Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47210 * 274.06079 * 3 2 1 5 5 H 1.48498 * 109.47511 * 34.06469 * 3 2 1 6 6 H 1.48504 * 109.47037 * 154.06581 * 3 2 1 7 7 C 1.38811 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99908 * 197.52989 * 7 2 1 9 9 N 1.36933 * 120.00070 * 17.52920 * 7 2 1 10 10 C 1.46925 * 120.62950 * 207.99873 * 9 7 2 11 11 C 1.53196 * 108.77375 * 233.62853 * 10 9 7 12 12 C 1.53037 * 109.31258 * 305.36631 * 11 10 9 13 13 C 1.53003 * 109.45974 * 181.38526 * 12 11 10 14 14 N 1.46500 * 109.47255 * 174.97252 * 13 12 11 15 15 C 1.34775 * 119.99933 * 179.97438 * 14 13 12 16 16 O 1.21490 * 120.00234 * 0.02562 * 15 14 13 17 17 C 1.48327 * 119.99990 * 179.97438 * 15 14 13 18 18 C 1.42129 * 126.83822 * 180.02562 * 17 15 14 19 19 C 1.36758 * 103.78449 * 180.02562 * 18 17 15 20 20 C 1.47368 * 126.84302 * 179.97438 * 19 18 17 21 21 O 1.21506 * 119.99756 * 0.02562 * 20 19 18 22 22 O 1.34776 * 120.00399 * 179.72664 * 20 19 18 23 23 O 1.34649 * 106.31836 * 0.24064 * 19 18 17 24 24 N 1.20873 * 111.74047 * 359.56035 * 23 19 18 25 25 C 1.53041 * 109.52796 * 61.37413 * 12 11 10 26 26 C 1.46920 * 120.62993 * 28.01959 * 9 7 2 27 27 H 0.97005 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58584 * 113.84238 * 10 9 7 29 29 H 1.08999 * 109.70457 * 353.48107 * 10 9 7 30 30 H 1.08999 * 109.49657 * 185.41266 * 11 10 9 31 31 H 1.09005 * 109.52359 * 65.33151 * 11 10 9 32 32 H 1.08994 * 109.45865 * 301.35617 * 12 11 10 33 33 H 1.09005 * 109.47273 * 54.97104 * 13 12 11 34 34 H 1.09006 * 109.47317 * 294.97324 * 13 12 11 35 35 H 0.97002 * 120.00030 * 359.97438 * 14 13 12 36 36 H 1.07995 * 128.11088 * 0.02562 * 18 17 15 37 37 H 0.96697 * 117.00583 * 180.02562 * 22 20 19 38 38 H 1.08999 * 109.49757 * 58.57773 * 25 12 11 39 39 H 1.08995 * 109.49947 * 178.67668 * 25 12 11 40 40 H 1.08998 * 109.58969 * 246.15420 * 26 9 7 41 41 H 1.09001 * 109.58739 * 6.43901 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4118 2.0960 -1.3966 5 1 1.4933 2.6264 0.7842 6 1 3.5881 1.4169 0.6123 7 6 2.0102 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2823 9 7 1.3732 -2.3606 -0.3561 10 6 1.8145 -3.6541 0.1833 11 6 2.0773 -4.6111 -0.9837 12 6 0.8283 -4.6905 -1.8644 13 6 1.0752 -5.6720 -3.0119 14 7 -0.1578 -5.8396 -3.7850 15 6 -0.1777 -6.6633 -4.8516 16 8 0.8267 -7.2671 -5.1717 17 6 -1.4263 -6.8334 -5.6341 18 6 -1.6103 -7.6589 -6.7763 19 6 -2.9205 -7.4602 -7.1144 20 6 -3.6469 -8.0787 -8.2375 21 8 -3.0755 -8.8561 -8.9761 22 8 -4.9467 -7.7868 -8.4418 23 8 -3.4129 -6.5822 -6.2201 24 7 -2.5785 -6.2524 -5.4102 25 6 0.5168 -3.3056 -2.4363 26 6 0.2358 -2.3339 -1.2858 27 1 -0.4850 0.8401 -0.0004 28 1 1.0366 -4.0665 0.8259 29 1 2.7304 -3.5192 0.7586 30 1 2.3124 -5.6022 -0.5956 31 1 2.9163 -4.2433 -1.5746 32 1 -0.0158 -5.0350 -1.2672 33 1 1.3833 -6.6356 -2.6059 34 1 1.8605 -5.2830 -3.6602 35 1 -0.9599 -5.3578 -3.5293 36 1 -0.8854 -8.2943 -7.2633 37 1 -5.3809 -8.2173 -9.1910 38 1 1.3704 -2.9497 -3.0132 39 1 -0.3591 -3.3672 -3.0822 40 1 -0.6707 -2.6387 -0.7630 41 1 0.1091 -1.3253 -1.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -65.707770 kcal Electronic energy + Delta-G solvation = -26442.387990 eV Core-core repulsion = 22325.477999 eV Total energy + Delta-G solvation = -4116.909991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.51740 -41.24062 -41.00635 -39.39103 -37.37504 -36.55109 -35.43396 -34.62014 -33.55867 -32.39145 -31.53296 -28.77562 -26.68294 -26.33887 -25.12260 -23.92264 -23.63945 -22.59579 -21.60037 -20.77104 -20.08261 -19.31449 -18.93470 -18.72105 -18.16158 -17.25350 -16.88783 -16.75319 -16.73828 -16.47926 -15.73623 -15.35829 -15.28479 -15.07339 -14.99563 -14.74251 -14.71413 -14.04263 -13.88066 -13.47335 -13.23810 -13.09005 -12.85392 -12.79144 -12.58929 -12.30581 -12.23352 -11.97795 -11.89445 -11.86108 -11.71045 -11.62288 -11.24687 -11.18079 -11.13791 -10.54684 -10.29895 -8.68060 -7.88117 -5.32695 -0.71585 -0.03582 1.05692 1.41088 1.45472 1.47164 1.55954 1.58370 1.83165 2.12614 2.50593 2.55781 3.25978 3.33810 3.56967 3.69314 3.73202 3.81625 3.91695 4.03431 4.15760 4.48132 4.50584 4.52512 4.64509 4.71471 4.72891 4.91013 5.02264 5.09322 5.17444 5.26805 5.27500 5.28637 5.40913 5.54045 5.65608 5.77360 6.12603 6.39382 6.48729 6.76494 6.80898 7.15271 7.87531 8.38092 9.18022 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002264 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.829680 B =12365.121020 C =13187.521351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.081 4.081 13 C 0.133 3.867 14 N -0.700 5.700 15 C 0.598 3.402 16 O -0.548 6.548 17 C -0.045 4.045 18 C -0.082 4.082 19 C -0.070 4.070 20 C 0.595 3.405 21 O -0.504 6.504 22 O -0.488 6.488 23 O 0.175 5.825 24 N -0.308 5.308 25 C -0.122 4.122 26 C 0.176 3.824 27 H 0.249 0.751 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.210 0.790 37 H 0.449 0.551 38 H 0.049 0.951 39 H 0.064 0.936 40 H -0.002 1.002 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -18.029 -15.833 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.014 3.986 11 C -0.153 4.153 12 C -0.100 4.100 13 C 0.010 3.990 14 N -0.352 5.352 15 C 0.382 3.618 16 O -0.425 6.425 17 C -0.201 4.201 18 C -0.104 4.104 19 C -0.134 4.134 20 C 0.436 3.564 21 O -0.392 6.392 22 O -0.303 6.303 23 O 0.084 5.916 24 N 0.001 4.999 25 C -0.161 4.161 26 C 0.050 3.950 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.227 0.773 37 H 0.314 0.686 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.016 0.984 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.857 -17.477 -14.908 24.278 hybrid contribution -0.036 0.770 -0.518 0.928 sum -7.893 -16.708 -15.426 24.071 Atomic orbital electron populations 1.70182 1.06598 1.25761 1.55530 1.25774 0.96045 1.01450 1.01474 0.85296 0.78291 0.79808 0.77336 1.21420 1.22187 1.19264 1.19522 0.93001 0.86225 1.40356 0.91680 1.44345 1.36568 1.02341 1.50338 1.21064 0.97352 0.85865 0.94290 1.21853 0.96602 0.99856 0.97007 1.21188 0.99483 0.93882 0.95411 1.21536 0.85292 0.99826 0.92297 1.45927 1.15879 1.44751 1.28599 1.16860 0.85039 0.79755 0.80143 1.90813 1.33952 1.48323 1.69367 1.23442 0.94383 1.01997 1.00304 1.23062 0.95150 0.98360 0.93800 1.22849 0.93821 0.99995 0.96714 1.18288 0.80919 0.77177 0.80048 1.91045 1.69534 1.33661 1.45008 1.84572 1.22277 1.68326 1.55123 1.85063 1.33467 1.44449 1.28644 1.74168 0.99425 1.16559 1.09730 1.22047 1.00570 0.95495 0.97975 1.20577 0.87895 0.97589 0.88920 0.94164 0.96636 0.92775 0.89370 0.92321 0.90561 0.89875 0.91397 0.74984 0.77294 0.68622 0.93262 0.91715 0.98379 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 11.22 21.65 0.24 -55.04 16 2 C -0.05 -2.92 4.90 84.86 0.42 -2.50 16 3 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 8 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -30.23 2.99 -699.10 -2.09 -32.32 16 10 C 0.14 5.52 6.51 86.36 0.56 6.08 16 11 C -0.11 -3.43 5.36 30.67 0.16 -3.26 16 12 C -0.08 -2.30 2.19 -10.77 -0.02 -2.32 16 13 C 0.13 3.26 5.06 86.38 0.44 3.70 16 14 N -0.70 -16.53 5.27 -465.49 -2.45 -18.98 16 15 C 0.60 14.98 7.85 86.93 0.68 15.67 16 16 O -0.55 -16.49 16.95 -3.68 -0.06 -16.55 16 17 C -0.04 -0.94 7.18 42.93 0.31 -0.63 16 18 C -0.08 -1.38 10.77 22.89 0.25 -1.13 16 19 C -0.07 -1.03 7.36 24.33 0.18 -0.86 16 20 C 0.59 7.05 8.33 70.23 0.59 7.64 16 21 O -0.50 -8.41 17.70 19.81 0.35 -8.05 16 22 O -0.49 -2.80 13.44 -56.11 -0.75 -3.56 16 23 O 0.17 2.95 11.21 65.77 0.74 3.68 16 24 N -0.31 -6.24 11.80 -48.97 -0.58 -6.82 16 25 C -0.12 -4.26 5.25 30.67 0.16 -4.10 16 26 C 0.18 8.26 5.31 86.37 0.46 8.72 16 27 H 0.25 14.30 8.31 -92.70 -0.77 13.52 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 2.11 7.94 -2.39 -0.02 2.09 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.41 9.14 7.41 -92.71 -0.69 8.45 16 36 H 0.21 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.45 -2.05 9.11 -74.06 -0.67 -2.72 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.00 7.15 -2.39 -0.02 1.98 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.05 2.69 6.06 -2.39 -0.01 2.68 16 Total: -1.00 -71.82 354.21 2.14 -69.68 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.26 Total: 7.43 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 4.98 Total: 13.50 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.88 Total: -113.16 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.27 Total: -24.48 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.82 2.14 -69.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.972 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds