Wall clock time and date at job start Tue Mar 31 2020 14:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35212 * 125.40971 * 2 1 4 4 C 1.40507 * 107.95732 * 180.15305 * 3 2 1 5 5 N 1.39260 * 126.56030 * 179.87090 * 4 3 2 6 6 C 1.34769 * 120.00045 * 359.68350 * 5 4 3 7 7 O 1.21364 * 120.00503 * 0.02562 * 6 5 4 8 8 C 1.49359 * 119.99707 * 180.02562 * 6 5 4 9 9 O 1.21358 * 119.99913 * 354.60333 * 8 6 5 10 10 N 1.34770 * 119.99925 * 174.32912 * 8 6 5 11 11 C 1.46503 * 120.00313 * 354.69763 * 10 8 6 12 12 C 1.46499 * 120.00227 * 174.69730 * 10 8 6 13 13 H 1.08998 * 109.47013 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.47188 * 240.00283 * 12 10 8 15 15 C 1.50696 * 109.47405 * 120.00112 * 12 10 8 16 16 H 1.08000 * 119.99785 * 5.29189 * 15 12 10 17 17 C 1.37881 * 120.00085 * 185.29758 * 15 12 10 18 18 N 1.31510 * 119.99709 * 7.50960 * 17 15 12 19 19 Si 1.86800 * 119.99882 * 187.50794 * 17 15 12 20 20 H 1.48500 * 109.46861 * 94.98964 * 19 17 15 21 21 H 1.48499 * 109.46763 * 214.98711 * 19 17 15 22 22 H 1.48492 * 109.47372 * 334.98521 * 19 17 15 23 23 C 1.38882 * 106.86860 * 359.60093 * 4 3 2 24 24 C 1.41586 * 126.35471 * 180.27564 * 23 4 3 25 25 O 1.21696 * 120.00229 * 0.02562 * 24 23 4 26 26 O 1.34975 * 119.99784 * 180.02562 * 24 23 4 27 27 N 1.35626 * 125.41104 * 179.71197 * 2 1 3 28 28 H 0.97003 * 125.64366 * 359.95484 * 27 2 1 29 29 H 1.09002 * 109.47209 * 270.26386 * 1 2 3 30 30 H 1.08993 * 109.47203 * 30.26907 * 1 2 3 31 31 H 1.09005 * 109.46987 * 150.26448 * 1 2 3 32 32 H 1.08001 * 126.01741 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99080 * 179.68431 * 5 4 3 34 34 H 1.08997 * 109.47172 * 85.69928 * 11 10 8 35 35 H 1.08993 * 109.47283 * 205.70460 * 11 10 8 36 36 H 1.09006 * 109.47029 * 325.70100 * 11 10 8 37 37 H 1.09006 * 109.46913 * 303.33638 * 14 12 10 38 38 H 1.08998 * 109.47270 * 63.33663 * 14 12 10 39 39 H 1.09004 * 109.47186 * 183.33585 * 14 12 10 40 40 H 0.97003 * 120.00104 * 180.02562 * 18 17 15 41 41 H 0.96699 * 114.00341 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2905 1.1020 0.0000 4 6 3.6309 0.6806 -0.0036 5 7 4.7577 1.4989 -0.0073 6 6 4.6171 2.8392 -0.0141 7 8 3.5085 3.3332 -0.0166 8 6 5.8257 3.7168 -0.0187 9 8 6.9315 3.2272 0.0826 10 7 5.6885 5.0519 -0.1408 11 6 4.3662 5.6332 -0.3855 12 6 6.8617 5.9222 -0.0290 13 1 7.7485 5.3149 0.1521 14 6 6.6651 6.8962 1.1344 15 6 7.0360 6.6975 -1.3093 16 1 6.2957 6.6210 -2.0920 17 6 8.1407 7.5044 -1.4817 18 7 9.1134 7.4854 -0.5968 19 14 8.2557 8.6246 -2.9722 20 1 7.7631 9.9787 -2.6128 21 1 9.6699 8.7139 -3.4162 22 1 7.4255 8.0716 -4.0722 23 6 3.6167 -0.7081 0.0036 24 6 4.7484 -1.5589 0.0086 25 8 5.8682 -1.0823 0.0072 26 8 4.5854 -2.8988 0.0148 27 7 2.2929 -1.1054 0.0056 28 1 1.9780 -2.0228 0.0108 29 1 -0.3634 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9465 2.1258 0.0004 33 1 5.6437 1.1041 -0.0049 34 1 3.8539 5.7835 0.5647 35 1 4.4786 6.5910 -0.8932 36 1 3.7821 4.9572 -1.0102 37 1 5.7459 7.4623 0.9828 38 1 6.5983 6.3382 2.0683 39 1 7.5109 7.5823 1.1808 40 1 9.8904 8.0533 -0.7178 41 1 5.4147 -3.3960 0.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607670784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:13 Heat of formation + Delta-G solvation = -105.067199 kcal Electronic energy + Delta-G solvation = -27394.390249 eV Core-core repulsion = 23275.773505 eV Total energy + Delta-G solvation = -4118.616744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97961 -40.26546 -39.78661 -38.06278 -36.40406 -35.79818 -34.65900 -32.71454 -32.01408 -30.42397 -29.56499 -27.72074 -26.27936 -25.27638 -24.90190 -23.08102 -21.22134 -21.09910 -19.88974 -19.08929 -18.69804 -17.70601 -17.14234 -16.49487 -16.38739 -16.18519 -15.69816 -15.40089 -14.94826 -14.85207 -14.69315 -14.31939 -13.90962 -13.71322 -13.26546 -13.15024 -12.95263 -12.86946 -12.49338 -12.34585 -12.30466 -11.79930 -11.73189 -11.66550 -11.09914 -11.03829 -10.94941 -10.89507 -10.75188 -10.61267 -10.31974 -10.17476 -9.24128 -8.78723 -8.67958 -8.43397 -8.03838 -7.71413 -6.10496 -4.16265 0.75899 1.84996 2.45324 2.48771 2.94748 3.01669 3.08101 3.27689 3.35088 3.38268 3.77670 4.04759 4.38863 4.49850 4.67555 4.85807 5.01237 5.17308 5.22418 5.24209 5.44516 5.52039 5.74251 5.98472 6.08128 6.17224 6.24407 6.42680 6.56876 6.65877 6.72680 6.78967 6.92986 7.07184 7.17026 7.34833 7.44570 7.63224 7.64285 7.83732 7.98753 8.10263 8.36581 8.64922 8.89066 9.48704 10.97004 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019396 B = 0.003018 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.270685 B = 9274.288612 C =10032.323429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.093 3.907 3 C -0.219 4.219 4 C 0.198 3.802 5 N -0.620 5.620 6 C 0.509 3.491 7 O -0.495 6.495 8 C 0.494 3.506 9 O -0.527 6.527 10 N -0.553 5.553 11 C 0.080 3.920 12 C 0.253 3.747 13 H 0.073 0.927 14 C -0.141 4.141 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.106 4.106 24 C 0.550 3.450 25 O -0.516 6.516 26 O -0.517 6.517 27 N -0.528 5.528 28 H 0.425 0.575 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.176 0.824 33 H 0.433 0.567 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.264 0.736 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.410 -17.457 2.145 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.245 4.245 4 C 0.091 3.909 5 N -0.267 5.267 6 C 0.293 3.707 7 O -0.369 6.369 8 C 0.274 3.726 9 O -0.405 6.405 10 N -0.284 5.284 11 C -0.063 4.063 12 C 0.154 3.846 13 H 0.090 0.910 14 C -0.200 4.200 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.216 4.216 24 C 0.398 3.602 25 O -0.406 6.406 26 O -0.328 6.328 27 N -0.128 5.128 28 H 0.263 0.737 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.275 0.725 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -17.385 -16.991 2.235 24.412 hybrid contribution 0.962 -0.368 -0.765 1.283 sum -16.424 -17.360 1.470 23.943 Atomic orbital electron populations 1.20501 0.86895 1.04086 1.03540 1.20700 0.94159 0.85701 1.02149 1.21171 0.89213 1.00149 1.13936 1.17398 0.88299 0.87258 0.97928 1.42894 1.09575 1.05427 1.68776 1.20982 0.90877 0.82364 0.76464 1.90595 1.26880 1.73792 1.45585 1.19532 0.87959 0.84018 0.81070 1.90760 1.25798 1.73737 1.50236 1.48219 1.11342 1.04390 1.64406 1.21976 0.83175 1.00148 1.01029 1.19174 0.82686 0.87839 0.94943 0.90968 1.22030 1.01681 1.00178 0.96109 1.21260 1.07656 1.26780 1.01159 0.91899 1.24897 0.94902 0.97051 0.96732 1.69957 1.07679 1.38704 1.35821 0.86475 0.77428 0.80858 0.82642 1.20547 1.21129 1.19806 1.17416 0.83200 0.91044 1.29968 1.18052 0.87730 0.80848 0.73529 1.90985 1.25190 1.76048 1.48382 1.84972 1.41559 1.19381 1.86928 1.41657 1.04210 1.08688 1.58241 0.73662 0.90027 0.89106 0.91164 0.80673 0.72512 0.93184 0.90463 0.90547 0.94593 0.96392 0.90009 0.92590 0.72975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.41 36.01 0.37 -0.09 16 2 C 0.09 0.84 7.11 -81.99 -0.58 0.26 16 3 C -0.22 -2.75 9.50 -39.80 -0.38 -3.13 16 4 C 0.20 2.89 6.91 -83.39 -0.58 2.32 16 5 N -0.62 -10.46 5.37 -10.04 -0.05 -10.51 16 6 C 0.51 9.40 7.67 -11.63 -0.09 9.31 16 7 O -0.49 -8.71 10.53 5.48 0.06 -8.65 16 8 C 0.49 10.84 7.72 -11.63 -0.09 10.75 16 9 O -0.53 -13.04 15.83 5.49 0.09 -12.95 16 10 N -0.55 -12.34 2.75 -175.81 -0.48 -12.83 16 11 C 0.08 1.49 8.14 59.85 0.49 1.98 16 12 C 0.25 6.49 2.49 -69.09 -0.17 6.32 16 13 H 0.07 2.13 6.88 -51.93 -0.36 1.77 16 14 C -0.14 -3.33 9.11 37.16 0.34 -2.99 16 15 C -0.53 -14.35 7.98 -34.44 -0.27 -14.63 16 16 H 0.06 1.68 7.23 -52.49 -0.38 1.30 16 17 C 0.07 1.84 5.21 -17.82 -0.09 1.75 16 18 N -0.88 -25.15 12.05 55.43 0.67 -24.48 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.11 -1.31 6.92 -83.47 -0.58 -1.89 16 24 C 0.55 6.72 8.08 32.01 0.26 6.98 16 25 O -0.52 -7.95 15.70 -19.42 -0.30 -8.26 16 26 O -0.52 -4.21 13.52 -41.25 -0.56 -4.77 16 27 N -0.53 -4.62 6.10 -6.71 -0.04 -4.66 16 28 H 0.42 2.40 8.96 -40.82 -0.37 2.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.18 2.34 5.96 -52.49 -0.31 2.02 16 33 H 0.43 7.67 6.28 -40.82 -0.26 7.41 16 34 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.08 1.46 6.99 -51.93 -0.36 1.09 16 36 H 0.08 1.35 5.86 -51.93 -0.30 1.04 16 37 H 0.03 0.77 7.56 -51.93 -0.39 0.38 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 2.08 6.74 -51.93 -0.35 1.73 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.41 1.75 8.98 45.56 0.41 2.15 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -33.65 350.42 -5.66 -39.32 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.92 Total: 9.59 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: -1.37 Total: 16.93 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.09 Total: -52.48 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.72 Total: -34.64 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.65 -5.66 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607670784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.752 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds