Wall clock time and date at job start Tue Mar 31 2020 13:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48495 * 109.47500 * 240.00141 * 3 2 1 5 5 H 1.48500 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47169 * 120.00378 * 3 2 1 7 7 C 1.38816 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99787 * 163.06905 * 7 2 1 9 9 N 1.36936 * 120.00176 * 343.07055 * 7 2 1 10 10 C 1.46925 * 120.62825 * 331.83544 * 9 7 2 11 11 C 1.53197 * 108.77737 * 233.63157 * 10 9 7 12 12 C 1.53037 * 109.31212 * 305.36698 * 11 10 9 13 13 C 1.52993 * 109.46297 * 181.38410 * 12 11 10 14 14 N 1.46501 * 109.47328 * 174.97092 * 13 12 11 15 15 C 1.34780 * 119.99591 * 180.02562 * 14 13 12 16 16 O 1.21578 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.47504 * 119.99377 * 180.02562 * 15 14 13 18 18 C 1.36693 * 126.82405 * 179.97438 * 17 15 14 19 19 C 1.42175 * 103.78640 * 180.02562 * 18 17 15 20 20 C 1.48235 * 126.84500 * 180.02562 * 19 18 17 21 21 O 1.21404 * 119.99769 * 359.97438 * 20 19 18 22 22 O 1.34649 * 119.99764 * 179.97438 * 20 19 18 23 23 N 1.30996 * 106.30602 * 359.97438 * 19 18 17 24 24 O 1.20869 * 111.80792 * 359.69961 * 23 19 18 25 25 C 1.53043 * 109.52646 * 61.36736 * 12 11 10 26 26 C 1.46925 * 120.63264 * 151.86037 * 9 7 2 27 27 H 0.97003 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58616 * 113.84615 * 10 9 7 29 29 H 1.09005 * 109.70891 * 353.48792 * 10 9 7 30 30 H 1.08999 * 109.49652 * 185.41708 * 11 10 9 31 31 H 1.08994 * 109.52177 * 65.33330 * 11 10 9 32 32 H 1.09003 * 109.45797 * 301.35609 * 12 11 10 33 33 H 1.09009 * 109.47097 * 54.97382 * 13 12 11 34 34 H 1.09003 * 109.47315 * 294.97418 * 13 12 11 35 35 H 0.96990 * 120.00000 * 359.97438 * 14 13 12 36 36 H 1.07995 * 128.11071 * 0.03723 * 18 17 15 37 37 H 0.96695 * 116.99782 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.49486 * 58.58577 * 25 12 11 39 39 H 1.09000 * 109.49712 * 178.67314 * 25 12 11 40 40 H 1.08995 * 109.58376 * 246.15544 * 26 9 7 41 41 H 1.09003 * 109.58150 * 6.43957 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3701 -2.3626 0.3443 10 6 0.2263 -2.3409 1.2662 11 6 0.4982 -3.3202 2.4125 12 6 0.8132 -4.7016 1.8340 13 6 1.0515 -5.6906 2.9767 14 7 1.2343 -7.0365 2.4277 15 6 1.4592 -8.0767 3.2547 16 8 1.5100 -7.8982 4.4562 17 6 1.6437 -9.4317 2.7018 18 6 1.8785 -10.5792 3.4066 19 6 1.9756 -11.5802 2.4016 20 6 2.2256 -13.0265 2.6089 21 8 2.3718 -13.4623 3.7325 22 8 2.2907 -13.8568 1.5509 23 7 1.7988 -10.9697 1.2562 24 8 1.6083 -9.7852 1.4033 25 6 2.0685 -4.6172 0.9626 26 6 1.8142 -3.6529 -0.2002 27 1 -0.4850 0.8401 0.0004 28 1 -0.6768 -2.6417 0.7352 29 1 0.0965 -1.3357 1.6675 30 1 -0.3822 -3.3856 3.0517 31 1 1.3477 -2.9687 2.9980 32 1 -0.0269 -5.0419 1.2285 33 1 0.1919 -5.6853 3.6471 34 1 1.9449 -5.3991 3.5291 35 1 1.1927 -7.1790 1.4692 36 1 1.9690 -10.6977 4.4762 37 1 2.4561 -14.7914 1.7358 38 1 2.9033 -4.2531 1.5615 39 1 2.3059 -5.6058 0.5699 40 1 1.0406 -4.0606 -0.8508 41 1 2.7334 -3.5124 -0.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:39 Heat of formation + Delta-G solvation = -65.921139 kcal Electronic energy + Delta-G solvation = -26384.996887 eV Core-core repulsion = 22268.077643 eV Total energy + Delta-G solvation = -4116.919243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.51969 -41.31218 -40.95974 -39.32779 -37.41670 -36.55751 -35.47521 -34.58241 -33.50299 -32.41243 -31.34749 -28.63410 -27.11240 -26.23461 -24.79524 -23.89753 -23.60287 -22.55391 -21.71256 -20.77121 -19.94929 -19.31036 -19.21527 -18.61774 -17.86516 -17.21692 -17.05270 -16.86060 -16.73892 -16.39785 -15.69370 -15.33600 -15.25479 -15.01107 -14.90615 -14.70199 -14.64898 -14.00536 -13.81727 -13.41995 -13.25189 -12.96176 -12.90002 -12.79205 -12.52188 -12.31398 -12.25023 -12.01291 -11.99542 -11.79054 -11.69980 -11.53778 -11.17283 -11.11593 -11.05741 -10.49560 -10.21857 -8.62489 -7.84279 -5.28666 -0.62136 -0.16517 1.18657 1.37028 1.48324 1.49370 1.50560 1.56947 1.77715 2.06130 2.53853 2.65637 3.30055 3.37891 3.59991 3.70567 3.76151 3.88053 3.99094 4.13029 4.16871 4.51156 4.56788 4.60548 4.74408 4.78696 4.84113 4.99496 5.06005 5.15560 5.21217 5.24645 5.34820 5.37836 5.48845 5.60177 5.70410 5.85066 6.15579 6.43507 6.48958 6.71629 6.85248 7.19705 7.92843 8.42469 9.21419 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.035285 B = 0.002059 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.349993 B =13595.750767 C =13988.557198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.175 3.825 11 C -0.122 4.122 12 C -0.080 4.080 13 C 0.133 3.867 14 N -0.694 5.694 15 C 0.610 3.390 16 O -0.539 6.539 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.033 4.033 20 C 0.582 3.418 21 O -0.512 6.512 22 O -0.493 6.493 23 N -0.294 5.294 24 O 0.167 5.833 25 C -0.117 4.117 26 C 0.138 3.862 27 H 0.249 0.751 28 H -0.002 1.002 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.420 0.580 36 H 0.208 0.792 37 H 0.445 0.555 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.018 0.982 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -24.989 4.720 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.050 3.950 11 C -0.161 4.161 12 C -0.099 4.099 13 C 0.011 3.989 14 N -0.345 5.345 15 C 0.393 3.607 16 O -0.417 6.417 17 C -0.138 4.138 18 C -0.117 4.117 19 C -0.188 4.188 20 C 0.423 3.577 21 O -0.399 6.399 22 O -0.307 6.307 23 N 0.015 4.985 24 O 0.076 5.924 25 C -0.156 4.156 26 C 0.013 3.987 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.258 0.742 36 H 0.225 0.775 37 H 0.309 0.691 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.732 -24.996 4.527 25.549 hybrid contribution 0.309 0.638 0.232 0.746 sum 3.042 -24.358 4.759 25.004 Atomic orbital electron populations 1.70167 1.06535 1.25779 1.55567 1.25759 0.96038 1.01375 1.01566 0.85403 0.77606 0.79553 0.78264 1.20226 1.22169 1.20555 1.19457 0.92743 0.86226 1.40655 0.91846 1.44338 1.36001 1.02411 1.50887 1.20587 0.87763 0.97608 0.89084 1.21968 1.01137 0.94875 0.98149 1.21175 0.98878 0.94058 0.95821 1.21506 1.02427 0.79038 0.95978 1.45870 1.70009 1.07277 1.11344 1.16378 0.77533 0.81183 0.85604 1.90909 1.52490 1.83474 1.14829 1.24077 1.09134 0.97193 0.83390 1.22984 0.98197 0.87609 1.02949 1.22377 1.11339 0.94942 0.90168 1.18874 0.72344 0.84270 0.82219 1.90961 1.46573 1.76861 1.25523 1.84548 1.82857 1.26446 1.36878 1.74258 1.10756 0.90662 1.22847 1.85014 1.62875 1.18301 1.26173 1.21961 0.97032 0.99419 0.97175 1.21087 0.97206 0.86014 0.94417 0.94203 0.98381 0.93212 0.90932 0.92921 0.90131 0.90368 0.91092 0.74185 0.77537 0.69068 0.92802 0.89517 0.96421 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 11.19 21.65 0.24 -54.29 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 3 Si 0.96 44.43 29.59 68.60 2.03 46.46 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.26 -14.03 9.58 84.03 0.81 -13.22 16 8 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 9 N -0.61 -29.36 2.99 -699.10 -2.09 -31.45 16 10 C 0.18 7.97 5.30 86.36 0.46 8.43 16 11 C -0.12 -4.01 5.36 30.67 0.16 -3.84 16 12 C -0.08 -2.04 2.19 -10.77 -0.02 -2.06 16 13 C 0.13 2.76 5.06 86.38 0.44 3.20 16 14 N -0.69 -11.76 5.27 -466.30 -2.46 -14.22 16 15 C 0.61 11.80 7.82 86.69 0.68 12.48 16 16 O -0.54 -14.01 16.91 -3.96 -0.07 -14.07 16 17 C -0.07 -1.19 7.28 24.35 0.18 -1.01 16 18 C -0.09 -1.53 10.77 22.89 0.25 -1.28 16 19 C -0.03 -0.57 7.22 42.91 0.31 -0.26 16 20 C 0.58 9.22 8.36 70.48 0.59 9.81 16 21 O -0.51 -10.24 17.73 20.15 0.36 -9.88 16 22 O -0.49 -5.09 13.44 -55.58 -0.75 -5.83 16 23 N -0.29 -5.24 12.09 -48.99 -0.59 -5.83 16 24 O 0.17 2.61 11.01 66.04 0.73 3.34 16 25 C -0.12 -3.19 5.25 30.67 0.16 -3.03 16 26 C 0.14 5.18 6.52 86.36 0.56 5.74 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.05 2.63 6.06 -2.38 -0.01 2.62 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.42 5.36 7.47 -92.72 -0.69 4.66 16 36 H 0.21 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.45 -0.18 9.11 -74.06 -0.67 -0.85 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.73 7.15 -2.39 -0.02 1.71 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 Total: -1.00 -71.30 354.30 2.12 -69.18 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -0.27 Total: 4.11 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.98 Total: 12.49 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.90 Total: -105.80 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.27 Total: -26.45 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.30 2.12 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds