Wall clock time and date at job start Tue Mar 31 2020 14:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38042 * 126.29147 * 2 1 4 4 C 1.47430 * 126.41656 * 359.97438 * 3 2 1 5 5 O 1.21604 * 119.99780 * 0.28090 * 4 3 2 6 6 N 1.34779 * 120.00124 * 180.28073 * 4 3 2 7 7 C 1.46497 * 120.00025 * 180.02562 * 6 4 3 8 8 H 1.09006 * 110.45716 * 327.60622 * 7 6 4 9 9 C 1.54515 * 110.51103 * 90.35132 * 7 6 4 10 10 C 1.54485 * 104.06007 * 118.64602 * 9 7 6 11 11 O 1.44426 * 104.80060 * 336.02129 * 10 9 7 12 12 C 1.44423 * 105.27610 * 40.51620 * 11 10 9 13 13 H 1.09001 * 110.37977 * 78.31754 * 12 11 10 14 14 C 1.50710 * 110.37295 * 200.65608 * 12 11 10 15 15 O 1.20825 * 119.99802 * 0.37546 * 14 12 11 16 16 O 1.34229 * 119.99945 * 180.37594 * 14 12 11 17 17 C 1.41290 * 107.17161 * 180.24547 * 3 2 1 18 18 N 1.30457 * 108.02166 * 359.78214 * 17 3 2 19 19 N 1.34255 * 126.29154 * 179.86786 * 2 1 3 20 20 C 1.46507 * 125.75429 * 0.02562 * 19 2 1 21 21 C 1.50697 * 109.47006 * 269.71862 * 20 19 2 22 22 H 1.07991 * 120.00449 * 359.72165 * 21 20 19 23 23 C 1.37885 * 119.99686 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99913 * 359.72095 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 179.72528 * 23 21 20 26 26 H 1.48490 * 109.47339 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47239 * 120.00108 * 25 23 21 28 28 H 1.48504 * 109.46636 * 239.99667 * 25 23 21 29 29 H 1.08998 * 109.46955 * 270.13355 * 1 2 3 30 30 H 1.08997 * 109.46976 * 30.12972 * 1 2 3 31 31 H 1.08998 * 109.47053 * 150.13149 * 1 2 3 32 32 H 0.96999 * 119.99669 * 359.97438 * 6 4 3 33 33 H 1.08997 * 110.51274 * 237.28988 * 9 7 6 34 34 H 1.09001 * 110.51149 * 0.02562 * 9 7 6 35 35 H 1.09000 * 110.37127 * 217.19148 * 10 9 7 36 36 H 1.09000 * 110.46588 * 94.89624 * 10 9 7 37 37 H 0.96699 * 116.99416 * 179.97438 * 16 14 12 38 38 H 1.07997 * 125.98878 * 179.79690 * 17 3 2 39 39 H 1.08998 * 109.47049 * 149.71291 * 20 19 2 40 40 H 1.09001 * 109.46896 * 29.71562 * 20 19 2 41 41 H 0.97000 * 119.99651 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 0.0041 6 7 2.8000 3.5107 -0.0062 7 6 2.3645 4.9095 -0.0061 8 1 1.4253 5.0161 -0.5491 9 6 2.2188 5.4311 1.4410 10 6 3.2363 6.5903 1.5263 11 8 4.2141 6.2990 0.5041 12 6 3.4528 5.8152 -0.6238 13 1 2.9951 6.6479 -1.1581 14 6 4.3354 5.0181 -1.5495 15 8 5.5036 4.8612 -1.2840 16 8 3.8236 4.4825 -2.6689 17 6 3.6590 0.6499 -0.0058 18 7 3.6340 -0.6545 -0.0043 19 7 2.3017 -1.0821 0.0025 20 6 1.8501 -2.4758 0.0052 21 6 1.7013 -2.9529 1.4269 22 1 1.9255 -2.2864 2.2464 23 6 1.2840 -4.2423 1.6813 24 7 1.0105 -5.0539 0.6832 25 14 1.1071 -4.8361 3.4435 26 1 1.4734 -3.7390 4.3747 27 1 -0.2990 -5.2455 3.6890 28 1 2.0068 -5.9961 3.6676 29 1 -0.3633 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5118 32 1 3.7462 3.2973 -0.0095 33 1 1.2070 5.7974 1.6149 34 1 2.4712 4.6483 2.1563 35 1 3.7085 6.6092 2.5086 36 1 2.7469 7.5428 1.3229 37 1 4.4287 3.9799 -3.2313 38 1 4.5449 1.2676 -0.0104 39 1 2.5824 -3.0961 -0.5116 40 1 0.8892 -2.5474 -0.5044 41 1 0.7166 -5.9608 0.8622 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607509642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:15 Heat of formation + Delta-G solvation = -122.597972 kcal Electronic energy + Delta-G solvation = -27568.889977 eV Core-core repulsion = 23449.513041 eV Total energy + Delta-G solvation = -4119.376935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42177 -41.88238 -40.33970 -39.45762 -37.13945 -35.86805 -35.58692 -33.87385 -32.84075 -31.93872 -30.86657 -29.09888 -28.16705 -25.67160 -25.11344 -23.70572 -22.70989 -22.08929 -21.32202 -20.63412 -19.11089 -18.91454 -18.75164 -18.29125 -17.40586 -17.01401 -16.73340 -16.56797 -16.36230 -16.10335 -15.89669 -15.65984 -15.37816 -15.18607 -14.67730 -14.27327 -14.10004 -14.04913 -13.70281 -13.60304 -13.45822 -13.10657 -12.98193 -12.80334 -12.74407 -12.71427 -12.51076 -12.34094 -12.17918 -11.84928 -11.76147 -11.61613 -11.00902 -10.84282 -10.77168 -10.30446 -10.20652 -9.49879 -8.39225 -6.55415 0.64818 1.02206 1.26502 1.35751 1.37999 1.48644 1.59078 1.66490 2.18331 2.31982 2.47318 2.93088 2.93573 3.38717 3.66848 3.71594 3.73929 3.96372 4.07389 4.12061 4.14208 4.20807 4.29426 4.43276 4.58121 4.63452 4.78672 4.82320 4.87357 4.91592 5.04119 5.09963 5.15453 5.35905 5.48095 5.49069 5.59897 5.65423 5.73489 6.02605 6.40440 6.53665 6.79231 6.89901 7.15800 7.24309 8.68971 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021129 B = 0.002945 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.846874 B = 9505.503313 C = 9847.056297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.150 3.850 3 C -0.332 4.332 4 C 0.616 3.384 5 O -0.567 6.567 6 N -0.717 5.717 7 C 0.128 3.872 8 H 0.125 0.875 9 C -0.165 4.165 10 C 0.046 3.954 11 O -0.371 6.371 12 C 0.078 3.922 13 H 0.157 0.843 14 C 0.487 3.513 15 O -0.531 6.531 16 O -0.501 6.501 17 C 0.076 3.924 18 N -0.335 5.335 19 N -0.336 5.336 20 C 0.267 3.733 21 C -0.556 4.556 22 H 0.051 0.949 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.267 1.267 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.401 0.599 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.432 0.568 38 H 0.211 0.789 39 H 0.031 0.969 40 H 0.054 0.946 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 24.196 -2.963 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.014 3.986 3 C -0.348 4.348 4 C 0.406 3.594 5 O -0.448 6.448 6 N -0.370 5.370 7 C 0.023 3.977 8 H 0.143 0.857 9 C -0.203 4.203 10 C -0.030 4.030 11 O -0.290 6.290 12 C 0.019 3.981 13 H 0.174 0.826 14 C 0.329 3.671 15 O -0.420 6.420 16 O -0.315 6.315 17 C -0.111 4.111 18 N -0.154 5.154 19 N -0.113 5.113 20 C 0.148 3.852 21 C -0.594 4.594 22 H 0.069 0.931 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.796 3.204 26 H -0.198 1.198 27 H -0.192 1.192 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.294 0.706 38 H 0.228 0.772 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.982 23.151 -2.702 23.328 hybrid contribution 0.481 -0.728 0.368 0.947 sum 1.463 22.423 -2.334 22.592 Atomic orbital electron populations 1.20578 0.85451 1.04262 1.04077 1.22002 0.96060 0.86482 0.94026 1.19925 0.92936 0.93289 1.28600 1.16952 0.84959 0.83453 0.74047 1.90682 1.17202 1.84454 1.52415 1.45722 1.09521 1.05207 1.76501 1.22390 0.98111 0.79676 0.97563 0.85712 1.23461 1.02385 0.99124 0.95368 1.23765 0.89043 0.97982 0.92217 1.89272 1.30753 1.84864 1.24095 1.22935 0.89287 0.97317 0.88574 0.82564 1.23003 0.86499 0.76891 0.80678 1.90776 1.19515 1.57698 1.74059 1.84474 1.48095 1.65231 1.33701 1.24310 0.97576 0.91718 0.97535 1.77113 0.98534 1.14200 1.25588 1.49134 1.03260 1.07894 1.51054 1.19398 0.95375 0.72234 0.98191 1.21412 1.47850 0.98582 0.91525 0.93077 1.25724 0.93794 0.95915 1.02286 1.69999 1.44698 1.07679 1.33011 0.85292 0.78500 0.78140 0.78470 1.19795 1.19196 1.19946 0.89758 0.87598 0.90992 0.76365 0.87223 0.91032 0.87370 0.88345 0.70591 0.77241 0.95127 0.92842 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.01 9.56 71.24 0.68 -2.33 16 2 C 0.15 6.05 7.01 42.14 0.30 6.34 16 3 C -0.33 -11.70 6.13 -20.15 -0.12 -11.82 16 4 C 0.62 18.48 7.81 86.66 0.68 19.16 16 5 O -0.57 -18.95 14.49 -4.04 -0.06 -19.01 16 6 N -0.72 -16.02 4.40 -440.97 -1.94 -17.96 16 7 C 0.13 2.11 3.33 46.01 0.15 2.26 16 8 H 0.13 2.01 7.55 -2.38 -0.02 1.99 16 9 C -0.16 -2.26 6.88 31.61 0.22 -2.04 16 10 C 0.05 0.49 7.63 72.49 0.55 1.05 16 11 O -0.37 -6.59 10.91 -130.56 -1.42 -8.01 16 12 C 0.08 1.14 3.78 30.35 0.11 1.25 16 13 H 0.16 1.16 8.14 -2.39 -0.02 1.15 16 14 C 0.49 9.02 5.85 71.24 0.42 9.43 16 15 O -0.53 -13.67 17.31 28.22 0.49 -13.18 16 16 O -0.50 -7.17 13.42 -51.41 -0.69 -7.86 16 17 C 0.08 2.61 11.50 85.65 0.99 3.60 16 18 N -0.33 -14.63 12.50 -56.27 -0.70 -15.33 16 19 N -0.34 -15.48 3.56 -336.69 -1.20 -16.67 16 20 C 0.27 13.69 5.97 85.63 0.51 14.20 16 21 C -0.56 -30.54 9.39 25.60 0.24 -30.30 16 22 H 0.05 2.90 7.81 -2.92 -0.02 2.88 16 23 C 0.02 1.31 5.46 84.66 0.46 1.77 16 24 N -0.92 -50.93 13.29 21.45 0.28 -50.64 16 25 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.11 3.43 6.51 -2.39 -0.02 3.41 16 31 H 0.07 2.51 7.05 -2.39 -0.02 2.50 16 32 H 0.40 8.74 6.45 -92.71 -0.60 8.14 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.27 7.97 -2.39 -0.02 1.25 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 37 H 0.43 3.23 9.10 -74.06 -0.67 2.56 16 38 H 0.21 5.35 7.50 -2.91 -0.02 5.33 16 39 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 2.73 7.01 -2.39 -0.02 2.71 16 41 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -73.35 355.14 1.80 -71.55 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.17 Total: 19.99 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.18 Total: 12.58 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.56 Total: -100.62 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.68 Total: -48.06 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.35 1.80 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607509642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.043 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds