Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47210 * 274.06079 * 3 2 1 5 5 H 1.48498 * 109.47511 * 34.06469 * 3 2 1 6 6 H 1.48504 * 109.47037 * 154.06581 * 3 2 1 7 7 C 1.38811 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99908 * 197.52989 * 7 2 1 9 9 N 1.36933 * 120.00070 * 17.52920 * 7 2 1 10 10 C 1.46925 * 120.62950 * 207.99873 * 9 7 2 11 11 C 1.53196 * 108.77375 * 233.62853 * 10 9 7 12 12 C 1.53037 * 109.31258 * 305.36631 * 11 10 9 13 13 C 1.53003 * 109.45974 * 181.38526 * 12 11 10 14 14 N 1.46500 * 109.47255 * 174.97252 * 13 12 11 15 15 C 1.34775 * 119.99933 * 179.97438 * 14 13 12 16 16 O 1.21490 * 120.00234 * 0.02562 * 15 14 13 17 17 C 1.48327 * 119.99990 * 179.97438 * 15 14 13 18 18 C 1.42129 * 126.83822 * 180.02562 * 17 15 14 19 19 C 1.36758 * 103.78449 * 180.02562 * 18 17 15 20 20 C 1.47368 * 126.84302 * 179.97438 * 19 18 17 21 21 O 1.21506 * 119.99756 * 0.02562 * 20 19 18 22 22 O 1.34776 * 120.00399 * 179.72664 * 20 19 18 23 23 O 1.34649 * 106.31836 * 0.24064 * 19 18 17 24 24 N 1.20873 * 111.74047 * 359.56035 * 23 19 18 25 25 C 1.53041 * 109.52796 * 61.37413 * 12 11 10 26 26 C 1.46920 * 120.62993 * 28.01959 * 9 7 2 27 27 H 0.97005 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58584 * 113.84238 * 10 9 7 29 29 H 1.08999 * 109.70457 * 353.48107 * 10 9 7 30 30 H 1.08999 * 109.49657 * 185.41266 * 11 10 9 31 31 H 1.09005 * 109.52359 * 65.33151 * 11 10 9 32 32 H 1.08994 * 109.45865 * 301.35617 * 12 11 10 33 33 H 1.09005 * 109.47273 * 54.97104 * 13 12 11 34 34 H 1.09006 * 109.47317 * 294.97324 * 13 12 11 35 35 H 0.97002 * 120.00030 * 359.97438 * 14 13 12 36 36 H 1.07995 * 128.11088 * 0.02562 * 18 17 15 37 37 H 0.96697 * 117.00583 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.49757 * 58.57773 * 25 12 11 39 39 H 1.08995 * 109.49947 * 178.67668 * 25 12 11 40 40 H 1.08998 * 109.58969 * 246.15420 * 26 9 7 41 41 H 1.09001 * 109.58739 * 6.43901 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4118 2.0960 -1.3966 5 1 1.4933 2.6264 0.7842 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2823 9 7 1.3732 -2.3606 -0.3561 10 6 1.8145 -3.6541 0.1833 11 6 2.0773 -4.6111 -0.9837 12 6 0.8283 -4.6905 -1.8644 13 6 1.0752 -5.6720 -3.0119 14 7 -0.1578 -5.8396 -3.7850 15 6 -0.1777 -6.6633 -4.8516 16 8 0.8267 -7.2671 -5.1717 17 6 -1.4263 -6.8334 -5.6341 18 6 -1.6103 -7.6589 -6.7763 19 6 -2.9205 -7.4602 -7.1144 20 6 -3.6469 -8.0787 -8.2375 21 8 -3.0755 -8.8561 -8.9761 22 8 -4.9467 -7.7868 -8.4418 23 8 -3.4129 -6.5822 -6.2201 24 7 -2.5785 -6.2524 -5.4102 25 6 0.5168 -3.3056 -2.4363 26 6 0.2358 -2.3339 -1.2858 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0665 0.8259 29 1 2.7304 -3.5192 0.7586 30 1 2.3124 -5.6022 -0.5956 31 1 2.9163 -4.2433 -1.5746 32 1 -0.0158 -5.0350 -1.2672 33 1 1.3833 -6.6356 -2.6059 34 1 1.8605 -5.2830 -3.6602 35 1 -0.9599 -5.3578 -3.5293 36 1 -0.8854 -8.2943 -7.2633 37 1 -5.3809 -8.2173 -9.1910 38 1 1.3704 -2.9497 -3.0132 39 1 -0.3591 -3.3672 -3.0822 40 1 -0.6707 -2.6387 -0.7630 41 1 0.1091 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -42.068924 kcal Electronic energy + Delta-G solvation = -26441.362933 eV Core-core repulsion = 22325.477999 eV Total energy + Delta-G solvation = -4115.884934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.74131 -40.71302 -39.93377 -37.90891 -36.90183 -35.16540 -34.61425 -33.16844 -32.63395 -30.70255 -29.89730 -27.35188 -25.87835 -25.13618 -23.77159 -22.89467 -22.26177 -21.15649 -20.71782 -19.54810 -19.02332 -18.54539 -18.41479 -17.33902 -16.77244 -16.31774 -16.18146 -15.91918 -15.41378 -14.86233 -14.49211 -14.26972 -14.09724 -14.06402 -13.62180 -13.54648 -13.14932 -12.53587 -12.48977 -12.35858 -12.33914 -11.96263 -11.62545 -11.44089 -11.08562 -11.02589 -10.75554 -10.65923 -10.53554 -10.53030 -10.28328 -10.21854 -9.94006 -9.62743 -9.49564 -9.22281 -8.49015 -6.69983 -5.81200 -3.23380 -0.05006 0.79603 1.64853 1.98944 2.42476 2.78886 2.82148 3.36436 3.40088 3.43820 3.44925 4.09551 4.28493 4.47757 4.48435 4.74376 4.99821 5.14586 5.16179 5.29312 5.38558 5.53207 5.63312 5.75479 5.82043 5.94881 6.08323 6.15867 6.27881 6.43904 6.52402 6.61917 6.70740 6.77218 6.94506 6.96550 7.13829 7.32348 7.36232 7.61661 7.78035 7.80537 8.43023 9.19290 9.82806 10.39354 11.27373 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002264 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.829680 B =12365.121020 C =13187.521351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.092 4.092 13 C 0.122 3.878 14 N -0.703 5.703 15 C 0.595 3.405 16 O -0.521 6.521 17 C -0.031 4.031 18 C -0.081 4.081 19 C -0.079 4.079 20 C 0.582 3.418 21 O -0.481 6.481 22 O -0.496 6.496 23 O 0.165 5.835 24 N -0.297 5.297 25 C -0.136 4.136 26 C 0.171 3.829 27 H 0.254 0.746 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.409 0.591 36 H 0.199 0.801 37 H 0.426 0.574 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -16.609 -14.741 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.111 4.111 13 C 0.000 4.000 14 N -0.354 5.354 15 C 0.378 3.622 16 O -0.395 6.395 17 C -0.188 4.188 18 C -0.102 4.102 19 C -0.143 4.143 20 C 0.422 3.578 21 O -0.367 6.367 22 O -0.308 6.308 23 O 0.076 5.924 24 N 0.010 4.990 25 C -0.176 4.176 26 C 0.045 3.955 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.245 0.755 36 H 0.216 0.784 37 H 0.287 0.713 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.744 -16.038 -13.818 22.542 hybrid contribution 0.032 0.358 -0.863 0.935 sum -7.712 -15.680 -14.681 22.823 Atomic orbital electron populations 1.70036 1.05265 1.25490 1.53931 1.25043 0.95288 0.98448 1.00929 0.86280 0.79190 0.83730 0.77608 1.21489 1.21783 1.20375 1.19207 0.92778 0.84901 1.41294 0.91651 1.44055 1.36462 1.01466 1.49536 1.20880 0.97695 0.86856 0.92628 1.21989 0.96460 0.99360 0.98584 1.21336 0.99656 0.95206 0.94860 1.21739 0.85159 0.99976 0.93165 1.45973 1.15957 1.44799 1.28676 1.16718 0.84765 0.80393 0.80342 1.90831 1.32810 1.47257 1.68628 1.23653 0.94885 1.00755 0.99524 1.22923 0.94486 0.98489 0.94345 1.22654 0.93966 1.00788 0.96866 1.18574 0.80349 0.77915 0.80933 1.91040 1.68809 1.32579 1.44316 1.84609 1.23809 1.68471 1.53959 1.85083 1.33909 1.44566 1.28808 1.74175 0.99357 1.16263 1.09174 1.22271 1.00113 0.95227 0.99945 1.20761 0.88733 0.98267 0.87762 0.93650 0.96493 0.92651 0.92833 0.91949 0.91111 0.91236 0.90928 0.75477 0.78388 0.71316 0.92382 0.93618 0.96455 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.22 55.49 0.62 -25.33 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.47 2.99 -172.32 -0.52 -14.99 16 10 C 0.15 2.94 6.51 -3.71 -0.02 2.92 16 11 C -0.12 -2.00 5.36 -26.61 -0.14 -2.15 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.12 1.63 5.06 -4.04 -0.02 1.61 16 14 N -0.70 -8.90 5.27 -61.09 -0.32 -9.22 16 15 C 0.60 7.85 7.85 -12.11 -0.10 7.76 16 16 O -0.52 -8.15 16.95 5.37 0.09 -8.06 16 17 C -0.03 -0.34 7.18 -82.59 -0.59 -0.93 16 18 C -0.08 -0.74 10.77 -38.63 -0.42 -1.15 16 19 C -0.08 -0.66 7.36 -36.40 -0.27 -0.92 16 20 C 0.58 4.06 8.33 34.45 0.29 4.34 16 21 O -0.48 -4.43 17.70 -19.27 -0.34 -4.77 16 22 O -0.50 -2.09 13.44 -41.49 -0.56 -2.65 16 23 O 0.16 1.53 11.21 15.53 0.17 1.70 16 24 N -0.30 -3.21 11.80 33.37 0.39 -2.82 16 25 C -0.14 -2.42 5.25 -26.61 -0.14 -2.56 16 26 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.41 4.86 7.41 -40.82 -0.30 4.56 16 36 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.43 -0.36 9.11 45.56 0.42 0.06 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.73 7.15 -51.93 -0.37 0.35 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -32.93 354.21 -6.35 -39.27 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.34 Total: 0.78 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.86 Total: 4.20 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.18 Total: -52.36 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.63 Total: -13.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.93 -6.35 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.796 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds