Wall clock time and date at job start Tue Mar 31 2020 13:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48501 * 109.46749 * 269.99556 * 3 2 1 5 5 H 1.48491 * 109.47330 * 29.99794 * 3 2 1 6 6 H 1.48498 * 109.47128 * 149.99902 * 3 2 1 7 7 C 1.39025 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99730 * 206.38895 * 7 2 1 9 9 N 1.36902 * 120.00105 * 26.39722 * 7 2 1 10 10 C 1.46506 * 120.00069 * 18.23325 * 9 7 2 11 11 C 1.50700 * 109.47121 * 267.16089 * 10 9 7 12 12 O 1.20828 * 119.99819 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99916 * 198.23395 * 9 7 2 15 15 O 1.21601 * 120.00082 * 3.22108 * 14 9 7 16 16 C 1.47614 * 120.00052 * 183.21904 * 14 9 7 17 17 C 1.41543 * 126.52298 * 176.05183 * 16 14 9 18 18 C 1.35351 * 105.49949 * 179.97438 * 17 16 14 19 19 N 1.35051 * 107.24292 * 0.25666 * 18 17 16 20 20 C 1.46505 * 124.87938 * 179.70078 * 19 18 17 21 21 C 1.53179 * 109.54245 * 34.55615 * 20 19 18 22 22 C 1.53094 * 109.16307 * 183.14784 * 21 20 19 23 23 O 1.42907 * 109.40829 * 57.61245 * 22 21 20 24 24 C 1.42900 * 114.10172 * 298.83916 * 23 22 21 25 25 C 1.53095 * 109.41417 * 61.15846 * 24 23 22 26 26 N 1.28465 * 110.23876 * 359.55482 * 19 18 17 27 27 H 0.97003 * 119.99826 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46747 * 27.16682 * 10 9 7 29 29 H 1.09002 * 109.46931 * 147.16089 * 10 9 7 30 30 H 0.96702 * 116.99788 * 179.97438 * 13 11 10 31 31 H 1.07994 * 127.25497 * 359.93738 * 17 16 14 32 32 H 1.08003 * 126.38013 * 180.02562 * 18 17 16 33 33 H 1.08996 * 109.53802 * 154.82341 * 20 19 18 34 34 H 1.08993 * 109.52652 * 303.05766 * 21 20 19 35 35 H 1.09003 * 109.52032 * 63.25140 * 21 20 19 36 36 H 1.08995 * 109.47962 * 297.63343 * 22 21 20 37 37 H 1.09001 * 109.47973 * 177.59448 * 22 21 20 38 38 H 1.09001 * 109.48082 * 301.17997 * 24 23 22 39 39 H 1.08994 * 109.48277 * 181.14477 * 24 23 22 40 40 H 1.08997 * 109.52170 * 182.48408 * 25 24 23 41 41 H 1.09005 * 109.56951 * 62.32766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4954 2.0462 -1.4001 5 1 1.4453 2.6526 0.6999 6 1 3.5453 1.4401 0.7000 7 6 2.0088 -1.2040 0.0005 8 1 3.0044 -1.2526 0.4163 9 7 1.4313 -2.3280 -0.5261 10 6 0.2860 -2.2075 -1.4316 11 6 -0.9927 -2.3018 -0.6397 12 8 -0.9515 -2.4535 0.5583 13 8 -2.1773 -2.2161 -1.2651 14 6 1.9164 -3.5454 -0.2114 15 8 2.8290 -3.6489 0.5855 16 6 1.3398 -4.7533 -0.8341 17 6 1.7901 -6.0846 -0.6657 18 6 0.9635 -6.8443 -1.4218 19 7 0.0785 -6.0102 -2.0090 20 6 -0.9907 -6.4288 -2.9189 21 6 -1.5265 -7.7966 -2.4850 22 6 -2.5877 -8.2613 -3.4860 23 8 -2.0162 -8.3112 -4.7949 24 6 -1.5410 -7.0511 -5.2726 25 6 -0.4379 -6.5378 -4.3433 26 7 0.3069 -4.7973 -1.6526 27 1 -0.4850 0.8401 -0.0004 28 1 0.3268 -1.2458 -1.9429 29 1 0.3180 -3.0115 -2.1670 30 1 -2.9699 -2.2824 -0.7150 31 1 2.6189 -6.4229 -0.0617 32 1 1.0064 -7.9173 -1.5373 33 1 -1.7970 -5.6957 -2.8957 34 1 -0.7090 -8.5170 -2.4602 35 1 -1.9720 -7.7155 -1.4935 36 1 -3.4234 -7.5617 -3.4807 37 1 -2.9419 -9.2533 -3.2059 38 1 -2.3631 -6.3356 -5.2907 39 1 -1.1413 -7.1713 -6.2795 40 1 -0.1047 -5.5564 -4.6808 41 1 0.4024 -7.2320 -4.3558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:50 Heat of formation + Delta-G solvation = -90.796392 kcal Electronic energy + Delta-G solvation = -28685.648800 eV Core-core repulsion = 24567.650885 eV Total energy + Delta-G solvation = -4117.997915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.67078 -41.07050 -40.23318 -39.70877 -37.03247 -36.30737 -35.76137 -33.89498 -32.27146 -31.82732 -31.42422 -29.45376 -27.52400 -25.95594 -24.70363 -23.67279 -22.92647 -22.65891 -20.85651 -20.65002 -19.09988 -18.68047 -18.57980 -17.83823 -17.47373 -17.12481 -16.87830 -16.71449 -16.41928 -16.17799 -15.93966 -15.74993 -15.20884 -14.95921 -14.71817 -14.50101 -14.39436 -13.98526 -13.69329 -13.57168 -13.44919 -13.36740 -12.78504 -12.59474 -12.46167 -12.36778 -12.16723 -12.12111 -11.94985 -11.56198 -11.48576 -11.39986 -10.98789 -10.79778 -10.64851 -10.16010 -10.00640 -9.84601 -8.50489 -5.99602 0.64003 1.22934 1.40450 1.44941 1.50157 1.56360 1.86202 2.17413 2.36236 2.60022 2.92070 2.93500 3.15884 3.26320 3.57000 3.69334 3.86180 3.88132 3.90846 4.18383 4.22736 4.34754 4.49779 4.51219 4.60602 4.63051 4.71404 4.77817 4.80941 4.85352 4.94180 4.98222 5.00263 5.10820 5.40175 5.40660 5.91284 5.97333 6.03010 6.20974 6.34460 6.94633 7.05339 7.23943 7.50884 7.87389 8.55933 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003974 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.915647 B = 7044.577630 C = 7677.191216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.003 3.997 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.084 0.916 9 N -0.421 5.421 10 C 0.142 3.858 11 C 0.513 3.487 12 O -0.549 6.549 13 O -0.520 6.520 14 C 0.512 3.488 15 O -0.620 6.620 16 C -0.022 4.022 17 C -0.211 4.211 18 C 0.010 3.990 19 N -0.277 5.277 20 C 0.139 3.861 21 C -0.160 4.160 22 C 0.067 3.933 23 O -0.394 6.394 24 C 0.069 3.931 25 C -0.161 4.161 26 N -0.289 5.289 27 H 0.276 0.724 28 H 0.101 0.899 29 H 0.135 0.865 30 H 0.409 0.591 31 H 0.157 0.843 32 H 0.224 0.776 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 -15.120 -14.082 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.201 4.201 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.101 0.899 9 N -0.138 5.138 10 C 0.016 3.984 11 C 0.355 3.645 12 O -0.438 6.438 13 O -0.332 6.332 14 C 0.302 3.698 15 O -0.505 6.505 16 C -0.180 4.180 17 C -0.239 4.239 18 C -0.134 4.134 19 N -0.064 5.064 20 C 0.040 3.960 21 C -0.198 4.198 22 C -0.010 4.010 23 O -0.313 6.313 24 C -0.009 4.009 25 C -0.199 4.199 26 N -0.125 5.125 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.152 0.848 30 H 0.268 0.732 31 H 0.174 0.826 32 H 0.241 0.759 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.505 -14.548 -14.324 22.520 hybrid contribution 0.535 0.963 1.711 2.035 sum -8.970 -13.585 -12.613 20.593 Atomic orbital electron populations 1.69982 1.07331 1.28944 1.45179 1.26192 0.95991 1.02851 0.95066 0.84872 0.77911 0.75791 0.79323 1.18020 1.20236 1.19770 1.19723 1.00217 0.86086 1.42094 0.89859 1.43456 1.26139 1.04859 1.39393 1.20991 0.81137 1.04943 0.91370 1.23356 0.85217 0.69248 0.86676 1.90571 1.87660 1.47371 1.18193 1.84422 1.16728 1.86059 1.45993 1.17458 0.86064 0.82292 0.83993 1.90541 1.34657 1.86162 1.39186 1.22021 0.97781 0.95716 1.02451 1.21896 1.04802 0.90698 1.06489 1.23177 0.92262 0.99579 0.98352 1.46128 1.24224 1.02854 1.33145 1.21935 0.87155 0.98809 0.88129 1.22640 1.01749 0.93925 1.01510 1.22694 0.93551 1.03997 0.80776 1.87959 1.79242 1.31507 1.32542 1.22652 0.95062 0.85447 0.97696 1.22632 1.00892 1.03583 0.92831 1.73486 1.17865 1.04708 1.16428 0.91368 0.88098 0.84848 0.73209 0.82553 0.75918 0.87636 0.88526 0.89422 0.91671 0.85986 0.91506 0.86532 0.90304 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.39 9.13 21.68 0.20 -48.19 16 2 C 0.00 0.14 4.73 84.95 0.40 0.55 16 3 Si 1.00 43.03 29.63 68.60 2.03 45.06 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.35 -21.28 9.25 84.09 0.78 -20.50 16 8 H 0.08 5.30 7.46 -2.91 -0.02 5.28 16 9 N -0.42 -24.00 2.12 -643.12 -1.37 -25.37 16 10 C 0.14 6.90 4.82 85.63 0.41 7.31 16 11 C 0.51 24.94 5.82 71.24 0.41 25.36 16 12 O -0.55 -31.90 16.36 21.96 0.36 -31.54 16 13 O -0.52 -19.61 13.42 -51.39 -0.69 -20.30 16 14 C 0.51 29.24 7.56 86.72 0.66 29.90 16 15 O -0.62 -39.39 16.60 -4.04 -0.07 -39.45 16 16 C -0.02 -0.98 6.84 42.43 0.29 -0.69 16 17 C -0.21 -7.69 10.81 22.42 0.24 -7.45 16 18 C 0.01 0.26 10.54 83.53 0.88 1.14 16 19 N -0.28 -7.67 3.23 -326.81 -1.05 -8.72 16 20 C 0.14 2.56 3.16 45.11 0.14 2.70 16 21 C -0.16 -1.97 5.09 30.69 0.16 -1.81 16 22 C 0.07 0.66 6.84 72.01 0.49 1.15 16 23 O -0.39 -5.32 10.77 -148.98 -1.60 -6.92 16 24 C 0.07 0.78 6.84 72.01 0.49 1.28 16 25 C -0.16 -2.44 5.75 30.68 0.18 -2.26 16 26 N -0.29 -11.05 7.97 -48.19 -0.38 -11.44 16 27 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.10 4.94 6.85 -2.39 -0.02 4.92 16 29 H 0.13 5.83 5.06 -2.39 -0.01 5.82 16 30 H 0.41 11.86 9.10 -74.06 -0.67 11.18 16 31 H 0.16 5.52 8.06 -2.91 -0.02 5.50 16 32 H 0.22 3.29 7.08 -2.91 -0.02 3.27 16 33 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.10 1.00 6.90 -2.39 -0.02 0.98 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -86.07 342.54 3.37 -82.70 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.41 Total: 27.50 kcal Atomic # 6 Polarization: 31.13 SS G_CDS: 5.54 Total: 36.67 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.61 Total: -93.72 kcal Atomic # 8 Polarization: -96.21 SS G_CDS: -2.00 Total: -98.21 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -86.07 3.37 -82.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.094 kcal (2) G-P(sol) polarization free energy of solvation -86.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds