Wall clock time and date at job start Tue Mar 31 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38108 * 120.04260 * 2 1 4 4 C 1.38282 * 120.07774 * 180.29671 * 3 2 1 5 5 C 1.38319 * 120.16204 * 359.67834 * 4 3 2 6 6 C 1.38059 * 120.08185 * 359.97438 * 5 4 3 7 7 C 1.38950 * 120.03849 * 179.67785 * 2 1 3 8 8 S 1.76200 * 120.08352 * 359.97438 * 7 2 1 9 9 C 1.81392 * 103.00296 * 179.72756 * 8 7 2 10 10 C 1.52999 * 109.47523 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.46883 * 54.99586 * 10 9 8 12 12 C 1.53005 * 109.46992 * 295.00430 * 10 9 8 13 13 C 1.52995 * 109.47691 * 175.00099 * 10 9 8 14 14 N 1.46497 * 109.47190 * 182.36785 * 13 10 9 15 15 C 1.36938 * 119.99964 * 265.74830 * 14 13 10 16 16 H 1.08002 * 119.99988 * 10.82425 * 15 14 13 17 17 C 1.38817 * 120.00040 * 190.83204 * 15 14 13 18 18 N 1.31612 * 120.00046 * 27.53047 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 207.52998 * 17 15 14 20 20 H 1.48502 * 109.46894 * 90.00182 * 19 17 15 21 21 H 1.48496 * 109.47133 * 209.99723 * 19 17 15 22 22 H 1.48499 * 109.47363 * 330.00092 * 19 17 15 23 23 C 1.46501 * 120.00141 * 85.75106 * 14 13 10 24 24 C 1.50700 * 109.47422 * 89.15013 * 23 14 13 25 25 O 1.20823 * 119.99867 * 357.15193 * 24 23 14 26 26 O 1.34225 * 120.00045 * 177.15336 * 24 23 14 27 27 H 1.08999 * 109.47365 * 270.32328 * 1 2 3 28 28 H 1.09000 * 109.46732 * 30.32397 * 1 2 3 29 29 H 1.08997 * 109.46909 * 150.31653 * 1 2 3 30 30 H 1.07996 * 119.95622 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.91370 * 179.70000 * 4 3 2 32 32 H 1.08000 * 119.95898 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.04320 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47309 * 300.00388 * 9 8 7 35 35 H 1.08997 * 109.47188 * 60.00333 * 9 8 7 36 36 H 1.09001 * 109.47196 * 55.07624 * 12 10 9 37 37 H 1.09003 * 109.46767 * 175.07399 * 12 10 9 38 38 H 1.08998 * 109.46910 * 295.07015 * 12 10 9 39 39 H 1.09000 * 109.47030 * 302.36650 * 13 10 9 40 40 H 1.08999 * 109.47291 * 62.36191 * 13 10 9 41 41 H 0.97000 * 119.99847 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47042 * 209.15150 * 23 14 13 43 43 H 1.08994 * 109.47001 * 329.14818 * 23 14 13 44 44 H 0.96706 * 117.00035 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1955 0.0000 4 6 3.5813 1.1964 -0.0062 5 6 4.2770 0.0009 -0.0057 6 6 3.5926 -1.1981 0.0015 7 6 2.2026 -1.2029 0.0068 8 16 1.3248 -2.7306 0.0160 9 6 2.6540 -3.9650 0.0143 10 6 2.0462 -5.3691 0.0226 11 1 1.3568 -5.4715 -0.8156 12 6 1.2904 -5.5899 1.3345 13 6 3.1617 -6.4085 -0.1045 14 7 2.5756 -7.7502 -0.1534 15 6 2.4490 -8.4845 0.9955 16 1 2.6150 -8.0181 1.9554 17 6 2.1076 -9.8282 0.9265 18 7 2.4203 -10.5327 -0.1403 19 14 1.2042 -10.6364 2.3478 20 1 -0.2606 -10.5092 2.1396 21 1 1.5716 -12.0737 2.4145 22 1 1.5834 -9.9690 3.6190 23 6 2.1249 -8.3066 -1.4316 24 6 3.2662 -9.0354 -2.0927 25 8 4.3588 -9.0415 -1.5768 26 8 3.0691 -9.6778 -3.2546 27 1 -0.3634 0.0058 1.0276 28 1 -0.3633 0.8871 -0.5189 29 1 -0.3633 -0.8928 -0.5089 30 1 1.6585 2.1308 -0.0004 31 1 4.1193 2.1328 -0.0111 32 1 5.3570 0.0054 -0.0101 33 1 4.1364 -2.1311 0.0023 34 1 3.2659 -3.8388 -0.8788 35 1 3.2739 -3.8327 0.9011 36 1 0.5535 -4.7977 1.4670 37 1 0.7848 -6.5551 1.3044 38 1 1.9944 -5.5743 2.1664 39 1 3.7266 -6.2253 -1.0185 40 1 3.8275 -6.3340 0.7552 41 1 2.1813 -11.4715 -0.1887 42 1 1.3033 -9.0011 -1.2560 43 1 1.7854 -7.4988 -2.0799 44 1 3.8312 -10.1313 -3.6403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607886411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:50 Heat of formation + Delta-G solvation = -71.705252 kcal Electronic energy + Delta-G solvation = -24796.429799 eV Core-core repulsion = 21225.552953 eV Total energy + Delta-G solvation = -3570.876847 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55785 -40.02330 -38.43891 -36.44590 -35.53691 -33.72767 -32.84097 -32.03064 -29.35621 -28.18167 -27.79216 -27.47365 -24.20058 -23.71382 -22.60238 -22.02569 -20.74542 -18.83512 -18.52735 -18.27016 -17.26533 -16.97320 -16.73889 -16.31556 -16.11549 -15.93869 -15.63083 -15.37308 -15.18628 -14.96434 -14.77749 -14.09189 -13.85198 -13.74678 -13.46359 -13.40230 -13.10116 -13.01792 -12.91171 -12.76613 -12.49396 -12.45098 -12.18977 -12.15252 -12.00822 -11.89528 -11.87895 -11.63565 -11.53364 -11.10616 -10.90599 -10.60315 -10.49078 -9.69000 -9.01254 -8.28774 -7.96829 -5.21323 0.30143 0.42417 0.60320 1.48523 1.52058 1.54924 1.58569 2.04600 2.49034 2.76946 2.81922 3.22878 3.52272 3.87959 3.90855 3.94996 4.06934 4.18763 4.26231 4.42470 4.46565 4.54425 4.58200 4.68709 4.71980 4.74658 4.79403 4.81878 4.95318 5.02003 5.04378 5.14995 5.19821 5.27715 5.29096 5.37677 5.48131 5.55846 5.59872 5.62638 5.69218 6.04117 6.17028 6.21147 7.03412 7.62693 7.82460 8.18070 9.13557 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002918 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.577397 B = 9594.631815 C =10369.272416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.110 4.110 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.147 4.147 7 C -0.107 4.107 8 S -0.116 6.116 9 C -0.093 4.093 10 C -0.078 4.078 11 H 0.072 0.928 12 C -0.130 4.130 13 C 0.160 3.840 14 N -0.575 5.575 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.050 4.050 18 N -0.927 5.927 19 Si 0.960 3.040 20 H -0.282 1.282 21 H -0.306 1.306 22 H -0.273 1.273 23 C 0.188 3.812 24 C 0.484 3.516 25 O -0.561 6.561 26 O -0.535 6.535 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 22.165 -2.327 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.171 4.171 7 C -0.219 4.219 8 S 0.129 5.871 9 C -0.241 4.241 10 C -0.100 4.100 11 H 0.090 0.910 12 C -0.188 4.188 13 C 0.033 3.967 14 N -0.295 5.295 15 C -0.376 4.376 16 H 0.101 0.899 17 C -0.245 4.245 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.209 1.209 21 H -0.234 1.234 22 H -0.198 1.198 23 C 0.058 3.942 24 C 0.326 3.674 25 O -0.451 6.451 26 O -0.346 6.346 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.362 21.882 -1.994 22.228 hybrid contribution 1.948 -1.412 0.401 2.439 sum -1.414 20.469 -1.593 20.580 Atomic orbital electron populations 1.20819 0.89877 1.03384 1.03089 1.19882 0.97016 0.91498 1.00797 1.21319 0.94694 0.97469 0.99420 1.21508 0.94427 0.98824 0.99996 1.21344 1.00920 0.91995 0.99268 1.21391 0.92686 0.99799 1.03232 1.21968 0.96727 0.97191 1.06044 1.85446 1.14219 0.95481 1.91926 1.23699 0.99162 0.95726 1.05554 1.21330 0.98331 0.90817 0.99547 0.91007 1.21703 0.99689 1.01527 0.95836 1.20887 0.92884 0.83487 0.99467 1.44152 1.69577 1.12848 1.02905 1.19512 1.39984 0.91641 0.86423 0.89935 1.25359 1.02876 0.96451 0.99809 1.69982 1.48158 1.07179 1.32112 0.85362 0.79297 0.76533 0.79877 1.20901 1.23406 1.19752 1.20304 0.92128 0.95849 0.85894 1.25439 0.90977 0.75005 0.76019 1.90475 1.29453 1.61609 1.63531 1.84556 1.46098 1.65328 1.38632 0.90429 0.89373 0.91912 0.83270 0.83319 0.84091 0.85825 0.89178 0.89375 0.92312 0.92651 0.93697 0.94198 0.93492 0.94161 0.89407 0.89398 0.74281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.57 71.24 0.68 -1.28 16 2 C -0.09 -1.78 5.90 -19.72 -0.12 -1.89 16 3 C -0.11 -1.82 9.70 22.25 0.22 -1.60 16 4 C -0.13 -2.00 10.04 22.30 0.22 -1.78 16 5 C -0.12 -2.11 10.04 22.25 0.22 -1.89 16 6 C -0.15 -3.29 9.36 22.41 0.21 -3.08 16 7 C -0.11 -2.55 6.11 22.62 0.14 -2.41 16 8 S -0.12 -2.94 18.86 -56.49 -1.07 -4.00 16 9 C -0.09 -2.39 3.78 71.98 0.27 -2.12 16 10 C -0.08 -2.41 2.61 -10.79 -0.03 -2.44 16 11 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 12 C -0.13 -4.19 8.36 71.98 0.60 -3.59 16 13 C 0.16 6.06 5.17 86.38 0.45 6.51 16 14 N -0.58 -26.48 1.78 -706.35 -1.26 -27.74 16 15 C -0.25 -12.62 8.04 84.03 0.68 -11.94 16 16 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 17 C -0.05 -2.68 4.78 84.86 0.41 -2.27 16 18 N -0.93 -52.39 9.21 21.65 0.20 -52.19 16 19 Si 0.96 43.92 29.63 68.60 2.03 45.95 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.19 8.43 5.56 85.63 0.48 8.90 16 24 C 0.48 23.03 6.31 71.24 0.45 23.48 16 25 O -0.56 -30.89 16.91 21.97 0.37 -30.51 16 26 O -0.53 -21.38 13.42 -51.37 -0.69 -22.07 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.06 1.22 6.79 -2.39 -0.02 1.20 16 30 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.12 2.67 5.88 -2.91 -0.02 2.65 16 34 H 0.09 2.18 7.75 -2.39 -0.02 2.16 16 35 H 0.09 2.21 7.75 -2.39 -0.02 2.19 16 36 H 0.06 1.71 6.98 -2.39 -0.02 1.69 16 37 H 0.05 2.06 6.88 -2.39 -0.02 2.04 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.05 1.84 8.01 -2.39 -0.02 1.82 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.09 4.31 6.49 -2.38 -0.02 4.30 16 43 H 0.09 3.27 8.08 -2.39 -0.02 3.25 16 44 H 0.40 12.67 9.10 -74.05 -0.67 12.00 16 Total: -1.00 -66.80 371.10 4.79 -62.01 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.33 Total: 25.97 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 4.87 Total: 2.59 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.06 Total: -79.93 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.32 Total: -52.59 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -1.07 Total: -4.00 kcal Total: -66.80 4.79 -62.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607886411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.693 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds