Wall clock time and date at job start Tue Mar 31 2020 13:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.08999 * 109.49801 * 58.58643 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21583 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.47513 * 120.00047 * 180.02562 * 17 16 15 20 20 C 1.36683 * 126.82625 * 179.71518 * 19 17 16 21 21 C 1.42170 * 103.78975 * 179.87603 * 20 19 17 22 22 C 1.48225 * 126.84952 * 180.11784 * 21 20 19 23 23 O 1.21410 * 120.00122 * 0.29125 * 22 21 20 24 24 O 1.34644 * 120.00216 * 180.29994 * 22 21 20 25 25 N 1.30991 * 106.30268 * 0.38235 * 21 20 19 26 26 O 1.20867 * 111.80674 * 359.75476 * 25 21 20 27 27 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 28 28 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 30 30 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 31 31 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 32 32 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 33 33 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 34 34 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 35 35 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 36 36 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 37 37 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 38 38 H 1.08004 * 128.10779 * 359.95663 * 20 19 17 39 39 H 0.96706 * 117.00523 * 179.97438 * 24 22 21 40 40 H 1.09004 * 109.58771 * 246.19814 * 27 9 7 41 41 H 1.08998 * 109.58854 * 6.63257 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9090 -4.2408 1.5837 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5697 -8.1152 -0.7621 19 6 5.4467 -7.0091 -1.5995 20 6 6.0770 -8.0494 -2.2230 21 6 7.2456 -7.4562 -2.7741 22 6 8.2989 -8.1358 -3.5651 23 8 8.2076 -9.3225 -3.8048 24 8 9.3572 -7.4372 -4.0178 25 7 7.2087 -6.1905 -2.4386 26 8 6.2234 -5.9264 -1.7904 27 6 1.8152 -3.6539 -0.1863 28 1 -0.4850 0.8399 -0.0004 29 1 0.1001 -1.3265 1.6691 30 1 -0.6743 -2.6384 0.7459 31 1 1.3517 -2.9480 3.0109 32 1 -0.3776 -3.3672 3.0687 33 1 0.9907 -5.3887 2.6790 34 1 -0.0199 -5.0363 1.2570 35 1 2.5016 -6.7021 1.2763 36 1 1.6148 -6.3325 -0.2222 37 1 4.1561 -5.1085 -0.3666 38 1 5.7606 -9.0802 -2.2841 39 1 10.0185 -7.9237 -4.5288 40 1 1.0392 -4.0654 -0.8318 41 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:45 Heat of formation + Delta-G solvation = -42.938996 kcal Electronic energy + Delta-G solvation = -26666.498540 eV Core-core repulsion = 22550.575877 eV Total energy + Delta-G solvation = -4115.922663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.69483 -40.60406 -39.94007 -37.89392 -36.75043 -35.22754 -34.56734 -33.21917 -32.56057 -30.51262 -30.39541 -26.35144 -26.19662 -25.32728 -23.90335 -22.93387 -22.12406 -21.12685 -20.83463 -19.49882 -18.77581 -18.51488 -18.47330 -17.10030 -16.77737 -16.22817 -16.13732 -16.03729 -15.49001 -14.87188 -14.45890 -14.31045 -14.06200 -13.96552 -13.72191 -13.49555 -12.86658 -12.50157 -12.42106 -12.32930 -12.24831 -12.24211 -11.54958 -11.37077 -11.19854 -11.06475 -10.77273 -10.63521 -10.56541 -10.32484 -10.28814 -10.22602 -9.96727 -9.66229 -9.48743 -9.23588 -8.50070 -6.72169 -5.83092 -3.25888 0.20111 0.62148 1.97101 2.12863 2.25610 2.67843 2.94697 3.34758 3.42201 3.42616 3.44371 4.16260 4.40258 4.45276 4.52170 4.83684 4.97900 5.19966 5.24348 5.34857 5.38845 5.54932 5.73226 5.75862 5.78665 5.89687 6.10390 6.14915 6.27339 6.31390 6.53005 6.63360 6.69926 6.79378 6.88508 7.01313 7.19010 7.35517 7.40306 7.63603 7.74788 7.75464 8.40270 9.16617 9.80080 10.36261 11.25176 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.002764 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.489151 B =10128.570311 C =11796.321255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.120 4.120 14 H 0.076 0.924 15 C 0.125 3.875 16 N -0.702 5.702 17 C 0.603 3.397 18 O -0.511 6.511 19 C -0.073 4.073 20 C -0.101 4.101 21 C -0.027 4.027 22 C 0.576 3.424 23 O -0.490 6.490 24 O -0.496 6.496 25 N -0.283 5.283 26 O 0.159 5.841 27 C 0.152 3.848 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.412 0.588 38 H 0.198 0.802 39 H 0.423 0.577 40 H 0.020 0.980 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 -14.865 -1.853 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.042 3.958 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.140 4.140 14 H 0.095 0.905 15 C 0.002 3.998 16 N -0.352 5.352 17 C 0.385 3.615 18 O -0.387 6.387 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.182 4.182 22 C 0.416 3.584 23 O -0.375 6.375 24 O -0.308 6.308 25 N 0.024 4.976 26 O 0.069 5.931 27 C 0.025 3.975 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.215 0.785 39 H 0.283 0.717 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.028 -14.602 -1.922 19.015 hybrid contribution 0.772 0.295 -0.443 0.937 sum 12.799 -14.307 -2.366 19.342 Atomic orbital electron populations 1.70034 1.05308 1.25554 1.53655 1.25038 0.95254 0.98455 1.00801 0.86310 0.79256 0.83741 0.77645 1.21450 1.21575 1.20366 1.19163 0.92698 0.84825 1.41783 0.91635 1.44049 1.36026 1.01221 1.50021 1.20807 0.88516 0.98475 0.87972 1.22167 1.00175 0.95857 0.99874 1.21338 0.96590 0.97873 0.97939 1.22077 0.99134 0.93175 0.99650 0.90513 1.21669 0.83722 0.98817 0.95623 1.46017 1.25063 1.11046 1.53118 1.16388 0.81267 0.84940 0.78928 1.90901 1.58022 1.29660 1.60096 1.24409 0.97217 0.86644 1.05564 1.22790 0.91336 1.02167 0.96055 1.22191 0.98327 0.91030 1.06667 1.18989 0.79723 0.83676 0.76007 1.90961 1.76728 1.15281 1.54526 1.84593 1.33073 1.46046 1.67061 1.74290 1.02503 1.16026 1.04745 1.85040 1.23528 1.33872 1.50631 1.21012 0.97601 0.86958 0.91950 0.93607 0.89532 0.96410 0.92690 0.93126 0.93330 0.92373 0.91122 0.90727 0.75189 0.78490 0.71703 0.96199 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.19 55.49 0.62 -24.84 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.03 29.59 -169.99 -5.03 16.01 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.65 9.58 -15.06 -0.14 -6.80 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.83 2.99 -172.06 -0.51 -14.35 16 10 C 0.17 3.80 5.31 -3.71 -0.02 3.78 16 11 C -0.14 -2.49 6.08 -26.61 -0.16 -2.65 16 12 C -0.10 -1.48 5.16 -26.69 -0.14 -1.61 16 13 C -0.12 -1.74 2.39 -90.27 -0.22 -1.96 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 15 C 0.12 1.52 5.06 -4.05 -0.02 1.50 16 16 N -0.70 -7.90 5.33 -61.36 -0.33 -8.23 16 17 C 0.60 7.12 7.82 -12.48 -0.10 7.02 16 18 O -0.51 -7.38 16.91 5.29 0.09 -7.29 16 19 C -0.07 -0.76 7.28 -36.36 -0.26 -1.03 16 20 C -0.10 -1.00 10.77 -38.64 -0.42 -1.41 16 21 C -0.03 -0.28 7.22 -82.61 -0.60 -0.88 16 22 C 0.58 5.55 8.36 34.84 0.29 5.84 16 23 O -0.49 -5.57 17.73 -19.20 -0.34 -5.91 16 24 O -0.50 -3.54 13.44 -40.34 -0.54 -4.09 16 25 N -0.28 -3.21 12.09 33.35 0.40 -2.81 16 26 O 0.16 1.68 11.01 15.64 0.17 1.85 16 27 C 0.15 2.82 5.63 -3.48 -0.02 2.80 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.41 4.22 7.54 -40.82 -0.31 3.91 16 38 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.42 0.74 9.11 45.56 0.42 1.15 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.91 7.16 -51.93 -0.37 0.54 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -32.25 354.56 -6.37 -38.62 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.35 Total: 1.09 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.89 Total: 4.59 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.18 Total: -50.22 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.62 Total: -15.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.25 -6.37 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.318 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds