Wall clock time and date at job start Tue Mar 31 2020 14:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38095 * 120.04363 * 2 1 4 4 C 1.38282 * 120.08478 * 179.97438 * 3 2 1 5 5 C 1.38330 * 120.15992 * 0.03979 * 4 3 2 6 6 C 1.38062 * 120.07670 * 359.97438 * 5 4 3 7 7 C 1.38957 * 120.03629 * 179.72175 * 2 1 3 8 8 S 1.76194 * 120.08318 * 359.97438 * 7 2 1 9 9 C 1.81401 * 103.00221 * 179.97438 * 8 7 2 10 10 C 1.53004 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47317 * 305.00084 * 10 9 8 12 12 C 1.53000 * 109.46862 * 65.00180 * 10 9 8 13 13 C 1.52995 * 109.47064 * 184.99911 * 10 9 8 14 14 N 1.46496 * 109.47157 * 175.00425 * 13 10 9 15 15 C 1.36945 * 120.00088 * 270.00174 * 14 13 10 16 16 H 1.08000 * 119.99884 * 15.98044 * 15 14 13 17 17 C 1.38812 * 120.00186 * 195.98385 * 15 14 13 18 18 N 1.31622 * 119.99748 * 22.21949 * 17 15 14 19 19 Si 1.86797 * 119.99909 * 202.22364 * 17 15 14 20 20 H 1.48494 * 109.47165 * 90.00023 * 19 17 15 21 21 H 1.48502 * 109.46991 * 210.00006 * 19 17 15 22 22 H 1.48499 * 109.46804 * 329.99588 * 19 17 15 23 23 C 1.46497 * 120.00009 * 90.00341 * 14 13 10 24 24 C 1.50699 * 109.47637 * 84.21376 * 23 14 13 25 25 O 1.20830 * 119.99652 * 359.97438 * 24 23 14 26 26 O 1.34226 * 120.00397 * 180.02562 * 24 23 14 27 27 H 1.09001 * 109.46912 * 89.99866 * 1 2 3 28 28 H 1.09004 * 109.47105 * 210.00190 * 1 2 3 29 29 H 1.09001 * 109.46864 * 330.00398 * 1 2 3 30 30 H 1.08000 * 119.95999 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.92552 * 180.02562 * 4 3 2 32 32 H 1.07990 * 119.96191 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.04019 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47342 * 300.00012 * 9 8 7 35 35 H 1.09001 * 109.46682 * 60.00347 * 9 8 7 36 36 H 1.08998 * 109.47128 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47385 * 299.99908 * 12 10 9 38 38 H 1.09005 * 109.47455 * 59.99794 * 12 10 9 39 39 H 1.09001 * 109.47622 * 295.00706 * 13 10 9 40 40 H 1.09003 * 109.47036 * 55.00388 * 13 10 9 41 41 H 0.97000 * 119.99636 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47186 * 204.20913 * 23 14 13 43 43 H 1.08999 * 109.47503 * 324.20710 * 23 14 13 44 44 H 0.96699 * 117.00441 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1954 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2770 0.0009 0.0002 6 6 3.5925 -1.1981 -0.0001 7 6 2.2025 -1.2029 0.0058 8 16 1.3247 -2.7306 0.0139 9 6 2.6539 -3.9651 0.0189 10 6 2.0460 -5.3691 0.0268 11 1 1.3617 -5.4640 0.8698 12 6 1.2826 -5.6016 -1.2785 13 6 3.1622 -6.4074 0.1567 14 7 2.5742 -7.7431 0.2843 15 6 2.2763 -8.2447 1.5232 16 1 2.2268 -7.5836 2.3758 17 6 2.0380 -9.6028 1.6833 18 7 2.5051 -10.4613 0.8017 19 14 1.0544 -10.2119 3.1499 20 1 -0.3872 -10.2536 2.7962 21 1 1.5125 -11.5747 3.5216 22 1 1.2561 -9.2917 4.2978 23 6 2.3049 -8.5423 -0.9136 24 6 3.5581 -9.2725 -1.3226 25 8 4.5724 -9.1387 -0.6797 26 8 3.5480 -10.0708 -2.4017 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6584 2.1308 0.0004 31 1 4.1193 2.1328 0.0010 32 1 5.3569 0.0054 0.0002 33 1 4.1364 -2.1312 0.0001 34 1 3.2692 -3.8402 -0.8721 35 1 3.2705 -3.8315 0.9078 36 1 0.8499 -6.6020 -1.2731 37 1 0.4874 -4.8619 -1.3711 38 1 1.9670 -5.5068 -2.1216 39 1 3.7959 -6.3725 -0.7294 40 1 3.7613 -6.1882 1.0406 41 1 2.3388 -11.4103 0.9138 42 1 1.5173 -9.2647 -0.6990 43 1 1.9856 -7.8867 -1.7237 44 1 4.3759 -10.5178 -2.6250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607886412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:54 Heat of formation + Delta-G solvation = -71.472252 kcal Electronic energy + Delta-G solvation = -24801.453515 eV Core-core repulsion = 21230.586772 eV Total energy + Delta-G solvation = -3570.866743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61055 -40.02820 -38.46685 -36.47524 -35.57426 -33.73647 -32.80771 -32.02588 -29.56957 -28.27465 -27.67517 -27.43151 -24.29786 -23.72028 -22.49540 -21.91406 -21.02876 -18.76809 -18.50508 -18.31057 -17.31172 -17.08387 -16.76310 -16.35808 -16.17891 -16.01218 -15.59332 -15.38686 -15.08710 -15.00442 -14.71572 -14.09853 -13.86347 -13.72953 -13.67134 -13.27829 -13.11677 -13.01579 -12.90669 -12.80437 -12.59183 -12.47748 -12.21634 -12.08502 -12.02008 -11.94026 -11.91339 -11.66450 -11.54027 -11.12501 -10.90814 -10.61582 -10.53870 -9.69516 -8.96528 -8.29805 -7.96517 -5.29272 0.29632 0.42006 0.59532 1.48219 1.50392 1.54164 1.57993 2.00143 2.47688 2.76451 2.77661 3.24046 3.51497 3.88848 3.90255 3.94477 4.02756 4.18272 4.25416 4.41979 4.43962 4.53755 4.59160 4.63428 4.70282 4.73006 4.78947 4.81425 4.93937 5.01471 5.02774 5.11960 5.18715 5.25880 5.28537 5.37209 5.46811 5.49907 5.55724 5.59363 5.62788 6.03670 6.13279 6.22285 7.02846 7.59032 7.80224 8.16466 9.12390 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002925 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.917594 B = 9569.963935 C =10297.528093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.109 4.109 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.148 4.148 7 C -0.107 4.107 8 S -0.117 6.117 9 C -0.092 4.092 10 C -0.081 4.081 11 H 0.065 0.935 12 C -0.140 4.140 13 C 0.161 3.839 14 N -0.575 5.575 15 C -0.259 4.259 16 H 0.079 0.921 17 C -0.048 4.048 18 N -0.930 5.930 19 Si 0.968 3.032 20 H -0.281 1.281 21 H -0.303 1.303 22 H -0.274 1.274 23 C 0.186 3.814 24 C 0.479 3.521 25 O -0.559 6.559 26 O -0.534 6.534 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 21.165 -5.801 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.171 4.171 7 C -0.219 4.219 8 S 0.129 5.871 9 C -0.241 4.241 10 C -0.103 4.103 11 H 0.083 0.917 12 C -0.198 4.198 13 C 0.033 3.967 14 N -0.295 5.295 15 C -0.389 4.389 16 H 0.096 0.904 17 C -0.243 4.243 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.207 1.207 21 H -0.230 1.230 22 H -0.198 1.198 23 C 0.057 3.943 24 C 0.320 3.680 25 O -0.448 6.448 26 O -0.346 6.346 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.228 20.915 -5.489 21.863 hybrid contribution 1.992 -1.240 0.819 2.485 sum -1.235 19.675 -4.669 20.259 Atomic orbital electron populations 1.20820 0.89873 1.03323 1.03148 1.19880 0.97022 0.91490 1.00796 1.21318 0.94695 0.97463 0.99403 1.21514 0.94424 0.98821 0.99974 1.21346 1.00922 0.91984 0.99262 1.21390 0.92687 0.99799 1.03257 1.21968 0.96725 0.97170 1.06066 1.85444 1.14231 0.95502 1.91949 1.23697 0.99140 0.95743 1.05497 1.21333 0.98381 0.90865 0.99682 0.91659 1.21877 1.00097 1.01898 0.95885 1.20859 0.92719 0.83877 0.99220 1.44032 1.70582 1.12859 1.02000 1.19546 1.40130 0.91519 0.87679 0.90368 1.25491 1.01796 0.95975 1.01031 1.70012 1.46633 1.01319 1.39689 0.85243 0.78955 0.76584 0.79478 1.20704 1.23043 1.19850 1.20454 0.91093 0.93912 0.88868 1.25594 0.92073 0.75492 0.74804 1.90485 1.36903 1.64332 1.53090 1.84561 1.43984 1.59182 1.46828 0.90253 0.92038 0.89411 0.83234 0.83279 0.84078 0.85881 0.88878 0.89771 0.92453 0.91826 0.92278 0.93819 0.94228 0.94104 0.89051 0.89015 0.74137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.58 71.24 0.68 -1.32 16 2 C -0.09 -1.80 5.90 -19.73 -0.12 -1.92 16 3 C -0.11 -1.84 9.69 22.25 0.22 -1.62 16 4 C -0.13 -2.03 10.04 22.30 0.22 -1.80 16 5 C -0.12 -2.14 10.04 22.25 0.22 -1.92 16 6 C -0.15 -3.36 9.36 22.41 0.21 -3.15 16 7 C -0.11 -2.59 6.11 22.63 0.14 -2.46 16 8 S -0.12 -3.02 18.93 -56.49 -1.07 -4.09 16 9 C -0.09 -2.44 3.78 71.98 0.27 -2.17 16 10 C -0.08 -2.55 2.59 -10.79 -0.03 -2.58 16 11 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.14 -4.07 8.05 71.98 0.58 -3.49 16 13 C 0.16 6.25 5.13 86.38 0.44 6.70 16 14 N -0.58 -27.00 1.85 -706.35 -1.31 -28.31 16 15 C -0.26 -13.64 9.66 84.03 0.81 -12.83 16 16 H 0.08 4.05 7.92 -2.91 -0.02 4.03 16 17 C -0.05 -2.59 4.86 84.86 0.41 -2.18 16 18 N -0.93 -52.87 9.30 21.65 0.20 -52.67 16 19 Si 0.97 44.35 29.61 68.60 2.03 46.38 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.19 8.38 4.73 85.63 0.41 8.78 16 24 C 0.48 22.70 6.54 71.24 0.47 23.17 16 25 O -0.56 -30.68 16.90 21.95 0.37 -30.30 16 26 O -0.53 -21.02 13.42 -51.38 -0.69 -21.71 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.23 6.77 -2.38 -0.02 1.22 16 29 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.14 1.98 8.06 -2.92 -0.02 1.96 16 33 H 0.12 2.72 5.88 -2.91 -0.02 2.70 16 34 H 0.09 2.27 7.74 -2.39 -0.02 2.25 16 35 H 0.08 2.22 7.76 -2.39 -0.02 2.20 16 36 H 0.06 1.83 5.78 -2.39 -0.01 1.82 16 37 H 0.06 1.70 7.13 -2.39 -0.02 1.68 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 40 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.09 4.55 6.35 -2.38 -0.02 4.53 16 43 H 0.09 3.44 5.74 -2.39 -0.01 3.43 16 44 H 0.40 12.37 9.10 -74.06 -0.67 11.69 16 Total: -1.00 -67.76 368.69 4.81 -62.95 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.34 Total: 26.52 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.94 Total: 1.23 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.11 Total: -80.98 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.32 Total: -52.01 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -1.07 Total: -4.09 kcal Total: -67.76 4.81 -62.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607886412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.522 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds