Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38049 * 126.29228 * 2 1 4 4 C 1.47436 * 126.41349 * 0.02562 * 3 2 1 5 5 O 1.21598 * 119.99676 * 311.97607 * 4 3 2 6 6 N 1.34772 * 119.99877 * 131.97974 * 4 3 2 7 7 C 1.47149 * 120.98219 * 4.32421 * 6 4 3 8 8 C 1.53298 * 108.38647 * 230.51651 * 7 6 4 9 9 O 1.42961 * 109.21953 * 307.69775 * 8 7 6 10 10 C 1.42962 * 114.16594 * 62.58436 * 9 8 7 11 11 H 1.09000 * 109.51206 * 57.33843 * 10 9 8 12 12 C 1.50697 * 109.51361 * 177.43941 * 10 9 8 13 13 O 1.20827 * 120.00069 * 4.99932 * 12 10 9 14 14 O 1.34232 * 120.00203 * 184.99913 * 12 10 9 15 15 C 1.47156 * 120.98132 * 184.04927 * 6 4 3 16 16 C 1.41285 * 107.17370 * 180.12776 * 3 2 1 17 17 N 1.30456 * 108.02134 * 359.63279 * 16 3 2 18 18 N 1.34261 * 126.29337 * 179.72114 * 2 1 3 19 19 C 1.46494 * 125.75286 * 0.02562 * 18 2 1 20 20 C 1.50700 * 109.47389 * 270.02713 * 19 18 2 21 21 H 1.08007 * 119.99700 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00548 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99494 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00361 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46992 * 59.99716 * 24 22 20 26 26 H 1.48502 * 109.47321 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46981 * 299.99966 * 24 22 20 28 28 H 1.08993 * 109.47403 * 270.25831 * 1 2 3 29 29 H 1.09006 * 109.46877 * 30.25562 * 1 2 3 30 30 H 1.09006 * 109.47110 * 150.25011 * 1 2 3 31 31 H 1.08995 * 109.68546 * 350.23842 * 7 6 4 32 32 H 1.09004 * 109.68143 * 110.76083 * 7 6 4 33 33 H 1.09001 * 109.51139 * 67.62315 * 8 7 6 34 34 H 1.09006 * 109.51343 * 187.72488 * 8 7 6 35 35 H 0.96701 * 117.00005 * 179.97438 * 14 12 10 36 36 H 1.08997 * 109.67749 * 249.20466 * 15 6 4 37 37 H 1.09002 * 109.67590 * 9.76133 * 15 6 4 38 38 H 1.08002 * 125.99515 * 179.89239 * 16 3 2 39 39 H 1.09003 * 109.47326 * 30.02227 * 19 18 2 40 40 H 1.08997 * 109.47463 * 150.02661 * 19 18 2 41 41 H 0.97001 * 119.99619 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 1.0323 2.8917 -0.7820 6 7 2.4312 3.3956 0.8682 7 6 3.5309 2.9933 1.7593 8 6 3.1683 3.4044 3.1909 9 8 2.8121 4.7889 3.2071 10 6 1.6594 5.1058 2.4231 11 1 0.8108 4.5150 2.7681 12 6 1.3423 6.5723 2.5643 13 8 2.0828 7.2930 3.1906 14 8 0.2372 7.0779 1.9943 15 6 1.9485 4.7835 0.9483 16 6 3.6590 0.6499 -0.0030 17 7 3.6340 -0.6544 0.0033 18 7 2.3017 -1.0821 0.0053 19 6 1.8501 -2.4757 0.0115 20 6 1.6941 -2.9469 1.4344 21 1 1.9102 -2.2754 2.2524 22 6 1.2766 -4.2353 1.6922 23 7 1.0140 -5.0531 0.6962 24 14 1.0839 -4.8196 3.4560 25 1 0.0824 -3.9719 4.1516 26 1 0.6272 -6.2326 3.4624 27 1 2.3895 -4.7187 4.1562 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5100 31 1 3.6662 1.9129 1.7108 32 1 4.4510 3.4926 1.4554 33 1 2.3252 2.8075 3.5386 34 1 4.0248 3.2404 3.8449 35 1 0.0758 8.0240 2.1127 36 1 2.7119 5.4602 0.5645 37 1 1.0354 4.8888 0.3624 38 1 4.5449 1.2677 -0.0054 39 1 0.8918 -2.5495 -0.5027 40 1 2.5851 -3.0982 -0.4988 41 1 0.7198 -5.9595 0.8776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607506931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -85.900317 kcal Electronic energy + Delta-G solvation = -27638.621791 eV Core-core repulsion = 23520.836185 eV Total energy + Delta-G solvation = -4117.785605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19777 -40.73043 -39.59123 -38.12360 -36.44107 -34.87630 -33.94018 -32.41455 -32.13025 -31.15918 -28.57882 -27.56907 -26.76038 -25.29501 -23.54923 -23.41345 -21.92439 -20.97647 -19.89157 -18.74764 -18.41536 -17.53188 -16.98552 -16.78734 -16.54666 -16.44010 -15.98497 -15.52841 -15.09799 -14.81227 -14.57497 -14.52099 -14.33335 -13.92212 -13.46949 -13.25401 -12.97770 -12.63428 -12.54924 -12.35288 -12.13954 -11.92915 -11.86586 -11.82790 -11.57759 -11.23733 -11.19819 -10.93965 -10.75361 -10.52118 -10.44064 -10.32862 -10.00440 -9.60513 -8.76549 -8.76111 -8.66513 -7.97375 -6.38991 -4.47582 1.75184 2.15444 2.18321 2.68573 2.72819 3.14610 3.19859 3.20176 3.31332 3.41685 3.73199 4.18492 4.22360 4.50601 4.64762 4.73076 4.83113 4.93136 4.96344 5.06896 5.17630 5.24071 5.35888 5.43984 5.53350 5.59486 5.63237 5.85740 5.94382 6.07992 6.21945 6.28886 6.40669 6.58531 6.71557 6.85339 7.07205 7.32626 7.48840 7.51606 7.70645 7.71599 8.26301 8.32972 8.57069 9.19532 10.69156 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.003126 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.178719 B = 8955.382752 C = 9427.647661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.155 3.845 3 C -0.329 4.329 4 C 0.614 3.386 5 O -0.542 6.542 6 N -0.617 5.617 7 C 0.066 3.934 8 C 0.049 3.951 9 O -0.358 6.358 10 C 0.088 3.912 11 H 0.105 0.895 12 C 0.491 3.509 13 O -0.491 6.491 14 O -0.508 6.508 15 C 0.097 3.903 16 C 0.054 3.946 17 N -0.292 5.292 18 N -0.311 5.311 19 C 0.251 3.749 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.178 0.822 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 18.461 2.539 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 C -0.345 4.345 4 C 0.405 3.595 5 O -0.419 6.419 6 N -0.352 5.352 7 C -0.057 4.057 8 C -0.028 4.028 9 O -0.276 6.276 10 C 0.028 3.972 11 H 0.122 0.878 12 C 0.330 3.670 13 O -0.377 6.377 14 O -0.321 6.321 15 C -0.027 4.027 16 C -0.132 4.132 17 N -0.112 5.112 18 N -0.088 5.088 19 C 0.134 3.866 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.276 0.724 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.195 0.805 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.677 17.093 2.277 17.257 hybrid contribution -0.587 0.689 0.987 1.339 sum 0.090 17.782 3.264 18.080 Atomic orbital electron populations 1.20543 0.87129 1.04178 1.03624 1.21304 0.94686 0.86436 0.95760 1.19503 0.93601 0.91965 1.29440 1.17470 0.79632 0.83999 0.78403 1.90722 1.33207 1.79113 1.38854 1.47950 1.37202 1.10340 1.39691 1.22680 0.89769 1.03756 0.89506 1.23173 1.01893 0.80923 0.96762 1.88009 1.44600 1.26393 1.68638 1.21776 0.91782 0.89876 0.93797 0.87785 1.22620 0.78279 0.90388 0.75680 1.90757 1.48600 1.60614 1.37734 1.84497 1.43292 1.32845 1.71504 1.22068 1.02987 0.83761 0.93839 1.23721 0.96034 0.92464 1.01022 1.77170 0.98583 1.12057 1.23403 1.49336 1.02380 1.08250 1.48802 1.19858 0.96440 0.70851 0.99428 1.21185 1.47757 0.98180 0.90889 0.91717 1.24924 0.94423 0.95968 0.98306 1.69903 1.44227 1.07126 1.31327 0.86382 0.78862 0.77823 0.83456 1.19888 1.20849 1.19867 0.90015 0.89425 0.90195 0.86751 0.90264 0.91718 0.86515 0.72373 0.90293 0.86664 0.80549 0.92582 0.92471 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.92 36.00 0.36 -1.23 16 2 C 0.15 2.93 7.01 -81.60 -0.57 2.36 16 3 C -0.33 -5.62 5.17 -105.06 -0.54 -6.16 16 4 C 0.61 9.63 7.36 -12.52 -0.09 9.54 16 5 O -0.54 -9.79 15.54 5.28 0.08 -9.71 16 6 N -0.62 -7.60 3.01 -173.28 -0.52 -8.12 16 7 C 0.07 0.67 5.98 -3.53 -0.02 0.65 16 8 C 0.05 0.47 6.99 37.31 0.26 0.73 16 9 O -0.36 -4.07 9.92 -55.11 -0.55 -4.62 16 10 C 0.09 0.90 3.31 -27.51 -0.09 0.81 16 11 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 12 C 0.49 4.95 7.66 36.00 0.28 5.23 16 13 O -0.49 -6.55 17.27 -25.46 -0.44 -6.99 16 14 O -0.51 -3.58 13.42 -39.26 -0.53 -4.11 16 15 C 0.10 1.04 5.92 -3.31 -0.02 1.02 16 16 C 0.05 0.88 9.65 -16.98 -0.16 0.72 16 17 N -0.29 -5.94 12.50 30.86 0.39 -5.55 16 18 N -0.31 -6.64 3.56 -57.78 -0.21 -6.85 16 19 C 0.25 6.00 5.97 -5.20 -0.03 5.97 16 20 C -0.54 -13.93 9.39 -34.44 -0.32 -14.26 16 21 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 24 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 30 H 0.08 1.32 7.05 -51.93 -0.37 0.95 16 31 H 0.11 1.27 4.69 -51.93 -0.24 1.03 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.42 1.05 9.10 45.56 0.41 1.47 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.28 7.11 -51.93 -0.37 0.92 16 38 H 0.18 2.18 7.54 -52.49 -0.40 1.79 16 39 H 0.06 1.34 7.02 -51.93 -0.36 0.97 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -33.06 351.81 -6.01 -39.07 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.19 Total: 2.74 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.06 Total: 7.02 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.39 Total: -43.71 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.43 Total: -25.42 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.06 -6.01 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607506931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds