Wall clock time and date at job start Tue Mar 31 2020 13:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47500 * 240.00141 * 3 2 1 5 5 H 1.48500 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47169 * 120.00378 * 3 2 1 7 7 C 1.38816 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99787 * 163.06905 * 7 2 1 9 9 N 1.36936 * 120.00176 * 343.07055 * 7 2 1 10 10 C 1.46925 * 120.62825 * 331.83544 * 9 7 2 11 11 C 1.53197 * 108.77737 * 233.63157 * 10 9 7 12 12 C 1.53037 * 109.31212 * 305.36698 * 11 10 9 13 13 C 1.52993 * 109.46297 * 181.38410 * 12 11 10 14 14 N 1.46501 * 109.47328 * 174.97092 * 13 12 11 15 15 C 1.34780 * 119.99591 * 180.02562 * 14 13 12 16 16 O 1.21578 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.47504 * 119.99377 * 180.02562 * 15 14 13 18 18 C 1.36693 * 126.82405 * 179.97438 * 17 15 14 19 19 C 1.42175 * 103.78640 * 180.02562 * 18 17 15 20 20 C 1.48235 * 126.84500 * 180.02562 * 19 18 17 21 21 O 1.21404 * 119.99769 * 359.97438 * 20 19 18 22 22 O 1.34649 * 119.99764 * 179.97438 * 20 19 18 23 23 N 1.30996 * 106.30602 * 359.97438 * 19 18 17 24 24 O 1.20869 * 111.80792 * 359.69961 * 23 19 18 25 25 C 1.53043 * 109.52646 * 61.36736 * 12 11 10 26 26 C 1.46925 * 120.63264 * 151.86037 * 9 7 2 27 27 H 0.97003 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58616 * 113.84615 * 10 9 7 29 29 H 1.09005 * 109.70891 * 353.48792 * 10 9 7 30 30 H 1.08999 * 109.49652 * 185.41708 * 11 10 9 31 31 H 1.08994 * 109.52177 * 65.33330 * 11 10 9 32 32 H 1.09003 * 109.45797 * 301.35609 * 12 11 10 33 33 H 1.09009 * 109.47097 * 54.97382 * 13 12 11 34 34 H 1.09003 * 109.47315 * 294.97418 * 13 12 11 35 35 H 0.96990 * 120.00000 * 359.97438 * 14 13 12 36 36 H 1.07995 * 128.11071 * 0.03723 * 18 17 15 37 37 H 0.96695 * 116.99782 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.49486 * 58.58577 * 25 12 11 39 39 H 1.09000 * 109.49712 * 178.67314 * 25 12 11 40 40 H 1.08995 * 109.58376 * 246.15544 * 26 9 7 41 41 H 1.09003 * 109.58150 * 6.43957 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3701 -2.3626 0.3443 10 6 0.2263 -2.3409 1.2662 11 6 0.4982 -3.3202 2.4125 12 6 0.8132 -4.7016 1.8340 13 6 1.0515 -5.6906 2.9767 14 7 1.2343 -7.0365 2.4277 15 6 1.4592 -8.0767 3.2547 16 8 1.5100 -7.8982 4.4562 17 6 1.6437 -9.4317 2.7018 18 6 1.8785 -10.5792 3.4066 19 6 1.9756 -11.5802 2.4016 20 6 2.2256 -13.0265 2.6089 21 8 2.3718 -13.4623 3.7325 22 8 2.2907 -13.8568 1.5509 23 7 1.7988 -10.9697 1.2562 24 8 1.6083 -9.7852 1.4033 25 6 2.0685 -4.6172 0.9626 26 6 1.8142 -3.6529 -0.2002 27 1 -0.4850 0.8401 0.0004 28 1 -0.6768 -2.6417 0.7352 29 1 0.0965 -1.3357 1.6675 30 1 -0.3822 -3.3856 3.0517 31 1 1.3477 -2.9687 2.9980 32 1 -0.0269 -5.0419 1.2285 33 1 0.1919 -5.6853 3.6471 34 1 1.9449 -5.3991 3.5291 35 1 1.1927 -7.1790 1.4692 36 1 1.9690 -10.6977 4.4762 37 1 2.4561 -14.7914 1.7358 38 1 2.9033 -4.2531 1.5615 39 1 2.3059 -5.6058 0.5699 40 1 1.0406 -4.0606 -0.8508 41 1 2.7334 -3.5124 -0.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:39 Heat of formation + Delta-G solvation = -42.559887 kcal Electronic energy + Delta-G solvation = -26383.983867 eV Core-core repulsion = 22268.077643 eV Total energy + Delta-G solvation = -4115.906223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.79256 -40.67880 -40.03033 -37.93808 -36.82495 -35.34475 -34.67746 -33.21730 -32.51205 -30.82792 -29.78472 -27.26161 -26.42526 -24.82597 -23.65724 -23.00005 -22.23059 -21.20525 -20.92617 -19.50354 -18.91138 -18.59191 -18.57539 -17.19361 -16.80357 -16.25166 -16.21843 -16.20134 -15.48645 -14.88717 -14.54657 -14.14034 -14.08205 -14.04642 -13.68012 -13.53347 -13.21970 -12.58286 -12.44116 -12.38631 -12.32286 -11.99052 -11.62307 -11.39701 -11.29043 -11.03586 -10.76989 -10.71596 -10.57084 -10.41608 -10.29259 -10.26789 -9.95055 -9.62593 -9.51577 -9.30652 -8.48799 -6.69587 -5.81224 -3.23697 0.10366 0.53801 1.88220 2.03561 2.17377 2.59400 2.85634 3.33233 3.37194 3.43203 3.44394 4.07073 4.31880 4.43019 4.48035 4.75640 4.97141 5.11434 5.16427 5.29319 5.37582 5.53838 5.68757 5.73837 5.78250 5.94227 5.98589 6.15861 6.26857 6.38610 6.54712 6.61729 6.70018 6.75998 6.91381 6.94405 7.10777 7.30389 7.33759 7.62529 7.66570 7.77434 8.43199 9.19405 9.82779 10.39147 11.27327 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.002059 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.349993 B =13595.750767 C =13988.557198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.121 3.879 14 N -0.703 5.703 15 C 0.602 3.398 16 O -0.508 6.508 17 C -0.074 4.074 18 C -0.100 4.100 19 C -0.025 4.025 20 C 0.575 3.425 21 O -0.488 6.488 22 O -0.496 6.496 23 N -0.284 5.284 24 O 0.156 5.844 25 C -0.129 4.129 26 C 0.145 3.855 27 H 0.254 0.746 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.198 0.802 37 H 0.423 0.577 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.017 0.983 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.040 -23.078 4.559 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.110 4.110 13 C -0.002 4.002 14 N -0.354 5.354 15 C 0.383 3.617 16 O -0.384 6.384 17 C -0.139 4.139 18 C -0.123 4.123 19 C -0.181 4.181 20 C 0.415 3.585 21 O -0.374 6.374 22 O -0.308 6.308 23 N 0.023 4.977 24 O 0.067 5.933 25 C -0.168 4.168 26 C 0.018 3.982 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.215 0.785 37 H 0.283 0.717 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.939 -23.018 4.406 23.516 hybrid contribution 0.547 0.122 0.376 0.675 sum 2.487 -22.896 4.782 23.522 Atomic orbital electron populations 1.70016 1.05250 1.25643 1.53842 1.25047 0.95296 0.98430 1.00879 0.86372 0.78920 0.83346 0.78140 1.20901 1.21649 1.21024 1.19134 0.92518 0.84834 1.41797 0.91789 1.44041 1.35898 1.01535 1.50034 1.20764 0.88646 0.98168 0.87883 1.22185 1.00458 0.94443 1.00170 1.21346 0.99057 0.95348 0.95279 1.21802 1.02274 0.78931 0.97168 1.46038 1.70484 1.08077 1.10788 1.16405 0.78301 0.80827 0.86118 1.90914 1.51032 1.82922 1.13486 1.24428 1.08425 0.97863 0.83185 1.22812 0.99148 0.87839 1.02458 1.22201 1.11274 0.94327 0.90260 1.18986 0.72930 0.84309 0.82245 1.90967 1.45272 1.76504 1.24611 1.84586 1.83523 1.24830 1.37873 1.74276 1.10485 0.90372 1.22558 1.85020 1.63188 1.18612 1.26468 1.22103 0.96929 0.98882 0.98932 1.20886 0.97632 0.86991 0.92654 0.93567 0.96394 0.89367 0.92943 0.92280 0.90972 0.90914 0.90748 0.75497 0.78455 0.71657 0.92027 0.93353 0.96512 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.08 2.99 -172.32 -0.52 -14.60 16 10 C 0.17 3.82 5.30 -3.71 -0.02 3.81 16 11 C -0.13 -2.25 5.36 -26.61 -0.14 -2.40 16 12 C -0.09 -1.27 2.19 -90.58 -0.20 -1.47 16 13 C 0.12 1.42 5.06 -4.04 -0.02 1.40 16 14 N -0.70 -7.05 5.27 -61.36 -0.32 -7.38 16 15 C 0.60 6.56 7.82 -12.48 -0.10 6.46 16 16 O -0.51 -7.09 16.91 5.30 0.09 -7.00 16 17 C -0.07 -0.69 7.28 -36.37 -0.26 -0.95 16 18 C -0.10 -0.90 10.77 -38.63 -0.42 -1.31 16 19 C -0.03 -0.24 7.22 -82.60 -0.60 -0.84 16 20 C 0.57 5.03 8.36 34.84 0.29 5.33 16 21 O -0.49 -5.20 17.73 -19.19 -0.34 -5.54 16 22 O -0.50 -3.08 13.44 -40.35 -0.54 -3.63 16 23 N -0.28 -2.83 12.09 33.36 0.40 -2.43 16 24 O 0.16 1.41 11.01 15.61 0.17 1.58 16 25 C -0.13 -1.92 5.25 -26.61 -0.14 -2.06 16 26 C 0.14 2.79 6.52 -3.71 -0.02 2.77 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.41 3.37 7.47 -40.82 -0.30 3.06 16 36 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.42 0.39 9.11 45.56 0.42 0.80 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.58 7.15 -51.93 -0.37 0.21 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -32.53 354.30 -6.33 -38.85 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.34 Total: -0.31 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.86 Total: 3.82 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.19 Total: -49.36 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.62 Total: -14.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.53 -6.33 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.708 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds