Wall clock time and date at job start Tue Mar 31 2020 14:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31788 * 119.09469 * 2 1 4 4 C 1.32495 * 120.96309 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.40938 * 180.27380 * 4 3 2 6 6 C 1.38223 * 119.17818 * 359.97438 * 4 3 2 7 7 C 1.50695 * 120.82673 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47384 * 90.00251 * 7 6 4 9 9 O 1.21295 * 119.99560 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00560 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99494 * 359.97438 * 10 8 7 12 12 H 1.08001 * 120.00411 * 325.67757 * 11 10 8 13 13 C 1.38953 * 119.99528 * 145.67571 * 11 10 8 14 14 N 1.31411 * 120.00283 * 338.41042 * 13 11 10 15 15 Si 1.86802 * 119.99740 * 158.41282 * 13 11 10 16 16 H 1.48493 * 109.47454 * 90.00149 * 15 13 11 17 17 H 1.48504 * 109.46788 * 210.00351 * 15 13 11 18 18 H 1.48498 * 109.47086 * 329.99491 * 15 13 11 19 19 C 1.46494 * 120.00432 * 179.97438 * 10 8 7 20 20 C 1.52996 * 109.47344 * 85.55310 * 19 10 8 21 21 C 1.50706 * 109.47305 * 180.02562 * 20 19 10 22 22 O 1.20823 * 119.99807 * 0.02562 * 21 20 19 23 23 O 1.34227 * 120.00184 * 180.02562 * 21 20 19 24 24 C 1.39381 * 118.34919 * 0.02562 * 6 4 3 25 25 O 1.35522 * 120.50928 * 179.97438 * 24 6 4 26 26 N 1.31772 * 119.09276 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47294 * 269.99582 * 1 2 3 28 28 H 1.09001 * 109.47136 * 30.00130 * 1 2 3 29 29 H 1.08995 * 109.47311 * 149.99929 * 1 2 3 30 30 H 1.08998 * 109.47195 * 269.72302 * 5 4 3 31 31 H 1.09007 * 109.46963 * 29.72594 * 5 4 3 32 32 H 1.09002 * 109.47243 * 149.72153 * 5 4 3 33 33 H 1.09003 * 109.47413 * 209.99985 * 7 6 4 34 34 H 1.09004 * 109.47312 * 330.00283 * 7 6 4 35 35 H 0.96992 * 120.00026 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.47037 * 205.55830 * 19 10 8 37 37 H 1.09008 * 109.46884 * 325.55473 * 19 10 8 38 38 H 1.09004 * 109.47379 * 300.00334 * 20 19 10 39 39 H 1.09000 * 109.47245 * 60.00445 * 20 19 10 40 40 H 0.96701 * 117.00244 * 179.97438 * 23 21 20 41 41 H 0.96703 * 114.00183 * 90.00270 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4720 1.1948 -0.0005 5 6 4.1921 2.5186 0.0057 6 6 4.1849 0.0106 -0.0005 7 6 5.6918 0.0163 -0.0017 8 6 6.1953 0.0189 1.4187 9 8 5.4078 0.0167 2.3413 10 7 7.5205 0.0246 1.6641 11 6 8.4106 0.0276 0.6213 12 1 8.1760 -0.5014 -0.2906 13 6 9.6147 0.7113 0.7377 14 7 9.7392 1.6774 1.6197 15 14 11.0565 0.2570 -0.3597 16 1 11.0043 1.0640 -1.6051 17 1 12.3287 0.5319 0.3554 18 1 10.9829 -1.1863 -0.7016 19 6 8.0099 0.0276 3.0449 20 6 8.0809 -1.4099 3.5640 21 6 8.5838 -1.4067 4.9847 22 8 8.8569 -0.3619 5.5265 23 8 8.7283 -2.5646 5.6481 24 6 3.4753 -1.1891 -0.0005 25 8 4.1300 -2.3757 -0.0010 26 7 2.1477 -1.1515 -0.0005 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 4.3695 2.8405 -1.0204 31 1 3.5819 3.2616 0.5194 32 1 5.1456 2.4112 0.5228 33 1 6.0583 -0.8725 -0.5154 34 1 6.0514 0.9075 -0.5161 35 1 10.5798 2.1544 1.7011 36 1 9.0032 0.4751 3.0773 37 1 7.3300 0.6065 3.6700 38 1 7.0875 -1.8574 3.5315 39 1 8.7608 -1.9888 2.9389 40 1 9.0543 -2.5121 6.5569 41 1 4.3203 -2.7203 0.8822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600690846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:39 Heat of formation + Delta-G solvation = -123.319641 kcal Electronic energy + Delta-G solvation = -27915.821911 eV Core-core repulsion = 23796.413682 eV Total energy + Delta-G solvation = -4119.408229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10286 -39.89646 -38.69013 -37.44887 -35.90175 -35.25250 -34.47293 -32.52227 -32.05715 -31.02976 -29.84497 -28.74547 -26.15979 -25.31902 -23.74573 -22.74145 -21.57018 -20.51368 -19.26407 -18.52228 -17.86181 -17.75065 -16.95209 -16.35329 -15.99069 -15.72191 -15.45209 -14.86951 -14.66359 -14.41174 -14.17341 -13.85867 -13.41477 -13.24002 -13.05399 -12.86410 -12.81610 -12.56661 -12.39036 -12.28187 -12.03053 -11.91814 -11.63422 -11.41799 -11.30925 -11.20620 -11.00424 -10.86084 -10.53236 -10.37207 -10.20976 -10.12920 -10.01613 -9.34078 -9.03701 -8.94628 -8.49955 -7.77960 -6.54795 -4.25658 1.10563 1.24624 2.60098 3.00609 3.13415 3.15591 3.33248 3.49612 3.68256 3.91267 3.99642 4.13284 4.56495 4.66755 4.81786 5.11915 5.16615 5.34851 5.45125 5.51898 5.56120 5.68370 5.70046 5.78323 5.85939 5.88547 5.96089 6.11962 6.21275 6.24057 6.27718 6.33843 6.62097 6.74188 6.78924 7.18563 7.21227 7.33247 7.57702 7.67674 8.16187 8.24137 8.32312 8.88277 9.26844 9.69707 10.46014 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004327 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.301376 B = 6470.158501 C = 7712.319939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.326 3.674 3 N -0.527 5.527 4 C 0.200 3.800 5 C -0.108 4.108 6 C -0.166 4.166 7 C -0.076 4.076 8 C 0.472 3.528 9 O -0.604 6.604 10 N -0.432 5.432 11 C -0.353 4.353 12 H 0.095 0.905 13 C 0.047 3.953 14 N -0.849 5.849 15 Si 0.912 3.088 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.125 3.875 20 C -0.125 4.125 21 C 0.482 3.518 22 O -0.513 6.513 23 O -0.525 6.525 24 C 0.368 3.632 25 O -0.476 6.476 26 N -0.546 5.546 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.273 0.727 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.402 0.598 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -4.182 -1.579 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.244 5.244 4 C 0.055 3.945 5 C -0.166 4.166 6 C -0.172 4.172 7 C -0.117 4.117 8 C 0.261 3.739 9 O -0.490 6.490 10 N -0.149 5.149 11 C -0.480 4.480 12 H 0.113 0.887 13 C -0.161 4.161 14 N -0.484 5.484 15 Si 0.738 3.262 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.191 1.191 19 C 0.001 3.999 20 C -0.164 4.164 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.336 6.336 24 C 0.181 3.819 25 O -0.283 6.283 26 N -0.272 5.272 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.259 0.741 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.638 -3.752 -1.909 8.721 hybrid contribution 2.155 -0.436 0.610 2.282 sum -5.483 -4.188 -1.299 7.021 Atomic orbital electron populations 1.20504 0.85841 1.03774 1.03683 1.22850 0.97621 0.82414 0.91316 1.68051 1.09521 1.30181 1.16674 1.21456 0.88772 0.95582 0.88676 1.20824 1.00636 0.91708 1.03384 1.21250 0.98517 0.93337 1.04116 1.20282 0.88165 1.05611 0.97656 1.20201 0.83035 0.81055 0.89620 1.90567 1.55792 1.56493 1.46168 1.43403 1.03512 1.62668 1.05338 1.19466 0.98937 1.32937 0.96695 0.88723 1.25375 0.99801 0.93475 0.97402 1.69907 1.26611 1.17157 1.34698 0.86178 0.80624 0.79502 0.79932 1.20026 1.20635 1.19133 1.21234 1.04496 0.91264 0.82927 1.21851 1.02991 1.03650 0.87869 1.23763 0.73701 0.80551 0.89520 1.90708 1.46854 1.33149 1.69378 1.84586 1.79823 1.37153 1.32070 1.19142 0.86462 0.85457 0.90790 1.84600 1.74813 1.34531 1.34395 1.67689 1.09762 1.31898 1.17855 0.89846 0.89738 0.89916 0.89723 0.90039 0.89183 0.88201 0.87707 0.91608 0.86231 0.91759 0.88539 0.87749 0.74067 0.73292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.32 36.00 0.37 -0.52 16 2 C 0.33 5.27 7.64 -157.22 -1.20 4.07 16 3 N -0.53 -9.03 10.27 -7.05 -0.07 -9.10 16 4 C 0.20 3.49 6.82 -82.31 -0.56 2.93 16 5 C -0.11 -1.64 9.45 36.00 0.34 -1.30 16 6 C -0.17 -3.01 4.42 -104.20 -0.46 -3.47 16 7 C -0.08 -1.39 3.65 -29.04 -0.11 -1.50 16 8 C 0.47 10.17 7.27 -10.99 -0.08 10.09 16 9 O -0.60 -14.38 15.69 5.54 0.09 -14.29 16 10 N -0.43 -9.69 2.55 -114.81 -0.29 -9.98 16 11 C -0.35 -7.94 8.70 -14.93 -0.13 -8.07 16 12 H 0.10 2.00 6.98 -52.49 -0.37 1.64 16 13 C 0.05 1.08 4.94 -17.47 -0.09 1.00 16 14 N -0.85 -20.94 11.31 55.50 0.63 -20.31 16 15 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 C 0.12 2.80 4.21 -4.05 -0.02 2.78 16 20 C -0.12 -2.31 6.11 -27.88 -0.17 -2.48 16 21 C 0.48 8.52 8.33 36.01 0.30 8.82 16 22 O -0.51 -10.65 16.74 -18.75 -0.31 -10.96 16 23 O -0.52 -7.18 13.42 -39.25 -0.53 -7.71 16 24 C 0.37 6.56 7.81 -16.70 -0.13 6.43 16 25 O -0.48 -7.53 12.75 -18.26 -0.23 -7.76 16 26 N -0.55 -9.56 10.36 -10.78 -0.11 -9.68 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.52 6.54 -51.93 -0.34 1.18 16 33 H 0.10 1.73 7.13 -51.93 -0.37 1.36 16 34 H 0.10 1.85 6.78 -51.93 -0.35 1.49 16 35 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.12 2.94 5.29 -51.93 -0.27 2.67 16 37 H 0.06 1.57 7.52 -51.92 -0.39 1.18 16 38 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.40 3.59 9.10 45.56 0.41 4.01 16 41 H 0.41 5.12 9.06 45.56 0.41 5.53 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -31.47 357.39 -5.78 -37.25 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -3.36 Total: 15.55 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: -1.93 Total: 18.77 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.15 Total: -49.07 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.99 Total: -40.73 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.47 -5.78 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600690846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.070 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds