Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38218 * 120.01395 * 2 1 4 4 C 1.38225 * 120.02208 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.96961 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47645 * 20.00114 * 5 4 3 7 7 N 1.46505 * 109.47059 * 140.00184 * 5 4 3 8 8 C 1.34774 * 120.00336 * 205.00090 * 7 5 4 9 9 O 1.21287 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00452 * 180.02562 * 8 7 5 11 11 C 1.52994 * 109.47330 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47147 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46958 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00195 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99870 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00135 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46555 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47548 * 119.99626 * 17 15 13 20 20 H 1.48500 * 109.46991 * 240.00073 * 17 15 13 21 21 C 1.50702 * 109.47196 * 259.99950 * 5 4 3 22 22 O 1.20828 * 120.00196 * 240.00287 * 21 5 4 23 23 O 1.34227 * 119.99845 * 60.00402 * 21 5 4 24 24 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 25 25 C 1.38176 * 120.02823 * 359.97438 * 24 4 3 26 26 C 1.38445 * 120.00973 * 180.02562 * 2 1 3 27 27 F 1.35093 * 120.02545 * 359.70522 * 26 2 1 28 28 H 1.09003 * 109.47584 * 269.97527 * 1 2 3 29 29 H 1.09004 * 109.47177 * 29.97732 * 1 2 3 30 30 H 1.09004 * 109.47536 * 149.97191 * 1 2 3 31 31 H 1.07992 * 119.98884 * 0.02673 * 3 2 1 32 32 H 0.97000 * 119.99539 * 24.99854 * 7 5 4 33 33 H 1.09010 * 109.46508 * 299.99509 * 10 8 7 34 34 H 1.08992 * 109.47377 * 59.99203 * 10 8 7 35 35 H 1.08997 * 109.46973 * 299.99594 * 11 10 8 36 36 H 1.08997 * 109.47628 * 59.99781 * 11 10 8 37 37 H 1.09002 * 109.46524 * 299.99819 * 12 11 10 38 38 H 1.08997 * 109.46916 * 59.99492 * 12 11 10 39 39 H 0.97004 * 120.00093 * 179.97438 * 16 15 13 40 40 H 0.96701 * 116.99724 * 180.02562 * 23 21 5 41 41 H 1.08000 * 119.98569 * 179.97438 * 24 4 3 42 42 H 1.08000 * 120.01901 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3332 2.5026 -0.0011 6 1 3.6783 3.2998 0.3504 7 7 5.4942 2.3975 0.8863 8 6 6.0176 3.5064 1.4455 9 8 5.5278 4.5914 1.2137 10 6 7.2122 3.3983 2.3578 11 6 7.6036 4.7920 2.8529 12 6 8.8160 4.6821 3.7798 13 6 9.2019 6.0549 4.2669 14 1 8.6390 6.9194 3.9472 15 6 10.2742 6.2075 5.1200 16 7 10.9600 5.1549 5.5091 17 14 10.7531 7.9093 5.7234 18 1 9.8301 8.9178 5.1435 19 1 10.6658 7.9519 7.2052 20 1 12.1442 8.2111 5.3006 21 6 4.7973 2.8143 -1.4006 22 8 5.9768 2.9361 -1.6329 23 8 3.9004 2.9567 -2.3890 24 6 4.2732 0.0004 -0.0005 25 6 3.5842 -1.1973 0.0005 26 6 2.1994 -1.1989 -0.0005 27 9 1.5246 -2.3692 0.0050 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 1.6584 2.1321 0.0004 32 1 5.8860 1.5297 1.0714 33 1 6.9622 2.7664 3.2102 34 1 8.0473 2.9590 1.8125 35 1 7.8536 5.4234 2.0004 36 1 6.7685 5.2317 3.3983 37 1 8.5655 4.0507 4.6323 38 1 9.6512 4.2422 3.2348 39 1 11.7147 5.2623 6.1090 40 1 4.2459 3.1559 -3.2700 41 1 5.3532 0.0018 -0.0014 42 1 4.1254 -2.1320 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607611207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = -165.883794 kcal Electronic energy + Delta-G solvation = -26295.579301 eV Core-core repulsion = 22154.405391 eV Total energy + Delta-G solvation = -4141.173911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.34114 -41.14130 -39.55330 -39.22900 -36.39760 -35.34611 -34.18539 -33.17857 -32.19416 -31.56869 -28.51925 -27.48068 -27.08026 -23.94798 -23.33121 -22.57765 -21.25209 -20.49137 -19.85780 -18.38477 -18.06066 -17.44698 -17.10696 -17.01179 -16.20405 -16.10433 -15.90922 -15.74151 -15.21741 -14.91387 -14.44718 -14.22220 -13.96774 -13.84186 -13.69911 -13.60972 -13.42609 -13.03329 -12.70790 -12.36287 -12.27729 -12.16983 -11.79885 -11.70789 -11.48898 -11.37566 -11.00566 -10.81570 -10.60961 -10.51232 -9.87041 -9.69187 -9.48363 -9.39065 -9.29944 -9.06370 -8.98438 -8.31185 -5.96656 -3.97865 0.50631 0.69762 1.93860 2.35528 2.82499 2.95532 3.34597 3.39646 3.41916 3.47720 3.74765 3.92223 4.13717 4.27670 4.50356 4.60938 4.69967 4.78359 4.95406 5.04814 5.14487 5.16856 5.26764 5.39574 5.42801 5.57754 5.62762 5.68087 5.70679 5.75722 5.82620 6.10505 6.22788 6.24348 6.34238 6.72702 6.92535 7.16351 7.33971 7.62633 7.72219 7.84792 8.04085 8.25867 8.48036 9.09415 9.66085 11.14891 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002253 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.062572 B =12426.197643 C =12996.917010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 C -0.062 4.062 4 C -0.101 4.101 5 C 0.203 3.797 6 H 0.136 0.864 7 N -0.719 5.719 8 C 0.523 3.477 9 O -0.530 6.530 10 C -0.136 4.136 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.469 3.531 22 O -0.495 6.495 23 O -0.513 6.513 24 C -0.085 4.085 25 C -0.144 4.144 26 C 0.105 3.895 27 F -0.136 7.136 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.407 0.593 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.411 0.589 41 H 0.136 0.864 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.257 -15.661 -14.861 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.102 4.102 5 C 0.095 3.905 6 H 0.153 0.847 7 N -0.375 5.375 8 C 0.312 3.688 9 O -0.405 6.405 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.308 3.692 22 O -0.381 6.381 23 O -0.325 6.325 24 C -0.103 4.103 25 C -0.162 4.162 26 C 0.085 3.915 27 F -0.114 7.114 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.243 0.757 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.270 0.730 41 H 0.153 0.847 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.292 -14.985 -14.581 29.842 hybrid contribution 0.810 0.304 -0.228 0.895 sum -20.482 -14.682 -14.809 29.230 Atomic orbital electron populations 1.20759 0.89654 1.03639 1.03174 1.19933 0.97353 0.91574 1.02767 1.20771 0.92504 0.97820 0.96922 1.19461 0.93906 0.92945 1.03920 1.18965 0.89086 0.97494 0.84911 0.84677 1.46021 1.32222 1.11423 1.47839 1.21430 0.84750 0.83012 0.79617 1.90687 1.61352 1.27114 1.61334 1.21858 0.94281 1.03320 0.98106 1.21465 1.00204 0.91705 0.99960 1.19138 0.91564 0.97243 0.93763 1.21304 1.13330 0.93438 1.27417 0.92522 1.25024 0.96423 0.96712 0.96412 1.69973 1.20090 1.28839 1.34833 0.86538 0.78331 0.84718 0.78460 1.19692 1.21045 1.21055 1.23859 0.84434 0.72989 0.87918 1.90763 1.18597 1.45460 1.83255 1.84500 1.43093 1.83065 1.21797 1.20834 1.00463 0.90910 0.98125 1.21100 0.92211 0.99728 1.03208 1.17614 0.90060 0.81032 1.02768 1.91497 1.80342 1.45861 1.93721 0.90455 0.90550 0.91042 0.84126 0.75677 0.88986 0.88912 0.92619 0.92609 0.96538 0.96544 0.93130 0.73035 0.84672 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 9.83 36.00 0.35 -0.27 16 2 C -0.12 -0.84 5.89 -104.56 -0.62 -1.46 16 3 C -0.06 -0.45 9.32 -39.59 -0.37 -0.82 16 4 C -0.10 -0.83 4.88 -104.62 -0.51 -1.34 16 5 C 0.20 2.11 2.68 -70.23 -0.19 1.92 16 6 H 0.14 1.42 7.44 -51.93 -0.39 1.04 16 7 N -0.72 -8.32 4.56 -56.06 -0.26 -8.57 16 8 C 0.52 8.26 7.66 -10.99 -0.08 8.18 16 9 O -0.53 -10.30 15.65 5.55 0.09 -10.22 16 10 C -0.14 -2.23 5.70 -27.89 -0.16 -2.38 16 11 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 17 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.47 5.46 7.64 36.01 0.28 5.74 16 22 O -0.49 -7.54 17.08 -18.75 -0.32 -7.86 16 23 O -0.51 -4.35 13.34 -39.25 -0.52 -4.87 16 24 C -0.08 -0.63 9.05 -39.60 -0.36 -0.98 16 25 C -0.14 -1.03 10.03 -39.51 -0.40 -1.43 16 26 C 0.10 0.84 7.24 -39.41 -0.29 0.56 16 27 F -0.14 -1.18 16.48 2.25 0.04 -1.15 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.38 7.64 -51.93 -0.40 -0.01 16 31 H 0.14 0.78 8.03 -52.49 -0.42 0.36 16 32 H 0.41 3.59 6.87 -40.82 -0.28 3.31 16 33 H 0.09 1.32 8.14 -51.92 -0.42 0.89 16 34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 40 H 0.41 1.91 9.10 45.56 0.41 2.32 16 41 H 0.14 0.83 6.92 -52.49 -0.36 0.47 16 42 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -36.70 370.25 -7.46 -44.16 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.77 Total: 0.16 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -3.01 Total: -7.89 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.48 Total: -35.01 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.76 Total: -22.95 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.70 -7.46 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607611207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.724 kcal (2) G-P(sol) polarization free energy of solvation -36.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds