Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38221 * 120.01673 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97284 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47458 * 339.97599 * 5 4 3 7 7 N 1.46504 * 109.47094 * 219.97939 * 5 4 3 8 8 C 1.34770 * 120.00380 * 155.00038 * 7 5 4 9 9 O 1.21286 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00525 * 179.97438 * 8 7 5 11 11 C 1.52992 * 109.47393 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47291 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47127 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00195 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99638 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99931 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47271 * 119.99806 * 17 15 13 20 20 H 1.48495 * 109.47202 * 240.00054 * 17 15 13 21 21 C 1.50700 * 109.47440 * 99.97946 * 5 4 3 22 22 O 1.20817 * 120.00098 * 119.99410 * 21 5 4 23 23 O 1.34235 * 119.99659 * 300.00301 * 21 5 4 24 24 C 1.38265 * 120.04896 * 359.97438 * 4 3 2 25 25 C 1.38168 * 120.03012 * 0.02562 * 24 4 3 26 26 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 27 27 F 1.35102 * 120.02757 * 0.24616 * 26 2 1 28 28 H 1.09001 * 109.46710 * 269.95570 * 1 2 3 29 29 H 1.09004 * 109.46977 * 29.95209 * 1 2 3 30 30 H 1.08998 * 109.47601 * 149.95799 * 1 2 3 31 31 H 1.08001 * 119.98751 * 0.02562 * 3 2 1 32 32 H 0.97009 * 119.99869 * 334.99663 * 7 5 4 33 33 H 1.08999 * 109.46879 * 300.00324 * 10 8 7 34 34 H 1.08996 * 109.46898 * 59.99871 * 10 8 7 35 35 H 1.08999 * 109.47345 * 300.00005 * 11 10 8 36 36 H 1.08998 * 109.47324 * 60.00575 * 11 10 8 37 37 H 1.08999 * 109.46760 * 300.00155 * 12 11 10 38 38 H 1.08998 * 109.46636 * 59.99946 * 12 11 10 39 39 H 0.97005 * 119.99759 * 180.02562 * 16 15 13 40 40 H 0.96698 * 116.99750 * 179.97438 * 23 21 5 41 41 H 1.08002 * 119.98387 * 179.97438 * 24 4 3 42 42 H 1.08001 * 120.02005 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.6781 3.2999 -0.3510 7 7 5.4938 2.3977 -0.8879 8 6 6.0170 3.5068 -1.4471 9 8 5.5273 4.5918 -1.2147 10 6 7.2111 3.3989 -2.3600 11 6 7.6023 4.7927 -2.8549 12 6 8.8143 4.6832 -3.7824 13 6 9.1999 6.0561 -4.2693 14 1 8.6372 6.9205 -3.9490 15 6 10.2719 6.2089 -5.1229 16 7 10.9574 5.1563 -5.5125 17 14 10.7505 7.9108 -5.7260 18 1 9.8271 8.9192 -5.1464 19 1 12.1419 8.2125 -5.3037 20 1 10.6625 7.9538 -7.2077 21 6 4.7980 2.8140 1.3994 22 8 5.9775 2.9357 1.6311 23 8 3.9015 2.9560 2.3883 24 6 4.2732 0.0004 -0.0005 25 6 3.5842 -1.1973 -0.0005 26 6 2.1994 -1.1988 -0.0005 27 9 1.5247 -2.3693 -0.0061 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8905 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 1.6585 2.1322 0.0004 32 1 5.8856 1.5299 -1.0735 33 1 8.0465 2.9595 -1.8151 34 1 6.9609 2.7673 -3.2124 35 1 6.7670 5.2326 -3.3998 36 1 7.8527 5.4240 -2.0024 37 1 9.6497 4.2431 -3.2379 38 1 8.5634 4.0520 -4.6349 39 1 11.7118 5.2639 -6.1128 40 1 4.2473 3.1550 3.2691 41 1 5.3532 0.0018 -0.0014 42 1 4.1254 -2.1319 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607611204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = -189.950425 kcal Electronic energy + Delta-G solvation = -26296.616959 eV Core-core repulsion = 22154.399441 eV Total energy + Delta-G solvation = -4142.217518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95778 -42.03969 -40.47855 -40.13313 -37.27296 -36.39513 -36.00414 -34.07624 -33.73000 -32.52367 -29.95168 -28.36043 -27.92932 -25.75640 -24.04841 -23.30718 -22.53477 -21.50651 -21.32070 -19.23067 -18.85308 -18.54809 -18.15540 -18.02093 -17.67314 -16.93416 -16.73260 -16.70253 -16.51718 -16.45384 -15.55890 -15.18620 -14.96827 -14.69459 -14.46689 -14.36077 -14.26286 -14.20385 -13.95788 -13.75589 -13.23818 -13.11693 -12.97140 -12.73813 -12.63832 -12.57047 -12.52326 -12.37376 -12.02394 -11.97101 -11.55206 -11.49271 -11.26710 -10.92944 -10.54569 -10.49119 -9.96778 -9.65109 -8.19732 -6.29310 -0.10027 0.16256 1.04485 1.35395 1.39739 1.40125 1.53817 1.78140 2.17667 2.42085 2.62790 3.13372 3.13541 3.26198 3.59048 3.77127 3.79772 3.98985 4.14758 4.18781 4.20257 4.27658 4.31429 4.57708 4.74993 4.76913 4.78226 4.89293 4.97714 5.04996 5.08425 5.11433 5.17322 5.21624 5.26185 5.31478 5.49469 5.55325 5.76778 5.79165 5.87921 6.26975 6.33453 6.85440 6.86420 7.09118 7.39228 8.92005 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.002253 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.000430 B =12426.456780 C =12997.051005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.062 4.062 4 C -0.105 4.105 5 C 0.204 3.796 6 H 0.136 0.864 7 N -0.702 5.702 8 C 0.527 3.473 9 O -0.572 6.572 10 C -0.130 4.130 11 C -0.082 4.082 12 C 0.025 3.975 13 C -0.546 4.546 14 H 0.051 0.949 15 C 0.002 3.998 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.473 3.527 22 O -0.537 6.537 23 O -0.502 6.502 24 C -0.088 4.088 25 C -0.144 4.144 26 C 0.090 3.910 27 F -0.142 7.142 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.421 0.579 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.037 0.963 37 H -0.001 1.001 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.428 0.572 41 H 0.147 0.853 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.249 -16.058 15.200 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.106 4.106 5 C 0.096 3.904 6 H 0.153 0.847 7 N -0.357 5.357 8 C 0.316 3.684 9 O -0.450 6.450 10 C -0.169 4.169 11 C -0.121 4.121 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.314 3.686 22 O -0.426 6.426 23 O -0.315 6.315 24 C -0.106 4.106 25 C -0.162 4.162 26 C 0.071 3.929 27 F -0.121 7.121 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.175 0.825 32 H 0.260 0.740 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.017 0.983 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.290 0.710 41 H 0.164 0.836 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.315 -15.435 14.949 30.979 hybrid contribution 1.060 0.362 0.206 1.139 sum -21.255 -15.073 15.155 30.143 Atomic orbital electron populations 1.20817 0.88428 1.04229 1.03800 1.20148 0.98359 0.91257 1.02160 1.20948 0.92195 0.98547 0.96342 1.19324 0.94169 0.91958 1.05184 1.19050 0.88424 0.98855 0.84054 0.84675 1.45743 1.32143 1.10935 1.46915 1.21150 0.84392 0.83301 0.79540 1.90673 1.62611 1.28815 1.62949 1.21692 0.95404 1.00327 0.99512 1.21168 0.97922 0.94772 0.98209 1.19024 0.92693 0.95604 0.93851 1.21718 1.13931 0.94630 1.28080 0.93062 1.25908 0.96259 1.00987 0.96428 1.70072 1.20563 1.31044 1.35275 0.85451 0.78136 0.79590 0.78198 1.19223 1.20195 1.19988 1.24015 0.83990 0.71874 0.88714 1.90752 1.20229 1.47587 1.84045 1.84459 1.42179 1.82284 1.22536 1.20968 1.01094 0.90672 0.97879 1.21277 0.92045 1.00358 1.02566 1.17872 0.90580 0.81122 1.03371 1.91483 1.80521 1.46250 1.93848 0.89677 0.89260 0.91262 0.82544 0.73954 0.87552 0.86467 0.93535 0.94428 0.98253 0.97725 0.92683 0.70954 0.83581 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.84 71.23 0.70 -0.33 16 2 C -0.12 -1.51 5.89 -19.82 -0.12 -1.63 16 3 C -0.06 -0.77 9.32 22.26 0.21 -0.56 16 4 C -0.11 -1.53 4.88 -19.86 -0.10 -1.62 16 5 C 0.20 3.94 2.68 43.50 0.12 4.06 16 6 H 0.14 2.69 7.44 -2.39 -0.02 2.67 16 7 N -0.70 -15.28 4.56 -449.69 -2.05 -17.33 16 8 C 0.53 16.31 7.66 87.66 0.67 16.98 16 9 O -0.57 -22.29 15.65 -3.05 -0.05 -22.34 16 10 C -0.13 -4.16 5.70 29.85 0.17 -3.99 16 11 C -0.08 -3.62 4.44 30.59 0.14 -3.49 16 12 C 0.03 1.34 4.97 29.85 0.15 1.49 16 13 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 17 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 C 0.47 10.47 7.64 71.24 0.54 11.01 16 22 O -0.54 -16.04 17.08 21.99 0.38 -15.66 16 23 O -0.50 -7.63 13.34 -51.46 -0.69 -8.31 16 24 C -0.09 -1.13 9.05 22.26 0.20 -0.92 16 25 C -0.14 -1.81 10.03 22.31 0.22 -1.58 16 26 C 0.09 1.31 7.24 22.38 0.16 1.47 16 27 F -0.14 -2.32 16.48 44.97 0.74 -1.58 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.56 8.09 -2.38 -0.02 0.54 16 30 H 0.07 0.66 7.64 -2.39 -0.02 0.64 16 31 H 0.16 1.38 8.04 -2.91 -0.02 1.35 16 32 H 0.42 6.62 6.87 -92.70 -0.64 5.98 16 33 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.05 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.43 3.22 9.10 -74.06 -0.67 2.54 16 41 H 0.15 1.49 6.91 -2.91 -0.02 1.47 16 42 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -79.47 370.24 4.17 -75.31 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -0.24 Total: 9.28 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 3.76 Total: -10.51 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.76 Total: -73.61 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.36 Total: -46.32 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.74 Total: -1.58 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.47 4.17 -75.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607611204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.643 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds