Wall clock time and date at job start Tue Mar 31 2020 13:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46999 * 299.99987 * 3 2 1 6 6 H 1.48499 * 109.47002 * 60.00102 * 3 2 1 7 7 C 1.38984 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00156 * 184.62812 * 7 2 1 9 9 N 1.36982 * 119.99722 * 4.62671 * 7 2 1 10 10 C 1.46507 * 119.99982 * 304.99293 * 9 7 2 11 11 C 1.53000 * 109.47043 * 264.88045 * 10 9 7 12 12 C 1.50702 * 109.46873 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00189 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.34776 * 120.00014 * 124.99428 * 9 7 2 16 16 O 1.21629 * 119.99600 * 183.30711 * 15 9 7 17 17 C 1.47349 * 120.00016 * 3.31050 * 15 9 7 18 18 C 1.38113 * 126.42128 * 352.52807 * 17 15 9 19 19 N 1.34284 * 107.40457 * 180.02562 * 18 17 15 20 20 H 0.97003 * 125.75189 * 180.02562 * 19 18 17 21 21 N 1.39931 * 108.49571 * 359.75316 * 19 18 17 22 22 C 1.30444 * 108.91874 * 0.42271 * 21 19 18 23 23 C 1.50694 * 125.98920 * 179.85161 * 22 21 19 24 24 H 1.09003 * 110.27547 * 194.05830 * 23 22 21 25 25 C 1.54943 * 110.39630 * 71.90862 * 23 22 21 26 26 C 1.55451 * 100.98768 * 204.64653 * 25 23 22 27 27 C 1.54380 * 102.18774 * 34.03880 * 26 25 23 28 28 O 1.43237 * 107.66455 * 338.73854 * 27 26 25 29 29 H 0.96996 * 119.99955 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47020 * 24.87608 * 10 9 7 31 31 H 1.09003 * 109.47016 * 144.87799 * 10 9 7 32 32 H 1.09000 * 109.46856 * 299.99663 * 11 10 9 33 33 H 1.09003 * 109.47415 * 59.99999 * 11 10 9 34 34 H 0.96699 * 117.00327 * 179.97438 * 14 12 11 35 35 H 1.08001 * 126.30113 * 0.05529 * 18 17 15 36 36 H 1.09001 * 111.12483 * 322.51705 * 25 23 22 37 37 H 1.09001 * 111.12386 * 86.63665 * 25 23 22 38 38 H 1.09003 * 110.83503 * 275.88510 * 26 25 23 39 39 H 1.09009 * 110.92178 * 152.22612 * 26 25 23 40 40 H 1.09000 * 109.83006 * 219.18291 * 27 26 25 41 41 H 1.09002 * 109.82922 * 98.30047 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0091 -1.2036 -0.0005 8 1 3.0863 -1.2052 0.0749 9 7 1.3274 -2.3879 -0.0968 10 6 0.2612 -2.6992 0.8586 11 6 0.8303 -3.5434 2.0007 12 6 -0.2666 -3.8641 2.9831 13 8 -1.3882 -3.4586 2.7899 14 8 0.0025 -4.6001 4.0728 15 6 1.6376 -3.2668 -1.0703 16 8 0.9930 -4.2909 -1.1930 17 6 2.7577 -2.9871 -1.9859 18 6 3.4813 -1.8131 -2.0617 19 7 4.4065 -1.9728 -3.0217 20 1 5.0595 -1.3097 -3.2955 21 7 4.2741 -3.2591 -3.5563 22 6 3.2926 -3.8695 -2.9515 23 6 2.8168 -5.2721 -3.2293 24 1 1.8437 -5.4393 -2.7674 25 6 3.8456 -6.3052 -2.7048 26 6 3.5300 -7.5256 -3.6144 27 6 3.1330 -6.8477 -4.9434 28 8 2.7425 -5.5022 -4.6452 29 1 -0.4850 0.8400 0.0004 30 1 -0.1481 -1.7725 1.2609 31 1 -0.5281 -3.2560 0.3535 32 1 1.2396 -4.4701 1.5985 33 1 1.6196 -2.9866 2.5058 34 1 -0.7332 -4.7795 4.6741 35 1 3.3310 -0.9294 -1.4593 36 1 4.8666 -5.9557 -2.8586 37 1 3.6671 -6.5394 -1.6554 38 1 2.6995 -8.1051 -3.2112 39 1 4.4128 -8.1512 -3.7466 40 1 2.2988 -7.3829 -5.3968 41 1 3.9837 -6.8435 -5.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:04 Heat of formation + Delta-G solvation = -113.388987 kcal Electronic energy + Delta-G solvation = -28109.261954 eV Core-core repulsion = 23990.284350 eV Total energy + Delta-G solvation = -4118.977604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30415 -41.24064 -40.09027 -39.86433 -37.16694 -36.73098 -33.90198 -33.44268 -32.83712 -32.68421 -30.61070 -29.55307 -27.21452 -25.87625 -24.39240 -23.21521 -22.50638 -21.99685 -21.06391 -20.65613 -19.79707 -19.02354 -17.71233 -17.54168 -17.51802 -17.27888 -16.91477 -16.84572 -16.09969 -15.99687 -15.84617 -15.69296 -15.04380 -14.55593 -14.42748 -14.30118 -14.22217 -13.98336 -13.76157 -13.46852 -12.99662 -12.81119 -12.66844 -12.59854 -12.52362 -12.42900 -12.22515 -12.00201 -11.87962 -11.80594 -11.75087 -11.60342 -10.83338 -10.70070 -10.46549 -10.15898 -9.62032 -9.22730 -8.24392 -6.25193 0.84283 1.15169 1.24233 1.50056 1.52017 1.63237 1.94257 2.10184 2.32621 2.72235 2.98244 3.13332 3.18660 3.52131 3.72151 3.92060 4.05479 4.06747 4.20665 4.28168 4.38949 4.45053 4.52951 4.68999 4.73950 4.82871 4.84080 4.90207 4.91637 5.01025 5.06005 5.12214 5.27833 5.37209 5.50085 5.54185 5.64672 6.08966 6.19788 6.39752 6.46072 6.71478 7.04781 7.11123 7.62762 8.07334 8.78061 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.005208 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.066760 B = 5374.661050 C = 7591.610210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.230 1.230 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.361 4.361 8 H 0.114 0.886 9 N -0.448 5.448 10 C 0.143 3.857 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.508 6.508 15 C 0.551 3.449 16 O -0.626 6.626 17 C -0.289 4.289 18 C 0.123 3.877 19 N -0.459 5.459 20 H 0.456 0.544 21 N -0.304 5.304 22 C 0.107 3.893 23 C 0.151 3.849 24 H 0.091 0.909 25 C -0.136 4.136 26 C -0.142 4.142 27 C 0.041 3.959 28 O -0.403 6.403 29 H 0.271 0.729 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.426 0.574 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.516 -6.361 0.644 12.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.152 1.152 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.488 4.488 8 H 0.131 0.869 9 N -0.166 5.166 10 C 0.019 3.981 11 C -0.155 4.155 12 C 0.338 3.662 13 O -0.442 6.442 14 O -0.321 6.321 15 C 0.342 3.658 16 O -0.514 6.514 17 C -0.303 4.303 18 C -0.028 4.028 19 N -0.167 5.167 20 H 0.304 0.696 21 N -0.128 5.128 22 C -0.062 4.062 23 C 0.092 3.908 24 H 0.109 0.891 25 C -0.174 4.174 26 C -0.179 4.179 27 C -0.035 4.035 28 O -0.322 6.322 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.287 0.713 35 H 0.243 0.757 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.882 -6.483 -0.754 12.689 hybrid contribution -1.199 1.262 1.049 2.033 sum 9.683 -5.221 0.296 11.005 Atomic orbital electron populations 1.69966 1.08251 1.28749 1.45920 1.26584 0.95886 1.03138 0.93866 0.85230 0.80434 0.77398 0.77680 1.15221 1.20823 1.21010 1.19838 0.92674 0.82117 1.54214 0.86925 1.43178 1.32631 1.16858 1.23966 1.20868 0.89666 0.98847 0.88764 1.21668 0.96562 1.02949 0.94346 1.23438 0.88934 0.73317 0.80510 1.90708 1.25777 1.51837 1.75862 1.84505 1.47041 1.66202 1.34382 1.18010 0.83646 0.83887 0.80230 1.90518 1.55837 1.30309 1.74781 1.20188 1.05802 0.96863 1.07450 1.25027 0.87505 1.00269 0.90003 1.46311 1.28898 1.12644 1.28837 0.69602 1.76883 1.21137 0.92651 1.22091 1.22298 0.93402 0.96607 0.93858 1.21469 0.99697 0.87798 0.81881 0.89130 1.23217 0.98616 0.94380 1.01181 1.23142 1.03836 0.97231 0.93696 1.23363 1.00500 0.81611 0.98012 1.88426 1.89092 1.31740 1.22977 0.91889 0.89521 0.95231 0.88061 0.86179 0.71260 0.75674 0.90306 0.89378 0.89591 0.87088 0.90321 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.06 11.47 21.67 0.25 -45.82 16 2 C 0.01 0.46 5.34 84.93 0.45 0.91 16 3 Si 0.97 33.86 29.06 68.60 1.99 35.86 16 4 H -0.23 -6.70 7.11 99.48 0.71 -5.99 16 5 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.36 -15.96 6.31 84.07 0.53 -15.43 16 8 H 0.11 4.40 5.92 -2.92 -0.02 4.38 16 9 N -0.45 -21.45 2.45 -639.30 -1.57 -23.01 16 10 C 0.14 6.81 4.15 86.38 0.36 7.17 16 11 C -0.12 -4.38 6.10 29.85 0.18 -4.20 16 12 C 0.49 17.39 8.33 71.24 0.59 17.98 16 13 O -0.55 -23.46 16.74 21.97 0.37 -23.09 16 14 O -0.51 -12.93 13.42 -51.39 -0.69 -13.62 16 15 C 0.55 26.98 7.59 86.64 0.66 27.64 16 16 O -0.63 -33.13 14.32 -4.12 -0.06 -33.18 16 17 C -0.29 -12.47 6.03 -20.15 -0.12 -12.59 16 18 C 0.12 4.40 10.28 84.29 0.87 5.26 16 19 N -0.46 -13.98 7.29 -56.26 -0.41 -14.39 16 20 H 0.46 9.49 8.96 -213.43 -1.91 7.58 16 21 N -0.30 -11.21 12.63 -46.66 -0.59 -11.80 16 22 C 0.11 4.35 6.21 43.52 0.27 4.62 16 23 C 0.15 5.69 3.77 30.51 0.11 5.81 16 24 H 0.09 3.95 5.86 -2.39 -0.01 3.94 16 25 C -0.14 -3.86 6.56 32.10 0.21 -3.65 16 26 C -0.14 -3.05 7.03 31.91 0.22 -2.82 16 27 C 0.04 1.04 7.79 72.45 0.56 1.61 16 28 O -0.40 -14.83 11.03 -148.98 -1.64 -16.48 16 29 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.09 4.53 6.04 -2.39 -0.01 4.51 16 31 H 0.03 1.57 7.49 -2.39 -0.02 1.55 16 32 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.43 6.61 9.10 -74.06 -0.67 5.93 16 35 H 0.23 7.58 4.22 -2.91 -0.01 7.57 16 36 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.70 8.14 -2.38 -0.02 1.69 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -72.06 346.18 1.09 -70.97 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -1.47 Total: 42.27 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 4.91 Total: 32.29 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -2.32 Total: -95.02 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -2.02 Total: -86.37 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 1.99 Total: 35.86 kcal Total: -72.06 1.09 -70.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.421 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds