Wall clock time and date at job start Tue Mar 31 2020 13:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48499 * 109.46759 * 269.99713 * 3 2 1 5 5 H 1.48497 * 109.47553 * 29.99576 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00321 * 3 2 1 7 7 C 1.39109 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00303 * 185.56064 * 7 2 1 9 9 N 1.36783 * 120.00097 * 5.55479 * 7 2 1 10 10 C 1.46505 * 119.99778 * 32.80180 * 9 7 2 11 11 C 1.50692 * 109.47169 * 263.03097 * 10 9 7 12 12 O 1.20822 * 120.00334 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99845 * 179.97438 * 11 10 9 14 14 C 1.34777 * 120.00146 * 212.80618 * 9 7 2 15 15 O 1.21547 * 119.99980 * 184.82823 * 14 9 7 16 16 C 1.48165 * 120.00029 * 4.82439 * 14 9 7 17 17 C 1.42333 * 126.94832 * 175.47960 * 16 14 9 18 18 C 1.35274 * 103.92485 * 179.97438 * 17 16 14 19 19 C 1.50700 * 126.65388 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.46900 * 90.00357 * 19 18 17 21 21 C 1.48532 * 111.00224 * 52.60240 * 20 19 18 22 22 C 1.54934 * 103.22760 * 159.72182 * 21 20 19 23 23 C 1.54602 * 102.92095 * 322.58644 * 22 21 20 24 24 C 1.47903 * 110.99786 * 169.99906 * 20 19 18 25 25 O 1.34035 * 106.69536 * 0.02562 * 18 17 16 26 26 N 1.20910 * 111.85820 * 359.97438 * 25 18 17 27 27 H 0.97001 * 119.99482 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47089 * 23.03732 * 10 9 7 29 29 H 1.09005 * 109.46572 * 143.03004 * 10 9 7 30 30 H 0.96705 * 116.99913 * 180.02562 * 13 11 10 31 31 H 1.08001 * 128.03904 * 0.23949 * 17 16 14 32 32 H 1.09004 * 109.47206 * 210.00117 * 19 18 17 33 33 H 1.08999 * 109.47517 * 330.00364 * 19 18 17 34 34 H 1.08998 * 110.66728 * 278.15637 * 21 20 19 35 35 H 1.09003 * 110.66680 * 41.28740 * 21 20 19 36 36 H 1.09004 * 110.72225 * 204.23282 * 22 21 20 37 37 H 1.08995 * 110.72777 * 80.94000 * 22 21 20 38 38 H 1.09005 * 110.30629 * 263.04236 * 23 22 21 39 39 H 1.09004 * 110.30975 * 140.87775 * 23 22 21 40 40 H 1.08999 * 109.92212 * 333.50983 * 24 20 19 41 41 H 1.09009 * 109.91419 * 94.60592 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4947 2.0463 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5448 1.4401 0.7000 7 6 2.0087 -1.2047 0.0005 8 1 3.0849 -1.2070 0.0912 9 7 1.3296 -2.3866 -0.1136 10 6 0.1021 -2.4520 -0.9107 11 6 -1.0936 -2.3159 -0.0038 12 8 -0.9367 -2.1780 1.1862 13 8 -2.3331 -2.3470 -0.5182 14 6 1.7896 -3.4908 0.5073 15 8 1.2367 -4.5595 0.3354 16 6 2.9693 -3.4021 1.3993 17 6 3.5222 -4.4461 2.1931 18 6 4.5735 -3.8622 2.8125 19 6 5.5233 -4.5168 3.7823 20 7 6.6548 -5.0946 3.0449 21 6 7.2818 -4.0843 2.1548 22 6 8.6926 -4.6688 1.8935 23 6 9.0652 -5.2954 3.2569 24 6 7.7216 -5.5340 3.9704 25 8 4.6060 -2.5882 2.3974 26 7 3.7148 -2.3462 1.6169 27 1 -0.4849 0.8401 -0.0004 28 1 0.0990 -1.6421 -1.6402 29 1 0.0571 -3.4092 -1.4304 30 1 -3.0686 -2.2554 0.1030 31 1 3.1839 -5.4683 2.2775 32 1 5.8917 -3.7727 4.4885 33 1 5.0022 -5.3058 4.3248 34 1 6.7241 -3.9940 1.2227 35 1 7.3521 -3.1196 2.6573 36 1 9.3945 -3.8783 1.6277 37 1 8.6563 -5.4315 1.1157 38 1 9.6828 -4.6067 3.8336 39 1 9.5881 -6.2403 3.1088 40 1 7.6802 -4.9493 4.8894 41 1 7.6021 -6.5932 4.1988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:59 Heat of formation + Delta-G solvation = -57.206949 kcal Electronic energy + Delta-G solvation = -27960.608190 eV Core-core repulsion = 23844.066823 eV Total energy + Delta-G solvation = -4116.541368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.94733 -41.24916 -39.94954 -39.79520 -37.13454 -36.46130 -35.04146 -34.46184 -33.62023 -31.66550 -29.95771 -29.68990 -27.20038 -26.78029 -25.20513 -23.57532 -22.54921 -21.99059 -21.67188 -21.02639 -19.36681 -18.83360 -18.72544 -18.05964 -17.72991 -17.47954 -16.81833 -16.59687 -16.41845 -16.22338 -16.17788 -15.43743 -15.29877 -15.10996 -14.63278 -14.39312 -14.03135 -13.79315 -13.55618 -13.48930 -13.31254 -13.01063 -12.83712 -12.77364 -12.45715 -12.19794 -12.18997 -12.12418 -11.99359 -11.95197 -11.46523 -11.37844 -11.26418 -11.09201 -10.95519 -10.46689 -9.89355 -9.40477 -8.49995 -6.16059 0.31370 0.74824 1.39442 1.41971 1.53352 1.76404 1.95945 2.13580 2.27975 2.50996 2.69187 3.03848 3.09977 3.33628 3.60366 3.76677 3.93226 4.06139 4.14760 4.25189 4.28769 4.39437 4.44472 4.57897 4.62126 4.67826 4.71022 4.78087 4.83432 4.95691 5.01658 5.02401 5.11741 5.22823 5.35582 5.42548 5.58812 5.86204 5.92003 5.97856 6.28662 6.90429 7.14368 7.38749 7.40712 7.65652 8.57239 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003707 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.989949 B = 7552.153497 C = 8629.719904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.005 3.995 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.345 4.345 8 H 0.117 0.883 9 N -0.417 5.417 10 C 0.152 3.848 11 C 0.505 3.495 12 O -0.546 6.546 13 O -0.520 6.520 14 C 0.522 3.478 15 O -0.616 6.616 16 C -0.029 4.029 17 C -0.177 4.177 18 C -0.035 4.035 19 C 0.137 3.863 20 N -0.527 5.527 21 C 0.028 3.972 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.034 3.966 25 O 0.112 5.888 26 N -0.325 5.325 27 H 0.275 0.725 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.413 0.587 31 H 0.184 0.816 32 H 0.080 0.920 33 H 0.130 0.870 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.026 -5.982 5.808 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.134 0.866 9 N -0.134 5.134 10 C 0.028 3.972 11 C 0.347 3.653 12 O -0.434 6.434 13 O -0.333 6.333 14 C 0.312 3.688 15 O -0.503 6.503 16 C -0.186 4.186 17 C -0.200 4.200 18 C -0.098 4.098 19 C 0.009 3.991 20 N -0.253 5.253 21 C -0.100 4.100 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.093 4.093 25 O 0.037 5.963 26 N -0.025 5.025 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.273 0.727 31 H 0.201 0.799 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.656 -5.542 4.972 15.554 hybrid contribution -0.829 1.003 0.857 1.558 sum 12.827 -4.539 5.829 14.802 Atomic orbital electron populations 1.69668 1.07394 1.28829 1.46610 1.26309 0.96156 1.03101 0.94319 0.84899 0.78138 0.76140 0.79102 1.18411 1.20865 1.18962 1.20280 0.93205 0.82228 1.51599 0.86622 1.43337 1.20710 1.08989 1.40377 1.20501 0.80906 1.03648 0.92182 1.23398 0.84129 0.69714 0.88026 1.90541 1.86503 1.46787 1.19594 1.84428 1.16690 1.85852 1.46322 1.17457 0.84810 0.84746 0.81739 1.90576 1.62653 1.29646 1.67416 1.23344 0.99758 0.91585 1.03905 1.22467 0.97136 1.01347 0.99046 1.24627 0.99461 0.84046 1.01674 1.20899 0.89799 0.98122 0.90295 1.64953 1.07351 1.34415 1.18599 1.23259 0.95794 0.94120 0.96839 1.22465 0.94629 1.00489 0.98342 1.22407 0.96534 1.02065 0.95343 1.23004 0.89672 1.02193 0.94462 1.84809 1.39396 1.28275 1.43832 1.74629 0.99618 1.22113 1.06175 0.91504 0.86076 0.88412 0.72741 0.79899 0.90176 0.85199 0.92850 0.93008 0.89937 0.91298 0.90155 0.89866 0.91989 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.27 8.71 21.69 0.19 -47.08 16 2 C 0.00 0.24 5.16 84.98 0.44 0.68 16 3 Si 0.99 41.56 29.56 68.60 2.03 43.59 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.34 -18.55 8.26 84.13 0.69 -17.85 16 8 H 0.12 6.19 5.60 -2.91 -0.02 6.18 16 9 N -0.42 -22.55 2.15 -642.56 -1.38 -23.93 16 10 C 0.15 7.52 5.16 85.63 0.44 7.97 16 11 C 0.51 25.20 6.35 71.23 0.45 25.66 16 12 O -0.55 -31.55 16.12 21.98 0.35 -31.20 16 13 O -0.52 -20.59 13.42 -51.43 -0.69 -21.28 16 14 C 0.52 28.38 7.39 86.88 0.64 29.02 16 15 O -0.62 -34.71 16.62 -3.86 -0.06 -34.77 16 16 C -0.03 -1.38 6.91 42.92 0.30 -1.09 16 17 C -0.18 -6.70 10.92 22.60 0.25 -6.45 16 18 C -0.03 -1.08 5.74 25.00 0.14 -0.94 16 19 C 0.14 2.80 5.59 85.56 0.48 3.28 16 20 N -0.53 -10.72 5.39 -887.55 -4.78 -15.50 16 21 C 0.03 0.60 5.43 86.65 0.47 1.07 16 22 C -0.12 -1.97 7.06 31.80 0.22 -1.74 16 23 C -0.13 -1.52 6.93 31.47 0.22 -1.30 16 24 C 0.03 0.46 6.69 86.44 0.58 1.04 16 25 O 0.11 4.18 10.98 71.70 0.79 4.97 16 26 N -0.32 -14.87 8.87 -49.48 -0.44 -15.31 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.12 5.81 7.02 -2.39 -0.02 5.80 16 29 H 0.10 4.48 7.57 -2.38 -0.02 4.46 16 30 H 0.41 12.50 9.10 -74.05 -0.67 11.83 16 31 H 0.18 6.30 8.06 -2.91 -0.02 6.27 16 32 H 0.08 1.33 7.81 -2.39 -0.02 1.32 16 33 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 35 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.69 7.57 -2.39 -0.02 0.67 16 41 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -74.42 346.57 1.74 -72.68 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.41 Total: 28.50 kcal Atomic # 6 Polarization: 34.01 SS G_CDS: 5.33 Total: 39.34 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -6.42 Total: -101.82 kcal Atomic # 8 Polarization: -82.67 SS G_CDS: 0.39 Total: -82.28 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.42 1.74 -72.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.477 kcal (2) G-P(sol) polarization free energy of solvation -74.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds