Wall clock time and date at job start Tue Mar 31 2020 14:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38049 * 126.29228 * 2 1 4 4 C 1.47436 * 126.41349 * 0.02562 * 3 2 1 5 5 O 1.21598 * 119.99676 * 311.97607 * 4 3 2 6 6 N 1.34772 * 119.99877 * 131.97974 * 4 3 2 7 7 C 1.47149 * 120.98219 * 4.32421 * 6 4 3 8 8 C 1.53298 * 108.38647 * 230.51651 * 7 6 4 9 9 O 1.42961 * 109.21953 * 307.69775 * 8 7 6 10 10 C 1.42962 * 114.16594 * 62.58436 * 9 8 7 11 11 H 1.09000 * 109.51206 * 57.33843 * 10 9 8 12 12 C 1.50697 * 109.51361 * 177.43941 * 10 9 8 13 13 O 1.20827 * 120.00069 * 4.99932 * 12 10 9 14 14 O 1.34232 * 120.00203 * 184.99913 * 12 10 9 15 15 C 1.47156 * 120.98132 * 184.04927 * 6 4 3 16 16 C 1.41285 * 107.17370 * 180.12776 * 3 2 1 17 17 N 1.30456 * 108.02134 * 359.63279 * 16 3 2 18 18 N 1.34261 * 126.29337 * 179.72114 * 2 1 3 19 19 C 1.46494 * 125.75286 * 0.02562 * 18 2 1 20 20 C 1.50700 * 109.47389 * 270.02713 * 19 18 2 21 21 H 1.08007 * 119.99700 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00548 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99494 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00361 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46992 * 59.99716 * 24 22 20 26 26 H 1.48502 * 109.47321 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46981 * 299.99966 * 24 22 20 28 28 H 1.08993 * 109.47403 * 270.25831 * 1 2 3 29 29 H 1.09006 * 109.46877 * 30.25562 * 1 2 3 30 30 H 1.09006 * 109.47110 * 150.25011 * 1 2 3 31 31 H 1.08995 * 109.68546 * 350.23842 * 7 6 4 32 32 H 1.09004 * 109.68143 * 110.76083 * 7 6 4 33 33 H 1.09001 * 109.51139 * 67.62315 * 8 7 6 34 34 H 1.09006 * 109.51343 * 187.72488 * 8 7 6 35 35 H 0.96701 * 117.00005 * 179.97438 * 14 12 10 36 36 H 1.08997 * 109.67749 * 249.20466 * 15 6 4 37 37 H 1.09002 * 109.67590 * 9.76133 * 15 6 4 38 38 H 1.08002 * 125.99515 * 179.89239 * 16 3 2 39 39 H 1.09003 * 109.47326 * 30.02227 * 19 18 2 40 40 H 1.08997 * 109.47463 * 150.02661 * 19 18 2 41 41 H 0.97001 * 119.99619 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 1.0323 2.8917 -0.7820 6 7 2.4312 3.3956 0.8682 7 6 3.5309 2.9933 1.7593 8 6 3.1683 3.4044 3.1909 9 8 2.8121 4.7889 3.2071 10 6 1.6594 5.1058 2.4231 11 1 0.8108 4.5150 2.7681 12 6 1.3423 6.5723 2.5643 13 8 2.0828 7.2930 3.1906 14 8 0.2372 7.0779 1.9943 15 6 1.9485 4.7835 0.9483 16 6 3.6590 0.6499 -0.0030 17 7 3.6340 -0.6544 0.0033 18 7 2.3017 -1.0821 0.0053 19 6 1.8501 -2.4757 0.0115 20 6 1.6941 -2.9469 1.4344 21 1 1.9102 -2.2754 2.2524 22 6 1.2766 -4.2353 1.6922 23 7 1.0140 -5.0531 0.6962 24 14 1.0839 -4.8196 3.4560 25 1 0.0824 -3.9719 4.1516 26 1 0.6272 -6.2326 3.4624 27 1 2.3895 -4.7187 4.1562 28 1 -0.3634 0.0046 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5100 31 1 3.6662 1.9129 1.7108 32 1 4.4510 3.4926 1.4554 33 1 2.3252 2.8075 3.5386 34 1 4.0248 3.2404 3.8449 35 1 0.0758 8.0240 2.1127 36 1 2.7119 5.4602 0.5645 37 1 1.0354 4.8888 0.3624 38 1 4.5449 1.2677 -0.0054 39 1 0.8918 -2.5495 -0.5027 40 1 2.5851 -3.0982 -0.4988 41 1 0.7198 -5.9595 0.8776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607506931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:01 Heat of formation + Delta-G solvation = -109.475163 kcal Electronic energy + Delta-G solvation = -27639.644073 eV Core-core repulsion = 23520.836185 eV Total energy + Delta-G solvation = -4118.807887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46464 -41.69140 -40.59479 -39.16609 -37.18379 -35.99560 -35.66861 -33.87348 -33.24541 -32.56465 -29.70265 -29.01555 -28.18185 -26.34238 -25.18974 -24.43485 -22.94745 -21.99500 -21.24761 -19.93239 -19.26142 -18.86794 -18.52156 -17.87316 -17.45132 -17.30815 -17.22481 -16.68492 -16.43851 -16.06238 -15.82588 -15.69396 -15.37509 -15.05869 -14.78512 -14.38101 -14.33440 -13.91805 -13.80546 -13.61783 -13.55326 -13.18897 -13.08701 -12.94164 -12.74733 -12.67322 -12.61438 -12.27537 -12.03689 -11.85204 -11.81475 -11.58481 -11.37292 -10.89748 -10.73687 -10.23295 -9.77034 -9.40814 -8.35412 -6.51941 0.76952 0.95939 1.32910 1.40655 1.41761 1.46820 1.49962 1.60859 1.85306 2.15866 2.34680 2.96990 2.97633 3.38952 3.58189 3.72231 3.76425 3.91781 3.98890 4.12128 4.16453 4.19748 4.33116 4.44384 4.49665 4.59810 4.60864 4.73388 4.79378 4.86309 4.92039 5.00168 5.16240 5.29703 5.48276 5.51514 5.66094 5.76898 5.83776 6.05885 6.21923 6.57208 6.84033 6.90362 7.10100 7.19367 8.72304 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017671 B = 0.003126 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.178719 B = 8955.382752 C = 9427.647661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.139 3.861 3 C -0.325 4.325 4 C 0.617 3.383 5 O -0.570 6.570 6 N -0.608 5.608 7 C 0.064 3.936 8 C 0.050 3.950 9 O -0.372 6.372 10 C 0.088 3.912 11 H 0.113 0.887 12 C 0.501 3.499 13 O -0.527 6.527 14 O -0.500 6.500 15 C 0.100 3.900 16 C 0.076 3.924 17 N -0.331 5.331 18 N -0.335 5.335 19 C 0.268 3.732 20 C -0.553 4.553 21 H 0.058 0.942 22 C 0.023 3.977 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.272 1.272 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.140 0.860 35 H 0.437 0.563 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.220 0.780 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 20.116 3.796 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 C -0.340 4.340 4 C 0.407 3.593 5 O -0.449 6.449 6 N -0.342 5.342 7 C -0.058 4.058 8 C -0.026 4.026 9 O -0.290 6.290 10 C 0.028 3.972 11 H 0.130 0.870 12 C 0.342 3.658 13 O -0.416 6.416 14 O -0.315 6.315 15 C -0.023 4.023 16 C -0.110 4.110 17 N -0.152 5.152 18 N -0.113 5.113 19 C 0.149 3.851 20 C -0.591 4.591 21 H 0.076 0.924 22 C -0.178 4.178 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.197 1.197 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.300 0.700 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.236 0.764 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.928 18.796 3.544 19.150 hybrid contribution -0.652 0.323 0.558 0.917 sum 0.276 19.119 4.101 19.556 Atomic orbital electron populations 1.20558 0.85937 1.04246 1.04202 1.21801 0.95744 0.86424 0.95614 1.19715 0.93609 0.92461 1.28214 1.17227 0.79556 0.83708 0.78816 1.90713 1.34488 1.79427 1.40291 1.47917 1.37014 1.10528 1.38722 1.22849 0.89861 1.03463 0.89641 1.23288 1.02724 0.80095 0.96532 1.88011 1.44948 1.27288 1.68800 1.21810 0.91898 0.90305 0.93228 0.86957 1.22527 0.78260 0.90070 0.74897 1.90751 1.49963 1.61379 1.39516 1.84461 1.41737 1.34773 1.70494 1.22141 1.03189 0.82729 0.94283 1.24372 0.97221 0.91445 0.97957 1.77127 0.98368 1.14091 1.25567 1.49044 1.03260 1.07683 1.51287 1.19356 0.95166 0.72338 0.98250 1.21376 1.47755 0.98446 0.91506 0.92412 1.25740 0.93912 0.95987 1.02202 1.70001 1.44915 1.07494 1.33304 0.85405 0.78898 0.77553 0.78679 1.18885 1.20270 1.19713 0.89123 0.88527 0.90809 0.87593 0.87961 0.92043 0.84247 0.69952 0.89138 0.87055 0.76393 0.93298 0.95324 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.92 71.23 0.71 -2.30 16 2 C 0.14 5.27 7.01 42.14 0.30 5.57 16 3 C -0.32 -10.68 5.17 -20.15 -0.10 -10.79 16 4 C 0.62 18.29 7.36 86.67 0.64 18.92 16 5 O -0.57 -19.86 15.54 -4.03 -0.06 -19.92 16 6 N -0.61 -13.53 3.01 -820.41 -2.47 -16.01 16 7 C 0.06 1.11 5.98 86.36 0.52 1.63 16 8 C 0.05 0.81 6.99 72.08 0.50 1.31 16 9 O -0.37 -7.57 9.92 -129.98 -1.29 -8.86 16 10 C 0.09 1.60 3.31 30.09 0.10 1.70 16 11 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 12 C 0.50 9.13 7.66 71.24 0.55 9.68 16 13 O -0.53 -13.26 17.27 28.37 0.49 -12.77 16 14 O -0.50 -5.85 13.42 -51.44 -0.69 -6.54 16 15 C 0.10 1.90 5.92 86.49 0.51 2.41 16 16 C 0.08 2.38 9.65 85.65 0.83 3.20 16 17 N -0.33 -13.46 12.50 -56.27 -0.70 -14.16 16 18 N -0.34 -14.61 3.56 -336.71 -1.20 -15.81 16 19 C 0.27 13.26 5.97 85.63 0.51 13.77 16 20 C -0.55 -28.92 9.39 25.60 0.24 -28.68 16 21 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 22 C 0.02 1.19 5.46 84.65 0.46 1.65 16 23 N -0.92 -50.25 13.29 21.45 0.28 -49.97 16 24 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.10 2.98 7.04 -2.38 -0.02 2.96 16 30 H 0.07 2.49 7.05 -2.38 -0.02 2.47 16 31 H 0.11 2.07 4.69 -2.39 -0.01 2.06 16 32 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.44 1.12 9.10 -74.06 -0.67 0.45 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 2.26 7.11 -2.39 -0.02 2.25 16 38 H 0.22 4.68 7.54 -2.91 -0.02 4.66 16 39 H 0.05 2.44 7.02 -2.39 -0.02 2.43 16 40 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -71.64 351.81 2.55 -69.08 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.42 Total: 14.06 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.75 Total: 18.07 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -4.09 Total: -95.94 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -1.55 Total: -48.09 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -71.64 2.55 -69.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607506931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.392 kcal (2) G-P(sol) polarization free energy of solvation -71.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds