Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46732 * 299.99819 * 3 2 1 6 6 H 1.48497 * 109.47209 * 59.99280 * 3 2 1 7 7 C 1.37885 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00177 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00108 * 5.07464 * 11 10 9 13 13 N 1.34776 * 119.99881 * 185.07577 * 11 10 9 14 14 C 1.46921 * 120.62857 * 174.96910 * 13 11 10 15 15 C 1.53195 * 108.77372 * 233.58244 * 14 13 11 16 16 C 1.53041 * 109.34004 * 305.35015 * 15 14 13 17 17 C 1.50698 * 109.46011 * 181.40181 * 16 15 14 18 18 C 1.41261 * 126.70128 * 274.99373 * 17 16 15 19 19 C 1.36880 * 103.83830 * 180.02562 * 18 17 16 20 20 C 1.47380 * 126.94814 * 180.02562 * 19 18 17 21 21 O 1.21503 * 120.00018 * 359.97438 * 20 19 18 22 22 O 1.34782 * 119.99827 * 179.97438 * 20 19 18 23 23 O 1.34660 * 106.10167 * 359.97438 * 19 18 17 24 24 N 1.20889 * 111.46547 * 359.71507 * 23 19 18 25 25 C 1.53107 * 109.50435 * 61.34406 * 16 15 14 26 26 C 1.46926 * 120.63179 * 354.93940 * 13 11 10 27 27 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47408 * 59.99604 * 9 7 2 29 29 H 1.09004 * 109.46683 * 299.99395 * 9 7 2 30 30 H 0.96999 * 119.99772 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.59010 * 113.79942 * 14 13 11 32 32 H 1.08996 * 109.58662 * 353.36469 * 14 13 11 33 33 H 1.09001 * 109.49648 * 65.31322 * 15 14 13 34 34 H 1.08994 * 109.49996 * 185.37850 * 15 14 13 35 35 H 1.09010 * 109.46007 * 301.35937 * 16 15 14 36 36 H 1.07994 * 128.07778 * 0.02562 * 18 17 16 37 37 H 0.96702 * 116.99707 * 179.97438 * 22 20 19 38 38 H 1.09006 * 109.48620 * 178.70421 * 25 16 15 39 39 H 1.08999 * 109.51494 * 58.63430 * 25 16 15 40 40 H 1.09004 * 109.58879 * 246.20362 * 26 13 11 41 41 H 1.09001 * 109.58655 * 6.62662 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5622 -5.1070 -0.0916 13 7 2.6252 -5.9063 0.1043 14 6 2.1451 -7.2903 0.2170 15 6 2.7787 -7.9327 1.4550 16 6 4.3012 -7.8010 1.3713 17 6 4.9290 -8.4625 2.5710 18 6 5.1380 -7.8823 3.8420 19 6 5.7310 -8.8821 4.5647 20 6 6.1681 -8.8193 5.9708 21 8 6.0129 -7.7978 6.6101 22 8 6.7399 -9.8950 6.5474 23 8 5.8332 -9.9351 3.7315 24 7 5.3791 -9.6814 2.6403 25 6 4.6854 -6.3192 1.3450 26 6 4.0734 -5.6586 0.1057 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1566 -3.4355 0.0002 31 1 2.4326 -7.8504 -0.6729 32 1 1.0599 -7.2934 0.3186 33 1 2.4187 -7.4278 2.3514 34 1 2.5065 -8.9872 1.4973 35 1 4.6581 -8.2847 0.4619 36 1 4.8882 -6.8833 4.1673 37 1 7.0105 -9.8058 7.4715 38 1 5.7708 -6.2256 1.3086 39 1 4.3079 -5.8291 2.2424 40 1 4.5181 -6.0856 -0.7932 41 1 4.2605 -4.5851 0.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = -53.401740 kcal Electronic energy + Delta-G solvation = -26684.370668 eV Core-core repulsion = 22567.994307 eV Total energy + Delta-G solvation = -4116.376361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.52685 -40.62795 -40.01493 -37.78927 -36.81828 -34.93400 -34.28595 -32.81590 -32.47056 -31.72513 -31.07056 -27.36587 -25.86988 -25.62936 -23.71131 -23.42504 -22.37901 -21.34591 -20.72998 -19.16917 -18.92010 -18.31463 -18.26297 -18.00093 -16.53030 -16.08020 -16.04790 -15.77693 -15.14872 -14.80216 -14.71169 -14.48761 -14.18957 -14.11870 -13.96623 -13.51558 -13.23830 -13.08491 -12.48361 -12.27680 -12.25055 -11.95599 -11.78994 -11.55149 -11.50994 -11.42938 -11.23586 -10.93709 -10.92084 -10.87935 -10.46620 -10.29876 -10.18897 -9.40188 -9.34402 -8.74665 -8.47533 -7.75369 -6.16086 -4.22650 0.10303 1.54103 1.80926 2.12551 2.77608 3.11706 3.23502 3.30968 3.33809 3.45728 3.87686 4.08440 4.30094 4.38271 4.50378 4.57940 4.59925 4.74379 4.81999 4.94013 5.05434 5.15221 5.20183 5.30609 5.37809 5.48324 5.58548 5.63754 5.67803 5.70450 5.84575 5.94765 6.09562 6.72691 7.09463 7.10140 7.49716 7.52415 7.56648 7.60558 7.83927 8.01135 8.74548 8.88359 9.29959 9.46429 10.94194 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.002542 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.315080 B =11010.635550 C =12205.529837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.640 5.640 14 C 0.134 3.866 15 C -0.126 4.126 16 C -0.009 4.009 17 C 0.025 3.975 18 C -0.124 4.124 19 C -0.079 4.079 20 C 0.578 3.422 21 O -0.481 6.481 22 O -0.499 6.499 23 O 0.136 5.864 24 N -0.333 5.333 25 C -0.129 4.129 26 C 0.115 3.885 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.385 0.615 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.189 0.811 37 H 0.424 0.576 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.467 -20.228 8.797 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.383 5.383 11 C 0.399 3.601 12 O -0.476 6.476 13 N -0.380 5.380 14 C 0.010 3.990 15 C -0.165 4.165 16 C -0.028 4.028 17 C -0.132 4.132 18 C -0.145 4.145 19 C -0.143 4.143 20 C 0.419 3.581 21 O -0.368 6.368 22 O -0.312 6.312 23 O 0.058 5.942 24 N -0.030 5.030 25 C -0.168 4.168 26 C -0.009 4.009 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.220 0.780 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.206 0.794 37 H 0.285 0.715 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.276 -20.943 7.626 26.468 hybrid contribution 1.045 1.735 1.099 2.304 sum 15.321 -19.209 8.725 26.073 Atomic orbital electron populations 1.69988 1.06084 1.27160 1.48986 1.24947 0.94910 0.99401 0.94773 0.86368 0.79802 0.83016 0.77747 1.19658 1.20808 1.20816 1.21242 0.93227 0.90421 1.53048 0.91980 1.18995 0.87822 0.81115 0.97621 1.45893 1.10827 1.04441 1.77176 1.16055 0.84773 0.81059 0.78226 1.90863 1.14425 1.83816 1.58511 1.47319 1.05132 1.06040 1.79493 1.21297 1.00962 0.80726 0.95984 1.22019 0.92655 1.01571 1.00252 1.19664 0.95343 0.95269 0.92551 1.23689 1.01673 0.90361 0.97486 1.22975 0.98346 1.01428 0.91762 1.22678 1.09194 0.90174 0.92221 1.18729 0.74420 0.81067 0.83930 1.91040 1.52177 1.31484 1.62118 1.84610 1.72206 1.40222 1.34128 1.85098 1.58861 1.34967 1.15245 1.73793 1.11582 1.17570 1.00041 1.22036 1.01195 0.93409 1.00142 1.21527 0.81062 1.01215 0.97096 0.92509 0.95654 0.95818 0.77966 0.91993 0.88406 0.90786 0.90556 0.88611 0.79353 0.71531 0.90269 0.90454 0.91425 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.27 7.06 5.43 -5.20 -0.03 7.03 16 10 N -0.73 -15.46 5.46 -66.42 -0.36 -15.82 16 11 C 0.70 14.24 8.30 -86.92 -0.72 13.52 16 12 O -0.60 -14.77 15.79 5.29 0.08 -14.69 16 13 N -0.64 -9.37 2.97 -178.50 -0.53 -9.91 16 14 C 0.13 1.65 6.42 -3.71 -0.02 1.63 16 15 C -0.13 -1.24 5.34 -26.61 -0.14 -1.38 16 16 C -0.01 -0.08 2.62 -91.70 -0.24 -0.32 16 17 C 0.02 0.23 6.20 -82.17 -0.51 -0.28 16 18 C -0.12 -1.08 10.14 -38.93 -0.39 -1.47 16 19 C -0.08 -0.69 7.37 -36.35 -0.27 -0.96 16 20 C 0.58 4.57 8.33 34.45 0.29 4.85 16 21 O -0.48 -5.01 17.70 -19.27 -0.34 -5.35 16 22 O -0.50 -2.50 13.44 -41.45 -0.56 -3.06 16 23 O 0.14 1.31 11.23 15.50 0.17 1.48 16 24 N -0.33 -3.45 12.04 33.52 0.40 -3.05 16 25 C -0.13 -1.12 4.95 -26.58 -0.13 -1.25 16 26 C 0.12 1.24 6.43 -3.71 -0.02 1.21 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.39 6.97 5.78 -40.82 -0.24 6.73 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.42 7.03 -51.93 -0.37 1.05 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.19 1.43 7.70 -52.49 -0.40 1.03 16 37 H 0.42 0.00 9.11 45.56 0.42 0.42 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.72 7.57 -51.93 -0.39 0.33 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.97 5.57 -51.93 -0.29 0.68 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -35.57 352.85 -6.90 -42.47 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.19 Total: 2.84 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -2.61 Total: 9.34 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.25 Total: -54.06 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.64 Total: -21.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.57 -6.90 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.932 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds