Wall clock time and date at job start Tue Mar 31 2020 13:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46749 * 269.99556 * 3 2 1 5 5 H 1.48491 * 109.47330 * 29.99794 * 3 2 1 6 6 H 1.48498 * 109.47128 * 149.99902 * 3 2 1 7 7 C 1.39025 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99730 * 206.38895 * 7 2 1 9 9 N 1.36902 * 120.00105 * 26.39722 * 7 2 1 10 10 C 1.46506 * 120.00069 * 18.23325 * 9 7 2 11 11 C 1.50700 * 109.47121 * 267.16089 * 10 9 7 12 12 O 1.20828 * 119.99819 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99916 * 198.23395 * 9 7 2 15 15 O 1.21601 * 120.00082 * 3.22108 * 14 9 7 16 16 C 1.47614 * 120.00052 * 183.21904 * 14 9 7 17 17 C 1.41543 * 126.52298 * 176.05183 * 16 14 9 18 18 C 1.35351 * 105.49949 * 179.97438 * 17 16 14 19 19 N 1.35051 * 107.24292 * 0.25666 * 18 17 16 20 20 C 1.46505 * 124.87938 * 179.70078 * 19 18 17 21 21 C 1.53179 * 109.54245 * 34.55615 * 20 19 18 22 22 C 1.53094 * 109.16307 * 183.14784 * 21 20 19 23 23 O 1.42907 * 109.40829 * 57.61245 * 22 21 20 24 24 C 1.42900 * 114.10172 * 298.83916 * 23 22 21 25 25 C 1.53095 * 109.41417 * 61.15846 * 24 23 22 26 26 N 1.28465 * 110.23876 * 359.55482 * 19 18 17 27 27 H 0.97003 * 119.99826 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46747 * 27.16682 * 10 9 7 29 29 H 1.09002 * 109.46931 * 147.16089 * 10 9 7 30 30 H 0.96702 * 116.99788 * 179.97438 * 13 11 10 31 31 H 1.07994 * 127.25497 * 359.93738 * 17 16 14 32 32 H 1.08003 * 126.38013 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.53802 * 154.82341 * 20 19 18 34 34 H 1.08993 * 109.52652 * 303.05766 * 21 20 19 35 35 H 1.09003 * 109.52032 * 63.25140 * 21 20 19 36 36 H 1.08995 * 109.47962 * 297.63343 * 22 21 20 37 37 H 1.09001 * 109.47973 * 177.59448 * 22 21 20 38 38 H 1.09001 * 109.48082 * 301.17997 * 24 23 22 39 39 H 1.08994 * 109.48277 * 181.14477 * 24 23 22 40 40 H 1.08997 * 109.52170 * 182.48408 * 25 24 23 41 41 H 1.09005 * 109.56951 * 62.32766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4954 2.0462 -1.4001 5 1 1.4453 2.6526 0.6999 6 1 3.5453 1.4401 0.7000 7 6 2.0088 -1.2040 0.0005 8 1 3.0044 -1.2526 0.4163 9 7 1.4313 -2.3280 -0.5261 10 6 0.2860 -2.2075 -1.4316 11 6 -0.9927 -2.3018 -0.6397 12 8 -0.9515 -2.4535 0.5583 13 8 -2.1773 -2.2161 -1.2651 14 6 1.9164 -3.5454 -0.2114 15 8 2.8290 -3.6489 0.5855 16 6 1.3398 -4.7533 -0.8341 17 6 1.7901 -6.0846 -0.6657 18 6 0.9635 -6.8443 -1.4218 19 7 0.0785 -6.0102 -2.0090 20 6 -0.9907 -6.4288 -2.9189 21 6 -1.5265 -7.7966 -2.4850 22 6 -2.5877 -8.2613 -3.4860 23 8 -2.0162 -8.3112 -4.7949 24 6 -1.5410 -7.0511 -5.2726 25 6 -0.4379 -6.5378 -4.3433 26 7 0.3069 -4.7973 -1.6526 27 1 -0.4850 0.8401 -0.0004 28 1 0.3268 -1.2458 -1.9429 29 1 0.3180 -3.0115 -2.1670 30 1 -2.9699 -2.2824 -0.7150 31 1 2.6189 -6.4229 -0.0617 32 1 1.0064 -7.9173 -1.5373 33 1 -1.7970 -5.6957 -2.8957 34 1 -0.7090 -8.5170 -2.4602 35 1 -1.9720 -7.7155 -1.4935 36 1 -3.4234 -7.5617 -3.4807 37 1 -2.9419 -9.2533 -3.2059 38 1 -2.3631 -6.3356 -5.2907 39 1 -1.1413 -7.1713 -6.2795 40 1 -0.1047 -5.5564 -4.6808 41 1 0.4024 -7.2320 -4.3558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:50 Heat of formation + Delta-G solvation = -63.154489 kcal Electronic energy + Delta-G solvation = -28684.450157 eV Core-core repulsion = 24567.650885 eV Total energy + Delta-G solvation = -4116.799272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31904 -39.59020 -39.06829 -37.80057 -35.11735 -34.82281 -34.30525 -31.88743 -31.61875 -30.59121 -30.06612 -27.51379 -25.89862 -24.62011 -24.04915 -22.09135 -21.85057 -20.88193 -19.83311 -19.01175 -17.53489 -16.99657 -16.77765 -16.48138 -16.22246 -15.99073 -15.59060 -15.35639 -15.12911 -14.73378 -14.34990 -14.08394 -13.97847 -13.85965 -13.31417 -13.08251 -12.87253 -12.75481 -12.45106 -11.84167 -11.78556 -11.77354 -11.65614 -11.59265 -11.23611 -11.01314 -10.84436 -10.44742 -10.36082 -10.23324 -10.11369 -9.83847 -9.44691 -8.98797 -8.79637 -8.66056 -8.54685 -7.84491 -6.45793 -3.84514 2.16749 2.63554 2.66781 3.20292 3.25469 3.31411 3.46366 3.77591 3.97492 4.08970 4.20981 4.30880 4.47506 4.52389 4.62751 4.72376 4.79133 4.85104 5.00985 5.12494 5.19843 5.20267 5.26889 5.30365 5.36839 5.55540 5.64046 5.78267 5.80228 6.14553 6.20704 6.33066 6.52772 6.67732 6.75177 6.92922 7.17673 7.53774 7.68943 8.03343 8.34105 8.48427 9.09928 9.22076 9.38082 9.90962 10.61446 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003974 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.915647 B = 7044.577630 C = 7677.191216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.033 3.967 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.111 0.889 9 N -0.409 5.409 10 C 0.138 3.862 11 C 0.502 3.498 12 O -0.501 6.501 13 O -0.539 6.539 14 C 0.526 3.474 15 O -0.572 6.572 16 C 0.023 3.977 17 C -0.187 4.187 18 C -0.025 4.025 19 N -0.293 5.293 20 C 0.152 3.848 21 C -0.166 4.166 22 C 0.067 3.933 23 O -0.381 6.381 24 C 0.065 3.935 25 C -0.167 4.167 26 N -0.281 5.281 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.387 0.613 31 H 0.156 0.844 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -13.687 -11.945 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.437 4.437 8 H 0.128 0.872 9 N -0.126 5.126 10 C 0.011 3.989 11 C 0.342 3.658 12 O -0.386 6.386 13 O -0.349 6.349 14 C 0.314 3.686 15 O -0.454 6.454 16 C -0.138 4.138 17 C -0.216 4.216 18 C -0.167 4.167 19 N -0.079 5.079 20 C 0.050 3.950 21 C -0.205 4.205 22 C -0.011 4.011 23 O -0.300 6.300 24 C -0.012 4.012 25 C -0.206 4.206 26 N -0.115 5.115 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.243 0.757 31 H 0.174 0.826 32 H 0.188 0.812 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.623 -13.124 -12.136 19.433 hybrid contribution 0.141 0.654 1.130 1.314 sum -7.482 -12.470 -11.006 18.237 Atomic orbital electron populations 1.69917 1.06258 1.27870 1.45682 1.25317 0.95141 1.00171 0.96566 0.85901 0.79759 0.80532 0.78434 1.20163 1.21074 1.19113 1.19746 1.00385 0.84232 1.39332 0.87174 1.43299 1.25297 1.04978 1.39060 1.20921 0.81877 1.04487 0.91613 1.23443 0.84190 0.70620 0.87533 1.90587 1.86808 1.44982 1.16213 1.84506 1.17004 1.86998 1.46440 1.16723 0.86620 0.80908 0.84354 1.90617 1.32700 1.85052 1.37045 1.22553 0.95400 0.96229 0.99581 1.21713 1.03356 0.91694 1.04820 1.22593 0.94861 0.97865 1.01409 1.45625 1.24106 1.03991 1.34200 1.21425 0.88338 0.97302 0.87916 1.22620 1.01029 0.95725 1.01122 1.22560 0.94006 1.02665 0.81851 1.87961 1.79167 1.31033 1.31830 1.22592 0.95416 0.85586 0.97604 1.22665 1.00189 1.03901 0.93813 1.73710 1.18737 1.02246 1.16773 0.91906 0.87587 0.86965 0.75746 0.82613 0.81158 0.87379 0.89670 0.89477 0.92426 0.87923 0.92362 0.87972 0.89338 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.44 9.13 55.50 0.51 -22.93 16 2 C 0.03 0.89 4.73 -17.45 -0.08 0.81 16 3 Si 0.93 20.67 29.63 -169.99 -5.04 15.63 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.82 9.25 -15.00 -0.14 -8.96 16 8 H 0.11 3.25 7.46 -52.49 -0.39 2.86 16 9 N -0.41 -11.08 2.12 -117.25 -0.25 -11.33 16 10 C 0.14 3.28 4.82 -5.19 -0.03 3.26 16 11 C 0.50 12.12 5.82 36.01 0.21 12.33 16 12 O -0.50 -14.22 16.36 -18.75 -0.31 -14.52 16 13 O -0.54 -10.52 13.42 -39.25 -0.53 -11.05 16 14 C 0.53 14.17 7.56 -12.44 -0.09 14.08 16 15 O -0.57 -16.94 16.60 5.28 0.09 -16.85 16 16 C 0.02 0.51 6.84 -82.77 -0.57 -0.06 16 17 C -0.19 -3.43 10.81 -39.35 -0.43 -3.86 16 18 C -0.02 -0.35 10.54 -17.16 -0.18 -0.53 16 19 N -0.29 -4.37 3.23 -54.65 -0.18 -4.54 16 20 C 0.15 1.62 3.16 -67.74 -0.21 1.40 16 21 C -0.17 -1.35 5.09 -26.59 -0.14 -1.49 16 22 C 0.07 0.46 6.84 37.21 0.25 0.71 16 23 O -0.38 -3.29 10.77 -35.23 -0.38 -3.67 16 24 C 0.07 0.48 6.84 37.21 0.25 0.74 16 25 C -0.17 -1.51 5.75 -26.59 -0.15 -1.66 16 26 N -0.28 -5.42 7.97 33.42 0.27 -5.15 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.11 2.54 6.85 -51.93 -0.36 2.19 16 29 H 0.11 2.42 5.06 -51.93 -0.26 2.15 16 30 H 0.39 5.98 9.10 45.56 0.41 6.39 16 31 H 0.16 2.69 8.06 -52.49 -0.42 2.26 16 32 H 0.17 1.70 7.08 -52.48 -0.37 1.33 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.65 6.90 -51.93 -0.36 0.30 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -37.12 342.54 -6.21 -43.33 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.26 Total: 9.15 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -1.30 Total: 16.77 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.35 Total: -43.96 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.13 Total: -46.09 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.04 Total: 15.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.12 -6.21 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.825 kcal (2) G-P(sol) polarization free energy of solvation -37.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds