Wall clock time and date at job start Tue Mar 31 2020 13:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48499 * 109.46759 * 269.99713 * 3 2 1 5 5 H 1.48497 * 109.47553 * 29.99576 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00321 * 3 2 1 7 7 C 1.39109 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00303 * 185.56064 * 7 2 1 9 9 N 1.36783 * 120.00097 * 5.55479 * 7 2 1 10 10 C 1.46505 * 119.99778 * 32.80180 * 9 7 2 11 11 C 1.50692 * 109.47169 * 263.03097 * 10 9 7 12 12 O 1.20822 * 120.00334 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99845 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00146 * 212.80618 * 9 7 2 15 15 O 1.21547 * 119.99980 * 184.82823 * 14 9 7 16 16 C 1.48165 * 120.00029 * 4.82439 * 14 9 7 17 17 C 1.42333 * 126.94832 * 175.47960 * 16 14 9 18 18 C 1.35274 * 103.92485 * 179.97438 * 17 16 14 19 19 C 1.50700 * 126.65388 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.46900 * 90.00357 * 19 18 17 21 21 C 1.48532 * 111.00224 * 52.60240 * 20 19 18 22 22 C 1.54934 * 103.22760 * 159.72182 * 21 20 19 23 23 C 1.54602 * 102.92095 * 322.58644 * 22 21 20 24 24 C 1.47903 * 110.99786 * 169.99906 * 20 19 18 25 25 O 1.34035 * 106.69536 * 0.02562 * 18 17 16 26 26 N 1.20910 * 111.85820 * 359.97438 * 25 18 17 27 27 H 0.97001 * 119.99482 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47089 * 23.03732 * 10 9 7 29 29 H 1.09005 * 109.46572 * 143.03004 * 10 9 7 30 30 H 0.96705 * 116.99913 * 180.02562 * 13 11 10 31 31 H 1.08001 * 128.03904 * 0.23949 * 17 16 14 32 32 H 1.09004 * 109.47206 * 210.00117 * 19 18 17 33 33 H 1.08999 * 109.47517 * 330.00364 * 19 18 17 34 34 H 1.08998 * 110.66728 * 278.15637 * 21 20 19 35 35 H 1.09003 * 110.66680 * 41.28740 * 21 20 19 36 36 H 1.09004 * 110.72225 * 204.23282 * 22 21 20 37 37 H 1.08995 * 110.72777 * 80.94000 * 22 21 20 38 38 H 1.09005 * 110.30629 * 263.04236 * 23 22 21 39 39 H 1.09004 * 110.30975 * 140.87775 * 23 22 21 40 40 H 1.08999 * 109.92212 * 333.50983 * 24 20 19 41 41 H 1.09009 * 109.91419 * 94.60592 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4947 2.0463 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5448 1.4401 0.7000 7 6 2.0087 -1.2047 0.0005 8 1 3.0849 -1.2070 0.0912 9 7 1.3296 -2.3866 -0.1136 10 6 0.1021 -2.4520 -0.9107 11 6 -1.0936 -2.3159 -0.0038 12 8 -0.9367 -2.1780 1.1862 13 8 -2.3331 -2.3470 -0.5182 14 6 1.7896 -3.4908 0.5073 15 8 1.2367 -4.5595 0.3354 16 6 2.9693 -3.4021 1.3993 17 6 3.5222 -4.4461 2.1931 18 6 4.5735 -3.8622 2.8125 19 6 5.5233 -4.5168 3.7823 20 7 6.6548 -5.0946 3.0449 21 6 7.2818 -4.0843 2.1548 22 6 8.6926 -4.6688 1.8935 23 6 9.0652 -5.2954 3.2569 24 6 7.7216 -5.5340 3.9704 25 8 4.6060 -2.5882 2.3974 26 7 3.7148 -2.3462 1.6169 27 1 -0.4849 0.8401 -0.0004 28 1 0.0990 -1.6421 -1.6402 29 1 0.0571 -3.4092 -1.4304 30 1 -3.0686 -2.2554 0.1030 31 1 3.1839 -5.4683 2.2775 32 1 5.8917 -3.7727 4.4885 33 1 5.0022 -5.3058 4.3248 34 1 6.7241 -3.9940 1.2227 35 1 7.3521 -3.1196 2.6573 36 1 9.3945 -3.8783 1.6277 37 1 8.6563 -5.4315 1.1157 38 1 9.6828 -4.6067 3.8336 39 1 9.5881 -6.2403 3.1088 40 1 7.6802 -4.9493 4.8894 41 1 7.6021 -6.5932 4.1988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:00 Heat of formation + Delta-G solvation = -33.074941 kcal Electronic energy + Delta-G solvation = -27959.561748 eV Core-core repulsion = 23844.066823 eV Total energy + Delta-G solvation = -4115.494925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.31838 -39.31030 -38.99861 -38.00772 -35.21666 -34.52024 -33.76734 -32.98943 -31.66371 -30.47345 -28.97541 -28.02472 -25.87137 -25.09055 -23.44235 -22.07581 -21.17719 -21.00875 -20.55887 -19.16392 -17.72372 -17.21902 -16.92612 -16.30229 -16.23899 -15.89801 -15.57273 -15.45871 -14.61081 -14.51784 -14.39627 -14.27394 -13.78074 -13.49821 -13.31850 -12.89906 -12.82000 -12.69548 -11.97345 -11.88947 -11.66681 -11.59964 -11.54198 -11.45420 -11.23691 -11.14072 -10.98762 -10.74450 -10.44598 -10.23539 -10.20485 -9.63527 -9.46154 -9.12712 -9.03315 -8.97411 -8.53937 -7.90965 -6.55465 -4.14534 1.87082 2.34813 3.12179 3.18106 3.24416 3.42449 3.70031 3.80164 3.95328 4.12482 4.33059 4.47202 4.48958 4.55416 4.78000 4.85046 4.97282 5.08994 5.14231 5.24165 5.36937 5.49666 5.57113 5.61005 5.68260 5.71526 5.83628 5.94753 5.97259 6.03530 6.09232 6.26294 6.47394 6.54970 6.64318 6.68344 6.78110 7.40908 7.52840 7.65793 8.27279 8.76897 8.95911 9.19768 9.27280 9.62797 10.52180 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003707 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.989949 B = 7552.153497 C = 8629.719904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.044 3.956 3 Si 0.932 3.068 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.327 4.327 8 H 0.120 0.880 9 N -0.406 5.406 10 C 0.158 3.842 11 C 0.500 3.500 12 O -0.503 6.503 13 O -0.537 6.537 14 C 0.536 3.464 15 O -0.592 6.592 16 C 0.008 3.992 17 C -0.163 4.163 18 C -0.067 4.067 19 C 0.136 3.864 20 N -0.513 5.513 21 C 0.032 3.968 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.035 3.965 25 O 0.097 5.903 26 N -0.300 5.300 27 H 0.274 0.726 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.391 0.609 31 H 0.171 0.829 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.132 -5.973 4.523 14.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.163 4.163 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.137 0.863 9 N -0.124 5.124 10 C 0.033 3.967 11 C 0.340 3.660 12 O -0.387 6.387 13 O -0.348 6.348 14 C 0.325 3.675 15 O -0.477 6.477 16 C -0.150 4.150 17 C -0.186 4.186 18 C -0.130 4.130 19 C 0.007 3.993 20 N -0.239 5.239 21 C -0.095 4.095 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.093 4.093 25 O 0.025 5.975 26 N -0.003 5.003 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.104 0.896 30 H 0.247 0.753 31 H 0.188 0.812 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.809 -5.536 3.733 13.566 hybrid contribution -0.265 1.083 1.219 1.652 sum 11.544 -4.453 4.952 13.328 Atomic orbital electron populations 1.69580 1.06371 1.28262 1.46199 1.25501 0.95365 1.00389 0.95015 0.85824 0.79705 0.80212 0.78478 1.20090 1.20820 1.18747 1.20135 0.93073 0.81793 1.50585 0.86283 1.43140 1.20194 1.08875 1.40175 1.20386 0.81170 1.02977 0.92194 1.23388 0.82997 0.70874 0.88760 1.90564 1.85643 1.44588 1.17954 1.84502 1.17318 1.86727 1.46231 1.16977 0.83944 0.84990 0.81561 1.90633 1.61582 1.29055 1.66448 1.23374 0.99461 0.89630 1.02570 1.22297 0.96238 1.01292 0.98734 1.23898 1.00228 0.85744 1.03129 1.20601 0.90202 0.97107 0.91353 1.64953 1.06520 1.34728 1.17661 1.23285 0.94605 0.93653 0.97980 1.22477 0.95959 1.00329 0.97392 1.22397 0.96701 1.01285 0.96467 1.22894 0.90399 1.01467 0.94511 1.84866 1.40761 1.26868 1.44983 1.74678 0.98926 1.21635 1.05076 0.91507 0.86333 0.89630 0.75287 0.81164 0.92427 0.87562 0.89802 0.93015 0.90982 0.90676 0.91505 0.90987 0.93488 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.90 8.71 55.50 0.48 -22.41 16 2 C 0.04 1.12 5.16 -17.45 -0.09 1.03 16 3 Si 0.93 20.27 29.56 -169.99 -5.02 15.24 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.33 -8.60 8.26 -15.02 -0.12 -8.73 16 8 H 0.12 3.10 5.60 -52.49 -0.29 2.81 16 9 N -0.41 -10.66 2.15 -117.06 -0.25 -10.92 16 10 C 0.16 3.81 5.16 -5.19 -0.03 3.78 16 11 C 0.50 12.32 6.35 36.00 0.23 12.55 16 12 O -0.50 -14.24 16.12 -18.75 -0.30 -14.54 16 13 O -0.54 -10.79 13.42 -39.26 -0.53 -11.32 16 14 C 0.54 14.07 7.39 -12.18 -0.09 13.98 16 15 O -0.59 -16.16 16.62 5.32 0.09 -16.07 16 16 C 0.01 0.19 6.91 -82.54 -0.57 -0.38 16 17 C -0.16 -3.08 10.92 -39.06 -0.43 -3.51 16 18 C -0.07 -1.08 5.74 -35.36 -0.20 -1.29 16 19 C 0.14 1.59 5.59 -4.97 -0.03 1.56 16 20 N -0.51 -5.85 5.39 -231.89 -1.25 -7.10 16 21 C 0.03 0.37 5.43 -1.90 -0.01 0.36 16 22 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 23 C -0.13 -1.00 6.93 -25.37 -0.18 -1.18 16 24 C 0.03 0.30 6.69 -2.75 -0.02 0.28 16 25 O 0.10 1.82 10.98 17.19 0.19 2.01 16 26 N -0.30 -6.75 8.87 33.29 0.30 -6.45 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.12 2.79 7.02 -51.93 -0.36 2.42 16 29 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 30 H 0.39 6.14 9.10 45.56 0.41 6.56 16 31 H 0.17 2.94 8.06 -52.49 -0.42 2.52 16 32 H 0.06 0.59 7.81 -51.93 -0.41 0.19 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.15 7.90 -51.93 -0.41 0.74 16 35 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.36 7.57 -51.93 -0.39 -0.03 16 41 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -33.61 346.57 -7.14 -40.75 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.36 Total: 8.40 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -1.71 Total: 17.18 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.72 Total: -46.88 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.55 Total: -39.92 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.61 -7.14 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.677 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds