Wall clock time and date at job start Tue Mar 31 2020 13:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47512 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46732 * 299.99819 * 3 2 1 6 6 H 1.48497 * 109.47209 * 59.99280 * 3 2 1 7 7 C 1.37885 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47215 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00177 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00108 * 5.07464 * 11 10 9 13 13 N 1.34776 * 119.99881 * 185.07577 * 11 10 9 14 14 C 1.46921 * 120.62857 * 174.96910 * 13 11 10 15 15 C 1.53195 * 108.77372 * 233.58244 * 14 13 11 16 16 C 1.53041 * 109.34004 * 305.35015 * 15 14 13 17 17 C 1.50698 * 109.46011 * 181.40181 * 16 15 14 18 18 C 1.41261 * 126.70128 * 274.99373 * 17 16 15 19 19 C 1.36880 * 103.83830 * 180.02562 * 18 17 16 20 20 C 1.47380 * 126.94814 * 180.02562 * 19 18 17 21 21 O 1.21503 * 120.00018 * 359.97438 * 20 19 18 22 22 O 1.34782 * 119.99827 * 179.97438 * 20 19 18 23 23 O 1.34660 * 106.10167 * 359.97438 * 19 18 17 24 24 N 1.20889 * 111.46547 * 359.71507 * 23 19 18 25 25 C 1.53107 * 109.50435 * 61.34406 * 16 15 14 26 26 C 1.46926 * 120.63179 * 354.93940 * 13 11 10 27 27 H 0.96996 * 119.99888 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47408 * 59.99604 * 9 7 2 29 29 H 1.09004 * 109.46683 * 299.99395 * 9 7 2 30 30 H 0.96999 * 119.99772 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.59010 * 113.79942 * 14 13 11 32 32 H 1.08996 * 109.58662 * 353.36469 * 14 13 11 33 33 H 1.09001 * 109.49648 * 65.31322 * 15 14 13 34 34 H 1.08994 * 109.49996 * 185.37850 * 15 14 13 35 35 H 1.09010 * 109.46007 * 301.35937 * 16 15 14 36 36 H 1.07994 * 128.07778 * 0.02562 * 18 17 16 37 37 H 0.96702 * 116.99707 * 179.97438 * 22 20 19 38 38 H 1.09006 * 109.48620 * 178.70421 * 25 16 15 39 39 H 1.08999 * 109.51494 * 58.63430 * 25 16 15 40 40 H 1.09004 * 109.58879 * 246.20362 * 26 13 11 41 41 H 1.09001 * 109.58655 * 6.62662 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5622 -5.1070 -0.0916 13 7 2.6252 -5.9063 0.1043 14 6 2.1451 -7.2903 0.2170 15 6 2.7787 -7.9327 1.4550 16 6 4.3012 -7.8010 1.3713 17 6 4.9290 -8.4625 2.5710 18 6 5.1380 -7.8823 3.8420 19 6 5.7310 -8.8821 4.5647 20 6 6.1681 -8.8193 5.9708 21 8 6.0129 -7.7978 6.6101 22 8 6.7399 -9.8950 6.5474 23 8 5.8332 -9.9351 3.7315 24 7 5.3791 -9.6814 2.6403 25 6 4.6854 -6.3192 1.3450 26 6 4.0734 -5.6586 0.1057 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 3.1566 -3.4355 0.0002 31 1 2.4326 -7.8504 -0.6729 32 1 1.0599 -7.2934 0.3186 33 1 2.4187 -7.4278 2.3514 34 1 2.5065 -8.9872 1.4973 35 1 4.6581 -8.2847 0.4619 36 1 4.8882 -6.8833 4.1673 37 1 7.0105 -9.8058 7.4715 38 1 5.7708 -6.2256 1.3086 39 1 4.3079 -5.8291 2.2424 40 1 4.5181 -6.0856 -0.7932 41 1 4.2605 -4.5851 0.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:48 Heat of formation + Delta-G solvation = -79.668699 kcal Electronic energy + Delta-G solvation = -26685.509689 eV Core-core repulsion = 22567.994307 eV Total energy + Delta-G solvation = -4117.515382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.23236 -41.36347 -41.21679 -38.98365 -37.36767 -36.20910 -35.90838 -34.42386 -33.45900 -32.76412 -32.06636 -29.25558 -26.95208 -26.32372 -24.86777 -24.51452 -23.76031 -22.31283 -21.56000 -20.63631 -19.78644 -19.24261 -18.96089 -18.86758 -18.01840 -17.29344 -17.20119 -16.67529 -16.56404 -16.49123 -15.53998 -15.45732 -15.26513 -14.90279 -14.82407 -14.76991 -14.53978 -14.40782 -14.03537 -13.69356 -13.36215 -12.94900 -12.84198 -12.80548 -12.74156 -12.48398 -12.27304 -12.17735 -12.15816 -12.07360 -11.71867 -11.42549 -11.20467 -11.07575 -10.93379 -10.80209 -10.03864 -9.38340 -8.27075 -6.43302 -0.55808 0.83770 1.22101 1.44698 1.46128 1.50162 1.59148 1.78894 2.18082 2.23511 2.39769 2.76733 3.08166 3.19089 3.41488 3.69767 3.77834 3.84297 3.94205 4.08187 4.16367 4.31233 4.36441 4.41879 4.62170 4.72880 4.77995 4.80141 4.86710 4.94804 5.06172 5.12044 5.27061 5.28789 5.31355 5.49802 5.61173 5.74965 5.86836 6.12986 6.67426 6.68692 6.92982 7.20563 7.27038 7.72203 8.85536 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.002542 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.315080 B =11010.635550 C =12205.529837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.649 6.649 13 N -0.628 5.628 14 C 0.130 3.870 15 C -0.116 4.116 16 C -0.002 4.002 17 C 0.026 3.974 18 C -0.127 4.127 19 C -0.080 4.080 20 C 0.588 3.412 21 O -0.510 6.510 22 O -0.491 6.491 23 O 0.132 5.868 24 N -0.348 5.348 25 C -0.122 4.122 26 C 0.108 3.892 27 H 0.268 0.732 28 H -0.016 1.016 29 H -0.016 1.016 30 H 0.403 0.597 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.198 0.802 37 H 0.446 0.554 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.750 -20.634 9.084 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.589 4.589 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.380 5.380 11 C 0.394 3.606 12 O -0.532 6.532 13 N -0.366 5.366 14 C 0.008 3.992 15 C -0.155 4.155 16 C -0.022 4.022 17 C -0.131 4.131 18 C -0.148 4.148 19 C -0.144 4.144 20 C 0.430 3.570 21 O -0.399 6.399 22 O -0.306 6.306 23 O 0.056 5.944 24 N -0.046 5.046 25 C -0.160 4.160 26 C -0.014 4.014 27 H 0.077 0.923 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.241 0.759 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.215 0.785 37 H 0.310 0.690 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.662 -21.433 7.941 28.885 hybrid contribution 0.036 1.697 1.044 1.993 sum 17.698 -19.736 8.984 27.990 Atomic orbital electron populations 1.70152 1.08295 1.28462 1.50075 1.26066 0.95767 1.03870 0.93933 0.85106 0.79167 0.77298 0.77605 1.17456 1.20553 1.20542 1.21607 0.94265 0.90380 1.52675 0.89805 1.18402 0.88144 0.83456 0.93834 1.45469 1.10868 1.03854 1.77776 1.16249 0.84765 0.81696 0.77871 1.90824 1.17113 1.84651 1.60612 1.47334 1.06304 1.05438 1.77547 1.21479 0.99683 0.79667 0.98417 1.21901 0.93568 1.01824 0.98194 1.19611 0.94075 0.95419 0.93058 1.23714 1.01494 0.90173 0.97690 1.23145 0.98197 1.01888 0.91615 1.22870 1.08940 0.89943 0.92628 1.18567 0.73918 0.81052 0.83499 1.91036 1.53571 1.32653 1.62660 1.84577 1.71313 1.38788 1.35953 1.85079 1.58953 1.35203 1.15213 1.73785 1.12236 1.18059 1.00478 1.21993 1.02557 0.92903 0.98596 1.21869 0.78313 1.01734 0.99521 0.92286 0.99821 0.99781 0.75891 0.89422 0.91242 0.92079 0.89190 0.87188 0.78512 0.68960 0.87613 0.91138 0.88651 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 42.06 29.54 68.60 2.03 44.08 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.90 9.28 25.60 0.24 -29.66 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.28 15.86 5.43 85.63 0.47 16.32 16 10 N -0.72 -31.27 5.46 -482.30 -2.63 -33.90 16 11 C 0.69 29.01 8.30 179.05 1.49 30.50 16 12 O -0.65 -33.83 15.79 -3.98 -0.06 -33.90 16 13 N -0.63 -17.90 2.97 -836.92 -2.49 -20.39 16 14 C 0.13 3.10 6.42 86.36 0.55 3.65 16 15 C -0.12 -2.10 5.34 30.67 0.16 -1.94 16 16 C 0.00 -0.04 2.62 -11.49 -0.03 -0.07 16 17 C 0.03 0.43 6.20 43.55 0.27 0.70 16 18 C -0.13 -1.99 10.14 22.69 0.23 -1.76 16 19 C -0.08 -1.27 7.37 24.36 0.18 -1.09 16 20 C 0.59 8.37 8.33 70.23 0.59 8.95 16 21 O -0.51 -10.00 17.70 19.83 0.35 -9.65 16 22 O -0.49 -3.89 13.44 -56.22 -0.76 -4.65 16 23 O 0.13 2.31 11.23 65.65 0.74 3.05 16 24 N -0.35 -6.49 12.04 -48.83 -0.59 -7.08 16 25 C -0.12 -1.75 4.95 30.69 0.15 -1.60 16 26 C 0.11 2.04 6.43 86.36 0.56 2.59 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.32 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 30 H 0.40 14.27 5.78 -92.71 -0.54 13.73 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.08 7.03 -2.39 -0.02 2.07 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.20 2.66 7.70 -2.91 -0.02 2.64 16 37 H 0.45 -1.02 9.11 -74.06 -0.67 -1.70 16 38 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.15 7.57 -2.39 -0.02 1.14 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.09 1.67 5.57 -2.39 -0.01 1.66 16 Total: -1.00 -80.55 352.85 2.07 -78.48 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.11 Total: 12.73 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 5.31 Total: 27.25 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -5.42 Total: -117.39 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: 0.27 Total: -45.14 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -80.55 2.07 -78.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.190 kcal (2) G-P(sol) polarization free energy of solvation -80.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds