Wall clock time and date at job start Tue Mar 31 2020 14:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38095 * 120.04363 * 2 1 4 4 C 1.38282 * 120.08478 * 179.97438 * 3 2 1 5 5 C 1.38330 * 120.15992 * 0.03979 * 4 3 2 6 6 C 1.38062 * 120.07670 * 359.97438 * 5 4 3 7 7 C 1.38957 * 120.03629 * 179.72175 * 2 1 3 8 8 S 1.76194 * 120.08318 * 359.97438 * 7 2 1 9 9 C 1.81401 * 103.00221 * 179.97438 * 8 7 2 10 10 C 1.53004 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47317 * 305.00084 * 10 9 8 12 12 C 1.53000 * 109.46862 * 65.00180 * 10 9 8 13 13 C 1.52995 * 109.47064 * 184.99911 * 10 9 8 14 14 N 1.46496 * 109.47157 * 175.00425 * 13 10 9 15 15 C 1.36945 * 120.00088 * 270.00174 * 14 13 10 16 16 H 1.08000 * 119.99884 * 15.98044 * 15 14 13 17 17 C 1.38812 * 120.00186 * 195.98385 * 15 14 13 18 18 N 1.31622 * 119.99748 * 22.21949 * 17 15 14 19 19 Si 1.86797 * 119.99909 * 202.22364 * 17 15 14 20 20 H 1.48494 * 109.47165 * 90.00023 * 19 17 15 21 21 H 1.48502 * 109.46991 * 210.00006 * 19 17 15 22 22 H 1.48499 * 109.46804 * 329.99588 * 19 17 15 23 23 C 1.46497 * 120.00009 * 90.00341 * 14 13 10 24 24 C 1.50699 * 109.47637 * 84.21376 * 23 14 13 25 25 O 1.20830 * 119.99652 * 359.97438 * 24 23 14 26 26 O 1.34226 * 120.00397 * 180.02562 * 24 23 14 27 27 H 1.09001 * 109.46912 * 89.99866 * 1 2 3 28 28 H 1.09004 * 109.47105 * 210.00190 * 1 2 3 29 29 H 1.09001 * 109.46864 * 330.00398 * 1 2 3 30 30 H 1.08000 * 119.95999 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.92552 * 180.02562 * 4 3 2 32 32 H 1.07990 * 119.96191 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.04019 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47342 * 300.00012 * 9 8 7 35 35 H 1.09001 * 109.46682 * 60.00347 * 9 8 7 36 36 H 1.08998 * 109.47128 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47385 * 299.99908 * 12 10 9 38 38 H 1.09005 * 109.47455 * 59.99794 * 12 10 9 39 39 H 1.09001 * 109.47622 * 295.00706 * 13 10 9 40 40 H 1.09003 * 109.47036 * 55.00388 * 13 10 9 41 41 H 0.97000 * 119.99636 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47186 * 204.20913 * 23 14 13 43 43 H 1.08999 * 109.47503 * 324.20710 * 23 14 13 44 44 H 0.96699 * 117.00441 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1954 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2770 0.0009 0.0002 6 6 3.5925 -1.1981 -0.0001 7 6 2.2025 -1.2029 0.0058 8 16 1.3247 -2.7306 0.0139 9 6 2.6539 -3.9651 0.0189 10 6 2.0460 -5.3691 0.0268 11 1 1.3617 -5.4640 0.8698 12 6 1.2826 -5.6016 -1.2785 13 6 3.1622 -6.4074 0.1567 14 7 2.5742 -7.7431 0.2843 15 6 2.2763 -8.2447 1.5232 16 1 2.2268 -7.5836 2.3758 17 6 2.0380 -9.6028 1.6833 18 7 2.5051 -10.4613 0.8017 19 14 1.0544 -10.2119 3.1499 20 1 -0.3872 -10.2536 2.7962 21 1 1.5125 -11.5747 3.5216 22 1 1.2561 -9.2917 4.2978 23 6 2.3049 -8.5423 -0.9136 24 6 3.5581 -9.2725 -1.3226 25 8 4.5724 -9.1387 -0.6797 26 8 3.5480 -10.0708 -2.4017 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6584 2.1308 0.0004 31 1 4.1193 2.1328 0.0010 32 1 5.3569 0.0054 0.0002 33 1 4.1364 -2.1312 0.0001 34 1 3.2692 -3.8402 -0.8721 35 1 3.2705 -3.8315 0.9078 36 1 0.8499 -6.6020 -1.2731 37 1 0.4874 -4.8619 -1.3711 38 1 1.9670 -5.5068 -2.1216 39 1 3.7959 -6.3725 -0.7294 40 1 3.7613 -6.1882 1.0406 41 1 2.3388 -11.4103 0.9138 42 1 1.5173 -9.2647 -0.6990 43 1 1.9856 -7.8867 -1.7237 44 1 4.3759 -10.5178 -2.6250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607886412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:54 Heat of formation + Delta-G solvation = -55.527561 kcal Electronic energy + Delta-G solvation = -24800.762102 eV Core-core repulsion = 21230.586772 eV Total energy + Delta-G solvation = -3570.175329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.24765 -38.77526 -36.87997 -34.72778 -33.87308 -32.93538 -31.30194 -30.87121 -27.83861 -27.26054 -26.73145 -25.66116 -22.92823 -22.56780 -21.56795 -20.17337 -19.66265 -17.46163 -16.87785 -16.65087 -16.10635 -15.58342 -15.33587 -15.29983 -14.81387 -14.52499 -14.16203 -14.09870 -14.02415 -13.55158 -13.31086 -13.24246 -12.75274 -12.45883 -12.28814 -12.24293 -11.99108 -11.68539 -11.43762 -11.36655 -11.15288 -11.12015 -10.83178 -10.75977 -10.47534 -10.28362 -10.10383 -10.01153 -9.91170 -9.88042 -9.75251 -9.19015 -8.90807 -8.58171 -7.32884 -7.08172 -5.95569 -3.28254 1.11088 1.21373 1.59669 2.54539 3.34508 3.41869 3.43263 3.55348 3.87149 4.29697 4.53851 4.65474 4.71413 4.87217 4.99064 5.07737 5.11481 5.26425 5.31461 5.41907 5.47998 5.49279 5.58006 5.61030 5.73563 5.75795 5.88031 6.01873 6.05696 6.15401 6.25084 6.31658 6.32604 6.36976 6.46108 6.58799 6.77981 6.78456 6.81503 6.95356 7.01268 7.67194 7.83759 8.15403 8.99029 9.40932 9.68134 10.10286 11.15453 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002925 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.917594 B = 9569.963935 C =10297.528093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.106 4.106 4 C -0.129 4.129 5 C -0.107 4.107 6 C -0.131 4.131 7 C -0.084 4.084 8 S -0.106 6.106 9 C -0.100 4.100 10 C -0.096 4.096 11 H 0.083 0.917 12 C -0.146 4.146 13 C 0.160 3.840 14 N -0.562 5.562 15 C -0.257 4.257 16 H 0.081 0.919 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.185 3.815 24 C 0.476 3.524 25 O -0.518 6.518 26 O -0.544 6.544 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.257 0.743 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 18.729 -5.274 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.150 4.150 5 C -0.127 4.127 6 C -0.155 4.155 7 C -0.197 4.197 8 S 0.140 5.860 9 C -0.249 4.249 10 C -0.118 4.118 11 H 0.102 0.898 12 C -0.203 4.203 13 C 0.031 3.969 14 N -0.281 5.281 15 C -0.386 4.386 16 H 0.099 0.901 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.204 1.204 23 C 0.055 3.945 24 C 0.316 3.684 25 O -0.404 6.404 26 O -0.355 6.355 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.914 18.448 -4.936 19.318 hybrid contribution 1.833 -0.614 0.715 2.061 sum -1.081 17.833 -4.222 18.358 Atomic orbital electron populations 1.20801 0.90796 1.03019 1.02698 1.19558 0.96063 0.91354 1.00899 1.20953 0.94252 0.96996 1.00406 1.21110 0.94263 0.97962 1.01694 1.21038 0.99766 0.92195 0.99707 1.21247 0.92726 0.99008 1.02524 1.21883 0.96316 0.97421 1.04120 1.85522 1.14417 0.94746 1.91292 1.23896 0.99001 0.96978 1.04992 1.21659 1.00024 0.90390 0.99725 0.89825 1.21943 0.99710 1.02463 0.96203 1.20769 0.91727 0.84738 0.99695 1.43879 1.70110 1.11606 1.02524 1.19297 1.41220 0.91456 0.86578 0.90144 1.24840 1.00567 0.95706 0.98537 1.69873 1.45164 1.01756 1.38053 0.86165 0.80165 0.77847 0.81890 1.21276 1.21928 1.20425 1.20423 0.92121 0.93815 0.88109 1.25407 0.92418 0.75719 0.74889 1.90505 1.35468 1.62809 1.51579 1.84637 1.42662 1.59838 1.48323 0.90821 0.90715 0.91389 0.85877 0.86112 0.85965 0.85673 0.89867 0.89699 0.91002 0.93005 0.93453 0.94195 0.92939 0.93239 0.86960 0.92424 0.76447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.58 36.00 0.34 -0.76 16 2 C -0.07 -0.82 5.90 -104.41 -0.62 -1.44 16 3 C -0.11 -1.05 9.69 -39.62 -0.38 -1.43 16 4 C -0.13 -1.23 10.04 -39.53 -0.40 -1.63 16 5 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 6 C -0.13 -1.56 9.36 -39.36 -0.37 -1.93 16 7 C -0.08 -1.07 6.11 -39.03 -0.24 -1.31 16 8 S -0.11 -1.40 18.93 -107.50 -2.04 -3.44 16 9 C -0.10 -1.35 3.78 37.16 0.14 -1.21 16 10 C -0.10 -1.52 2.59 -90.62 -0.23 -1.76 16 11 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.15 -2.19 8.05 37.16 0.30 -1.89 16 13 C 0.16 3.09 5.13 -4.05 -0.02 3.07 16 14 N -0.56 -13.08 1.85 -174.61 -0.32 -13.41 16 15 C -0.26 -6.67 9.66 -15.06 -0.15 -6.82 16 16 H 0.08 2.05 7.92 -52.49 -0.42 1.64 16 17 C 0.00 0.04 4.86 -17.43 -0.08 -0.04 16 18 N -0.90 -25.28 9.30 55.49 0.52 -24.76 16 19 Si 0.91 21.27 29.61 -169.99 -5.03 16.23 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.18 4.16 4.73 -5.20 -0.02 4.14 16 24 C 0.48 11.31 6.54 36.00 0.24 11.54 16 25 O -0.52 -14.09 16.90 -18.75 -0.32 -14.41 16 26 O -0.54 -10.97 13.42 -39.25 -0.53 -11.50 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.78 6.77 -51.93 -0.35 0.43 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.41 5.88 -52.49 -0.31 1.11 16 34 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 35 H 0.08 1.12 7.76 -51.92 -0.40 0.72 16 36 H 0.07 1.18 5.78 -51.93 -0.30 0.88 16 37 H 0.05 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.11 2.76 6.35 -51.93 -0.33 2.43 16 43 H 0.06 1.11 5.74 -51.93 -0.30 0.81 16 44 H 0.38 6.11 9.10 45.56 0.41 6.52 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -31.44 368.69 -9.75 -41.19 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.69 Total: 7.51 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.89 Total: -2.97 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.19 Total: -38.17 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.84 Total: -25.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.04 Total: -3.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.44 -9.75 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607886412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.341 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds