10 C -0.404 4.404 11 H 0.086 0.914 12 C -0.184 4.184 13 N -0.516 5.516 14 Si 0.722 3.278 15 H -0.210 1.210 16 H -0.212 1.212 17 H -0.203 1.203 18 C 0.031 3.969 19 C -0.172 4.172 20 C 0.323 3.677 21 O -0.417 6.417 22 O -0.335 6.335 23 C -0.129 4.129 24 C -0.075 4.075 25 C -0.171 4.171 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.256 0.744 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.497 -6.186 5.866 13.522 hybrid contribution -0.866 1.723 -0.336 1.958 sum -11.362 -4.462 5.530 13.401 Atomic orbital electron populations 1.20802 0.91506 1.02555 1.02004 1.19684 0.95755 0.92634 1.02805 1.20892 0.93660 0.97388 0.99750 1.21273 0.94694 0.97157 1.02799 1.21927 0.97943 0.96045 1.02624 1.85491 0.97405 1.14778 1.91152 1.24776 1.06046 0.91004 1.04343 1.20736 0.86887 0.86108 1.03412 1.43923 1.77526 1.06127 1.01391 1.19096 1.36606 0.96097 0.88643 0.91362 1.25017 0.95784 0.98440 0.99160 1.70030 1.28555 1.21810 1.31246 0.86473 0.78709 0.77934 0.84688 1.20993 1.21243 1.20300 1.20818 0.90744 0.97316 0.87986 1.22383 1.05107 1.00289 0.89453 1.24350 0.79506 0.77638 0.86253 1.90657 1.36993 1.45329 1.68738 1.84653 1.38534 1.70983 1.39321 1.20599 0.93085 0.96512 1.02687 1.19608 0.93104 0.94846 0.99988 1.20840 0.99959 0.94092 1.02230 0.91498 0.91852 0.91387 0.86080 0.85526 0.89697 0.91173 0.94657 0.87077 0.93079 0.92527 0.93537 0.88488 0.87353 0.74425 0.85779 0.91234 0.91220 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.60 36.01 0.35 -0.65 16 2 C -0.11 -1.29 5.88 -104.57 -0.62 -1.91 16 3 C -0.10 -1.30 9.69 -39.62 -0.38 -1.68 16 4 C -0.14 -2.10 9.36 -39.37 -0.37 -2.47 16 5 C -0.07 -1.17 6.11 -39.03 -0.24 -1.41 16 6 S -0.13 -2.37 21.92 -107.50 -2.36 -4.72 16 7 C -0.11 -2.13 4.66 37.15 0.17 -1.95 16 8 C 0.16 3.41 5.28 -4.04 -0.02 3.39 16 9 N -0.57 -13.00 2.47 -173.24 -0.43 -13.42 16 10 C -0.28 -6.94 9.48 -15.06 -0.14 -7.09 16 11 H 0.07 1.73 7.96 -52.49 -0.42 1.31 16 12 C 0.02 0.46 4.82 -17.43 -0.08 0.37 16 13 N -0.88 -23.38 11.44 55.49 0.64 -22.75 16 14 Si 0.89 20.50 29.63 -169.99 -5.04 15.47 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.16 3.17 4.98 -4.04 -0.02 3.15 16 19 C -0.13 -2.38 6.14 -27.88 -0.17 -2.55 16 20 C 0.48 7.93 8.33 36.01 0.30 8.23 16 21 O -0.53 -9.93 16.74 -18.75 -0.31 -10.24 16 22 O -0.52 -7.07 13.42 -39.24 -0.53 -7.59 16 23 C -0.10 -1.50 9.45 -39.37 -0.37 -1.87 16 24 C -0.07 -0.92 5.88 -104.66 -0.62 -1.53 16 25 C -0.11 -1.04 9.60 36.01 0.35 -0.69 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 2.00 5.88 -52.49 -0.31 1.69 16 31 H 0.08 1.73 7.75 -51.92 -0.40 1.33 16 32 H 0.07 1.28 7.75 -51.92 -0.40 0.88 16 33 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.11 2.77 5.31 -51.93 -0.28 2.49 16 35 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 36 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 37 H 0.05 0.89 8.03 -51.92 -0.42 0.47 16 38 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.40 3.43 9.10 45.56 0.41 3.85 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.53 5.94 -51.93 -0.31 0.23 16 44 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -29.04 379.13 -9.96 -39.00 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.77 Total: 7.21 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.87 Total: -8.66 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.21 Total: -36.17 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.84 Total: -17.83 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.04 Total: 15.47 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.36 Total: -4.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.04 -9.96 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600485491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds