Wall clock time and date at job start Tue Mar 31 2020 14:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35212 * 125.40971 * 2 1 4 4 C 1.40507 * 107.95732 * 180.15305 * 3 2 1 5 5 N 1.39260 * 126.56030 * 179.87090 * 4 3 2 6 6 C 1.34769 * 120.00045 * 359.68350 * 5 4 3 7 7 O 1.21364 * 120.00503 * 0.02562 * 6 5 4 8 8 C 1.49359 * 119.99707 * 180.02562 * 6 5 4 9 9 O 1.21358 * 119.99913 * 354.60333 * 8 6 5 10 10 N 1.34770 * 119.99925 * 174.32912 * 8 6 5 11 11 C 1.46503 * 120.00313 * 354.69763 * 10 8 6 12 12 C 1.46499 * 120.00227 * 174.69730 * 10 8 6 13 13 H 1.08998 * 109.47013 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.47188 * 240.00283 * 12 10 8 15 15 C 1.50696 * 109.47405 * 120.00112 * 12 10 8 16 16 H 1.08000 * 119.99785 * 5.29189 * 15 12 10 17 17 C 1.37881 * 120.00085 * 185.29758 * 15 12 10 18 18 N 1.31510 * 119.99709 * 7.50960 * 17 15 12 19 19 Si 1.86800 * 119.99882 * 187.50794 * 17 15 12 20 20 H 1.48500 * 109.46861 * 94.98964 * 19 17 15 21 21 H 1.48499 * 109.46763 * 214.98711 * 19 17 15 22 22 H 1.48492 * 109.47372 * 334.98521 * 19 17 15 23 23 C 1.38882 * 106.86860 * 359.60093 * 4 3 2 24 24 C 1.41586 * 126.35471 * 180.27564 * 23 4 3 25 25 O 1.21696 * 120.00229 * 0.02562 * 24 23 4 26 26 O 1.34975 * 119.99784 * 180.02562 * 24 23 4 27 27 N 1.35626 * 125.41104 * 179.71197 * 2 1 3 28 28 H 0.97003 * 125.64366 * 359.95484 * 27 2 1 29 29 H 1.09002 * 109.47209 * 270.26386 * 1 2 3 30 30 H 1.08993 * 109.47203 * 30.26907 * 1 2 3 31 31 H 1.09005 * 109.46987 * 150.26448 * 1 2 3 32 32 H 1.08001 * 126.01741 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99080 * 179.68431 * 5 4 3 34 34 H 1.08997 * 109.47172 * 85.69928 * 11 10 8 35 35 H 1.08993 * 109.47283 * 205.70460 * 11 10 8 36 36 H 1.09006 * 109.47029 * 325.70100 * 11 10 8 37 37 H 1.09006 * 109.46913 * 303.33638 * 14 12 10 38 38 H 1.08998 * 109.47270 * 63.33663 * 14 12 10 39 39 H 1.09004 * 109.47186 * 183.33585 * 14 12 10 40 40 H 0.97003 * 120.00104 * 180.02562 * 18 17 15 41 41 H 0.96699 * 114.00341 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2905 1.1020 0.0000 4 6 3.6309 0.6806 -0.0036 5 7 4.7577 1.4989 -0.0073 6 6 4.6171 2.8392 -0.0141 7 8 3.5085 3.3332 -0.0166 8 6 5.8257 3.7168 -0.0187 9 8 6.9315 3.2272 0.0826 10 7 5.6885 5.0519 -0.1408 11 6 4.3662 5.6332 -0.3855 12 6 6.8617 5.9222 -0.0290 13 1 7.7485 5.3149 0.1521 14 6 6.6651 6.8962 1.1344 15 6 7.0360 6.6975 -1.3093 16 1 6.2957 6.6210 -2.0920 17 6 8.1407 7.5044 -1.4817 18 7 9.1134 7.4854 -0.5968 19 14 8.2557 8.6246 -2.9722 20 1 7.7631 9.9787 -2.6128 21 1 9.6699 8.7139 -3.4162 22 1 7.4255 8.0716 -4.0722 23 6 3.6167 -0.7081 0.0036 24 6 4.7484 -1.5589 0.0086 25 8 5.8682 -1.0823 0.0072 26 8 4.5854 -2.8988 0.0148 27 7 2.2929 -1.1054 0.0056 28 1 1.9780 -2.0228 0.0108 29 1 -0.3634 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 1.9465 2.1258 0.0004 33 1 5.6437 1.1041 -0.0049 34 1 3.8539 5.7835 0.5647 35 1 4.4786 6.5910 -0.8932 36 1 3.7821 4.9572 -1.0102 37 1 5.7459 7.4623 0.9828 38 1 6.5983 6.3382 2.0683 39 1 7.5109 7.5823 1.1808 40 1 9.8904 8.0533 -0.7178 41 1 5.4147 -3.3960 0.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607670784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:12 Heat of formation + Delta-G solvation = -130.925757 kcal Electronic energy + Delta-G solvation = -27395.511560 eV Core-core repulsion = 23275.773505 eV Total energy + Delta-G solvation = -4119.738055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.95444 -41.71545 -40.72079 -39.65335 -37.64210 -37.19751 -36.03527 -34.67523 -32.71871 -31.64249 -31.29695 -28.45081 -27.87205 -27.30531 -26.43151 -24.20791 -22.68636 -22.08226 -21.03658 -20.62602 -19.55917 -18.81294 -18.60619 -18.32749 -17.96404 -17.29897 -17.05145 -16.83682 -16.56193 -16.00793 -15.74396 -15.63592 -15.17186 -14.87891 -14.74143 -14.42001 -14.18830 -14.03060 -13.66146 -13.63395 -13.44991 -13.15321 -12.92644 -12.86312 -12.85498 -12.67162 -12.65973 -12.36854 -12.30029 -12.12252 -12.06965 -11.92364 -11.25489 -10.55116 -10.37271 -9.61416 -9.51753 -9.03304 -8.18566 -6.32588 -0.29534 0.46521 1.18149 1.43696 1.44347 1.54587 1.55467 1.89157 1.96814 2.27334 2.30574 2.40970 2.61234 3.11409 3.24434 3.78752 3.89501 4.35712 4.46349 4.49698 4.60782 4.68902 4.73346 4.77303 4.84556 4.86944 4.89465 4.96579 5.12267 5.24429 5.37145 5.40141 5.41406 5.59874 5.61138 5.75699 5.83913 6.00625 6.07123 6.40747 6.46514 6.62906 6.73744 6.83508 6.97063 7.37170 8.88844 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019396 B = 0.003018 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.270685 B = 9274.288612 C =10032.323429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.123 3.877 3 C -0.244 4.244 4 C 0.158 3.842 5 N -0.617 5.617 6 C 0.518 3.482 7 O -0.488 6.488 8 C 0.485 3.515 9 O -0.567 6.567 10 N -0.559 5.559 11 C 0.083 3.917 12 C 0.256 3.744 13 H 0.023 0.977 14 C -0.128 4.128 15 C -0.544 4.544 16 H 0.064 0.936 17 C 0.019 3.981 18 N -0.917 5.917 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.268 1.268 23 C -0.113 4.113 24 C 0.555 3.445 25 O -0.556 6.556 26 O -0.499 6.499 27 N -0.503 5.503 28 H 0.443 0.557 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.427 0.573 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.059 0.941 40 H 0.266 0.734 41 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.711 -18.618 1.538 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.000 4.000 3 C -0.269 4.269 4 C 0.052 3.948 5 N -0.262 5.262 6 C 0.300 3.700 7 O -0.362 6.362 8 C 0.267 3.733 9 O -0.447 6.447 10 N -0.289 5.289 11 C -0.059 4.059 12 C 0.155 3.845 13 H 0.041 0.959 14 C -0.186 4.186 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.181 4.181 18 N -0.555 5.555 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.224 4.224 24 C 0.404 3.596 25 O -0.449 6.449 26 O -0.312 6.312 27 N -0.105 5.105 28 H 0.285 0.715 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.183 0.817 33 H 0.267 0.733 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -20.761 -18.227 1.630 27.674 hybrid contribution 1.900 -0.199 -0.549 1.988 sum -18.860 -18.426 1.081 26.389 Atomic orbital electron populations 1.20705 0.83314 1.05752 1.05106 1.21208 0.95849 0.84395 0.98511 1.21197 0.88895 1.01000 1.15814 1.17773 0.88170 0.88202 1.00651 1.42715 1.10264 1.04876 1.68390 1.20076 0.89454 0.82761 0.77662 1.90588 1.25802 1.73809 1.46030 1.20185 0.88824 0.84271 0.80022 1.90726 1.27743 1.74482 1.51781 1.48218 1.11787 1.04553 1.64377 1.22121 0.81434 1.00070 1.02263 1.18849 0.82553 0.87649 0.95467 0.95877 1.21833 1.01641 0.99447 0.95721 1.21517 1.07916 1.27055 1.01719 0.91785 1.25739 0.94427 0.98355 0.99629 1.70088 1.08214 1.39465 1.37711 0.85419 0.77228 0.79189 0.79060 1.19180 1.21221 1.19288 1.17401 0.84690 0.90374 1.29917 1.18074 0.87010 0.81904 0.72604 1.90977 1.26689 1.76973 1.50310 1.84921 1.42798 1.17448 1.85991 1.41670 1.02810 1.09777 1.56225 0.71458 0.88292 0.88492 0.88487 0.81656 0.73311 0.91308 0.90583 0.89375 0.92534 0.95445 0.92188 0.92474 0.70763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.41 71.24 0.74 0.23 16 2 C 0.12 1.84 7.11 41.28 0.29 2.14 16 3 C -0.24 -5.83 9.50 22.13 0.21 -5.62 16 4 C 0.16 4.57 6.91 38.67 0.27 4.84 16 5 N -0.62 -21.51 5.37 -304.03 -1.63 -23.14 16 6 C 0.52 19.59 7.67 87.24 0.67 20.25 16 7 O -0.49 -17.09 10.53 -3.29 -0.03 -17.13 16 8 C 0.49 22.19 7.72 87.24 0.67 22.86 16 9 O -0.57 -29.83 15.83 -3.27 -0.05 -29.89 16 10 N -0.56 -25.57 2.75 -828.51 -2.28 -27.85 16 11 C 0.08 3.04 8.14 127.77 1.04 4.08 16 12 C 0.26 13.59 2.49 44.24 0.11 13.70 16 13 H 0.02 1.45 6.88 -2.39 -0.02 1.44 16 14 C -0.13 -6.13 9.11 71.98 0.66 -5.47 16 15 C -0.54 -29.98 7.98 25.60 0.20 -29.78 16 16 H 0.06 3.44 7.23 -2.91 -0.02 3.41 16 17 C 0.02 1.04 5.21 84.66 0.44 1.48 16 18 N -0.92 -53.53 12.05 21.45 0.26 -53.27 16 19 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C -0.11 -2.66 6.92 39.12 0.27 -2.39 16 24 C 0.55 13.11 8.08 68.65 0.55 13.67 16 25 O -0.56 -17.53 15.70 19.19 0.30 -17.23 16 26 O -0.50 -7.03 13.52 -58.93 -0.80 -7.83 16 27 N -0.50 -7.31 6.10 -175.13 -1.07 -8.38 16 28 H 0.44 3.23 8.96 -92.71 -0.83 2.40 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.17 4.26 5.96 -2.91 -0.02 4.24 16 33 H 0.43 15.99 6.28 -92.71 -0.58 15.40 16 34 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 35 H 0.08 2.80 6.99 -2.39 -0.02 2.78 16 36 H 0.09 3.03 5.86 -2.38 -0.01 3.02 16 37 H 0.06 2.42 7.56 -2.38 -0.02 2.40 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 3.13 6.74 -2.38 -0.02 3.11 16 40 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.43 2.76 8.98 -74.06 -0.67 2.10 16 Total: -1.00 -76.53 350.42 1.91 -74.62 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.94 Total: 24.78 kcal Atomic # 6 Polarization: 33.86 SS G_CDS: 6.13 Total: 39.99 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -4.72 Total: -112.64 kcal Atomic # 8 Polarization: -71.50 SS G_CDS: -0.58 Total: -72.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -76.53 1.91 -74.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607670784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.307 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds