Wall clock time and date at job start Tue Mar 31 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46999 * 299.99987 * 3 2 1 6 6 H 1.48499 * 109.47002 * 60.00102 * 3 2 1 7 7 C 1.38984 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00156 * 184.62812 * 7 2 1 9 9 N 1.36982 * 119.99722 * 4.62671 * 7 2 1 10 10 C 1.46507 * 119.99982 * 304.99293 * 9 7 2 11 11 C 1.53000 * 109.47043 * 264.88045 * 10 9 7 12 12 C 1.50702 * 109.46873 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00189 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.34776 * 120.00014 * 124.99428 * 9 7 2 16 16 O 1.21629 * 119.99600 * 183.30711 * 15 9 7 17 17 C 1.47349 * 120.00016 * 3.31050 * 15 9 7 18 18 C 1.38113 * 126.42128 * 352.52807 * 17 15 9 19 19 N 1.34284 * 107.40457 * 180.02562 * 18 17 15 20 20 H 0.97003 * 125.75189 * 180.02562 * 19 18 17 21 21 N 1.39931 * 108.49571 * 359.75316 * 19 18 17 22 22 C 1.30444 * 108.91874 * 0.42271 * 21 19 18 23 23 C 1.50694 * 125.98920 * 179.85161 * 22 21 19 24 24 H 1.09003 * 110.27547 * 194.05830 * 23 22 21 25 25 C 1.54943 * 110.39630 * 71.90862 * 23 22 21 26 26 C 1.55451 * 100.98768 * 204.64653 * 25 23 22 27 27 C 1.54380 * 102.18774 * 34.03880 * 26 25 23 28 28 O 1.43237 * 107.66455 * 338.73854 * 27 26 25 29 29 H 0.96996 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47020 * 24.87608 * 10 9 7 31 31 H 1.09003 * 109.47016 * 144.87799 * 10 9 7 32 32 H 1.09000 * 109.46856 * 299.99663 * 11 10 9 33 33 H 1.09003 * 109.47415 * 59.99999 * 11 10 9 34 34 H 0.96699 * 117.00327 * 179.97438 * 14 12 11 35 35 H 1.08001 * 126.30113 * 0.05529 * 18 17 15 36 36 H 1.09001 * 111.12483 * 322.51705 * 25 23 22 37 37 H 1.09001 * 111.12386 * 86.63665 * 25 23 22 38 38 H 1.09003 * 110.83503 * 275.88510 * 26 25 23 39 39 H 1.09009 * 110.92178 * 152.22612 * 26 25 23 40 40 H 1.09000 * 109.83006 * 219.18291 * 27 26 25 41 41 H 1.09002 * 109.82922 * 98.30047 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0091 -1.2036 -0.0005 8 1 3.0863 -1.2052 0.0749 9 7 1.3274 -2.3879 -0.0968 10 6 0.2612 -2.6992 0.8586 11 6 0.8303 -3.5434 2.0007 12 6 -0.2666 -3.8641 2.9831 13 8 -1.3882 -3.4586 2.7899 14 8 0.0025 -4.6001 4.0728 15 6 1.6376 -3.2668 -1.0703 16 8 0.9930 -4.2909 -1.1930 17 6 2.7577 -2.9871 -1.9859 18 6 3.4813 -1.8131 -2.0617 19 7 4.4065 -1.9728 -3.0217 20 1 5.0595 -1.3097 -3.2955 21 7 4.2741 -3.2591 -3.5563 22 6 3.2926 -3.8695 -2.9515 23 6 2.8168 -5.2721 -3.2293 24 1 1.8437 -5.4393 -2.7674 25 6 3.8456 -6.3052 -2.7048 26 6 3.5300 -7.5256 -3.6144 27 6 3.1330 -6.8477 -4.9434 28 8 2.7425 -5.5022 -4.6452 29 1 -0.4850 0.8400 0.0004 30 1 -0.1481 -1.7725 1.2609 31 1 -0.5281 -3.2560 0.3535 32 1 1.2396 -4.4701 1.5985 33 1 1.6196 -2.9866 2.5058 34 1 -0.7332 -4.7795 4.6741 35 1 3.3310 -0.9294 -1.4593 36 1 4.8666 -5.9557 -2.8586 37 1 3.6671 -6.5394 -1.6554 38 1 2.6995 -8.1051 -3.2112 39 1 4.4128 -8.1512 -3.7466 40 1 2.2988 -7.3829 -5.3968 41 1 3.9837 -6.8435 -5.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:05 Heat of formation + Delta-G solvation = -89.820239 kcal Electronic energy + Delta-G solvation = -28108.239936 eV Core-core repulsion = 23990.284350 eV Total energy + Delta-G solvation = -4117.955586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79587 -39.79756 -38.82275 -38.13793 -35.78703 -34.97129 -32.19062 -32.05403 -31.62791 -30.99328 -29.04747 -28.28048 -25.45325 -24.22382 -23.09944 -21.65652 -21.44217 -20.50883 -19.38583 -19.15430 -18.19690 -17.63567 -16.27596 -16.18006 -15.90813 -15.76274 -15.60988 -15.36612 -14.60773 -14.49222 -14.26866 -14.13748 -13.47452 -13.22141 -13.05879 -12.81320 -12.70101 -12.48920 -12.36668 -11.78898 -11.53054 -11.38191 -11.25065 -11.18573 -11.15954 -11.14284 -10.78628 -10.67224 -10.53418 -10.32001 -10.12071 -10.07846 -9.41349 -9.04528 -8.91991 -8.53575 -8.00800 -7.44069 -6.50104 -4.44676 2.36388 2.67867 2.72926 2.97863 3.02625 3.08790 3.29655 3.45844 3.89757 4.20578 4.54109 4.65072 4.81433 4.82996 4.98576 5.06715 5.28753 5.44417 5.58726 5.61319 5.78178 5.81241 5.83396 5.87507 5.99749 6.05443 6.09473 6.18978 6.32906 6.41341 6.44524 6.58647 6.83108 6.90011 7.08263 7.17725 7.32422 7.38811 7.75748 7.96947 8.14944 8.21205 8.31819 8.87748 9.41709 9.85617 10.50885 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.005208 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.066760 B = 5374.661050 C = 7591.610210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.054 3.946 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.441 5.441 10 C 0.136 3.864 11 C -0.126 4.126 12 C 0.482 3.518 13 O -0.514 6.514 14 O -0.526 6.526 15 C 0.563 3.437 16 O -0.599 6.599 17 C -0.252 4.252 18 C 0.105 3.895 19 N -0.483 5.483 20 H 0.435 0.565 21 N -0.300 5.300 22 C 0.117 3.883 23 C 0.156 3.844 24 H 0.122 0.878 25 C -0.142 4.142 26 C -0.154 4.154 27 C 0.053 3.947 28 O -0.374 6.374 29 H 0.274 0.726 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.401 0.599 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -6.245 0.432 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.109 0.891 9 N -0.159 5.159 10 C 0.012 3.988 11 C -0.165 4.165 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.353 3.647 16 O -0.485 6.485 17 C -0.266 4.266 18 C -0.044 4.044 19 N -0.189 5.189 20 H 0.278 0.722 21 N -0.123 5.123 22 C -0.052 4.052 23 C 0.097 3.903 24 H 0.139 0.861 25 C -0.180 4.180 26 C -0.192 4.192 27 C -0.024 4.024 28 O -0.293 6.293 29 H 0.085 0.915 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.258 0.742 35 H 0.233 0.767 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.928 -6.346 -0.979 10.202 hybrid contribution -0.272 1.273 1.118 1.716 sum 7.656 -5.073 0.139 9.185 Atomic orbital electron populations 1.69793 1.06165 1.28086 1.44011 1.25716 0.95437 0.99708 0.94644 0.86265 0.79824 0.82352 0.78699 1.18880 1.20093 1.20099 1.19371 0.91749 0.82528 1.55009 0.89126 1.42975 1.32806 1.16303 1.23815 1.21137 0.90025 0.99800 0.87833 1.21929 0.96092 1.03356 0.95155 1.23816 0.90114 0.73613 0.79985 1.90707 1.24505 1.50111 1.74791 1.84592 1.45996 1.67756 1.35388 1.17602 0.83050 0.84111 0.79927 1.90548 1.54685 1.29224 1.74036 1.20168 1.05110 0.94975 1.06377 1.25113 0.88029 1.01153 0.90098 1.46344 1.29358 1.12986 1.30185 0.72221 1.76928 1.21417 0.91800 1.22143 1.22052 0.93247 0.95836 0.94084 1.21591 1.00001 0.87268 0.81417 0.86067 1.23266 0.99843 0.94280 1.00632 1.23137 1.02200 0.98203 0.95627 1.23046 0.99252 0.83357 0.96750 1.88472 1.88609 1.28919 1.23272 0.91531 0.87297 0.91728 0.88439 0.87926 0.74180 0.76650 0.90480 0.89511 0.90321 0.90270 0.91682 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.18 11.47 55.50 0.64 -20.54 16 2 C 0.05 1.24 5.34 -17.45 -0.09 1.14 16 3 Si 0.90 17.04 29.06 -169.99 -4.94 12.10 16 4 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.36 -8.00 6.31 -14.97 -0.09 -8.10 16 8 H 0.09 1.87 5.92 -52.49 -0.31 1.56 16 9 N -0.44 -10.29 2.45 -116.04 -0.28 -10.57 16 10 C 0.14 3.10 4.15 -4.04 -0.02 3.09 16 11 C -0.13 -2.35 6.10 -27.88 -0.17 -2.52 16 12 C 0.48 8.52 8.33 36.01 0.30 8.82 16 13 O -0.51 -10.68 16.74 -18.75 -0.31 -10.99 16 14 O -0.53 -7.20 13.42 -39.25 -0.53 -7.73 16 15 C 0.56 13.36 7.59 -12.55 -0.10 13.27 16 16 O -0.60 -15.05 14.32 5.25 0.08 -14.98 16 17 C -0.25 -5.43 6.03 -105.06 -0.63 -6.06 16 18 C 0.11 1.96 10.28 -16.52 -0.17 1.79 16 19 N -0.48 -7.93 7.29 30.87 0.22 -7.70 16 20 H 0.43 5.24 8.96 -182.72 -1.64 3.61 16 21 N -0.30 -5.73 12.63 33.90 0.43 -5.31 16 22 C 0.12 2.37 6.21 -82.01 -0.51 1.87 16 23 C 0.16 2.91 3.77 -26.86 -0.10 2.81 16 24 H 0.12 2.51 5.86 -51.93 -0.30 2.20 16 25 C -0.14 -2.09 6.56 -24.40 -0.16 -2.25 16 26 C -0.15 -1.82 7.03 -24.71 -0.17 -2.00 16 27 C 0.05 0.71 7.79 37.88 0.30 1.01 16 28 O -0.37 -6.89 11.03 -35.23 -0.39 -7.28 16 29 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 30 H 0.11 2.70 6.04 -51.93 -0.31 2.39 16 31 H 0.06 1.61 7.49 -51.93 -0.39 1.22 16 32 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.40 3.59 9.10 45.56 0.41 4.00 16 35 H 0.22 3.89 4.22 -52.49 -0.22 3.67 16 36 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -31.66 346.18 -6.77 -38.43 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -5.27 Total: 16.49 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -1.62 Total: 12.87 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 1.01 Total: -44.12 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.15 Total: -40.98 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -4.94 Total: 12.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.66 -6.77 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.387 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds